Homology modeling of the cation binding sites of Na+K+-ATPase

Proceedings of the National Academy of Sciences of the United States of America

Volumn 99, Issue 25, 2002, Pages 15977-15982

  Ogawa, Haruo ^a,b   Toyoshima, Chikashi ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b LERNER RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATASE (CALCIUM); ADENOSINE TRIPHOSPHATASE (POTASSIUM SODIUM); CATION; OXYGEN; POTASSIUM ION; SODIUM ION;

ALPHA CHAIN; AMINO ACID SEQUENCE; ARTICLE; ATOM; BINDING AFFINITY; BINDING SITE; CALCULATION; MODEL; PRIORITY JOURNAL; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; ANIMALS; BINDING SITES; CALCIUM; CALCIUM-TRANSPORTING ATPASES; HUMANS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NA(+)-K(+)-EXCHANGING ATPASE; POTASSIUM; PROTEIN CONFORMATION; RABBITS; SARCOPLASMIC RETICULUM CALCIUM-TRANSPORTING ATPASES; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; SODIUM; SPECIES SPECIFICITY;

EID: 0037058922     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.202622299     Document Type: Article

References (41)

1. Glynn, I. M. (1993) J. Physiol. 462, 1-30.
2. Kaplan, J. H. (2002) Annu. Rev. Biochem. 71, 511-535.
3. Møller, J. V., Jüul, B. & le Maire, M. (1996) Biochim. Biophys. Acta 1286, 1-51.
4. Toyoshima, C., Nakasako, M., Nomura, H. & Ogawa, H. (2000) Nature 405, 647-655.
5. Toyoshima, C. & Nomura, H. (2002) Nature 418, 605-611.
6. Sali, A. & Blundell, T. L. (1993) J. Mol. Biol. 234, 779-815.
7. Baldwin, J. M. (1993) EMBO J. 12, 1693-1703.
8. Nayal, M. & Di Cera, E. (1994) Proc. Natl. Acad. Sci. USA 91, 817-821.
9. Brown, I. D. & Wu, K. K. (1976) Acta Crystallogr. B 32, 1957-1959.
10. Nayal, M. & Di Cera, E. (1996) J. Mol. Biol. 256, 228-234.
11. Matsui, H. & Homareda, H. (1982) J. Biochem. (Tokyo) 92, 193-217.
12. Morgenstern, B., Frech, K., Dress, A. & Werner, T. (1998) Bioinformatics 14, 290-294.
13. Cornell, W. D., Cieplak, P., Bayly, C. I., Gould, I. R., Merz, K. M., Ferguson, D. M., Spellmeyer, D. C., Fox, T., Caldwell, J. W. & Kollman, P. A. (1995) J. Am. Chem. Soc. 117, 5179-5197.
14. Laskowski, R. A., MacArthur, M. A., Moss, D. S. & Thornton, J. M. (1993) Appl. Crystallogr. 26, 283-291.
15. Vriend, G. (1990) J. Mol. Graphics 8, 52-56.
16. Zhang, P., Toyoshima, C., Yonekura, K., Green, N. M. & Stokes, D. L. (1998) Nature 392, 835-839.
17. Argüello, J. M. & Kaplan, J. H. (1994) J. Biol. Chem. 269, 6892-6899.
18. Sweadner, K. J. & Donnet, C. (2001) Biochem. J. 356, 685-704.
19. Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997) Nucleic Acids Res. 25, 3389-3402.
20. Goldshleger, R., Tal, D. M., Moorman, J., Stein, W. D. & Karlish, S. J. (1992) Proc. Natl. Acad, Sci. USA 89, 6911 6915.
21. Van Huysse, J. W. & Lingrel, J. B. (1993) Cell. Mol. Biol. Res. 39, 497-507.
22. Senes, A., Ubarretxena-Belandia, I. & Engelman, D. M. (2001) Proc. Natl. Acad. Sci. USA 98, 9056 9061.
23. Glusker, J. P. (1991) Adv. Protein Chem. 42, 1-76.
24. Zhang, E. & Tulinsky, A. (1997) Biophys. Chem. 63, 185-200.
25. DeLaBarre, B., Thompson, P. R., Wright, G. D. & Berghuis, A. M. (2000) Nat. Struct. Biol. 7, 238-244.
26. Feng, J. & Lingrel, J. B. (1994) Biochemistry 33, 4218 4224.
27. Pedersen, P. A., Nielsen, J. M., Rasmussen, J. H. & Jorgensen, P. L. (1998) Biochemistry 37, 17818-17827.
28. Feng, J. & Lingrel, J. B. (1995) Cell. Mol. Biol. Res. 41, 29-37.
29. Vilsen, B. (1995) Biochemistry 34, 1455-1463.
30. Nielsen, J. M., Pedersen, P. A., Karlish, S. J. & Jorgensen, P. L. (1998) Biochemistry 37, 1961-1968.
31. Argüello, J. M. & Lingrel, J. B. (1995) J. Biol. Chem. 270, 22764-22771.
32. Jewell-Motz, E. A. & Lingrel, J. B. (1993) Biochemistry 32, 13523-13530.
33. Vilsen, B. (1993) Biochemistry 32, 13340-13349.
34. Vilsen, B., Ramlov, D. & Andersen, J. P. (1997) Ann. N.Y. Acad. Sci. 834, 297-309.
35. Skerjanc, I. S., Toyofuku, T., Richardson, C. & MacLennan, D. H. (1993) J. Biol. Chem. 268, 15944-15950.
36. Zhang, Z., Lewis, D., Strock, C., Inesi, G., Nakasako, M., Nomura. H. & Toyoshima, C. (2000) Biochemistry 39, 8758-8767.
37. Van Huysse, J. W., Jewell, E. A. & Lingrel, J. B. (1993) Biochemistry 32, 819-826.
38. Guennoun, S. & Horisberger, J.-D. (2000) FEBS Lett. 482, 144 148.
39. Clarke, D. M., Loo, T. W. & MacLennan, D. H. (1990) J. Biol. Chem. 265, 6262-6267.
40. Vilsen, B. (1997) Biochemistry 36, 13312-13324.
41. Kraulls, P. J. (1991) J. Appl. Crystallogr. 24, 246-950.