Crystal structure of the calcium pump of sarcoplasmic reticulum at 2.6 Å resolution

Nature

Volumn 405, Issue 6787, 2000, Pages 647-655

  Toyoshima, Chikashi ^a,b   Nakasako, Masayoshi ^a,b,c   Nomura, Hiromi ^a   Ogawa, Haruo ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b INST OF PHYS AND CHEMICAL RESEARCH   (Japan)

^c JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE; ADENOSINE TRIPHOSPHATASE (CALCIUM); ADENOSINE TRIPHOSPHATE; AMINO ACID; CALCIUM ION; GUANOSINE TRIPHOSPHATASE; VANADIC ACID;

AMINO ACID SEQUENCE; ARTICLE; BINDING SITE; CRYSTAL STRUCTURE; ELECTRON; ION TRANSPORT; NONHUMAN; PHOSPHORYLATION; PRIORITY JOURNAL; PROTEIN FOLDING; SARCOPLASMIC RETICULUM; X RAY CRYSTALLOGRAPHY;

ADENOSINE TRIPHOSPHATE; ANIMALS; BINDING SITES; CALCIUM; CALCIUM-TRANSPORTING ATPASES; CRYSTALLOGRAPHY, X-RAY; CYTOPLASM; HYDROLYSIS; MODELS, MOLECULAR; PROTEIN CONFORMATION; PROTEIN STRUCTURE, TERTIARY; RABBITS; SARCOPLASMIC RETICULUM;

EID: 0034621834     PISSN: 00280836     EISSN: None     Source Type: Journal    
DOI: 10.1038/35015017     Document Type: Article

References (50)

1. Ebashi, S. & Lipman, F. Adenosine triphosphate-linked concentration of calcium ions in a particulate fraction of rabbit muscle. J. Cell. Biol. 14, 389-400 (1962).
2. Møller, J. V., Juul, B. & le Maire, M. Structural organization, ion transport, and energy transduction of P-type ATPases. Biochim. Biophys. Acta 1286, 1-51 (1996).
3. 2+-ATPases. J. Biol. Chem. 272, 28815-28818 (1997).
4. McIntosh, D. B. The ATP binding sites of P-type ion transport ATPases. Adv. Mol. Cell. Biol. 23A, 33-99 (1998).
5. 2+-dependent ATPase from rabbit muscle sarcoplasmic reticulum, deduced from its complementary DNA sequence. Nature 316, 696-700 (1985).
6. 2+-ATPase. Nature 339, 476-478 (1989).
7. Saraste, M., Sibbald, P. R. & Wittinghofer, A. The P-loop - a common motif in ATP-and GTP-binding proteins. Trends Biochem. Sci. 15, 430-434 (1990).
8. Aravind, L., Galperin, M. Y. & Koonin, E. V. The catalytic domain of the P-type ATPase has the haloacid dehalogenase fold. Trends Biochem. Sci. 23, 127-129 (1998).
9. 2+-ATPase vesicles treated with vanadate. J. Biol. Chem. 258, 2599-2603 (1983).
10. 2--ATPase in detergent-solubilized sarcoplasmic reticulum. J. Biol. Chem. 262, 6439-6442 (1987).
11. Stokes, D. L. & Green, N. M. Three-dimensional crystals of CaATPase from sarcoplasmic reticulum. Symmetry and molecular packing. Biophys. J. 57, 1-14 (1990).
12. Toyoshima, C., Sasabe, H. & Stokes, D. L. Three-dimensional cryo-electron microscopy of the calcium ion pump in the sarcoplasmic reticulum membrane. Nature 362, 467-471 (1993).
13. Zhang, P., Toyoshima, C., Yonekura, K., Green, N. M. & Stokes, D. L. Structure of the calcium pump from sarcoplasmic reticulum at 8-Å resolution. Nature 392, 835-839 (1998).
14. 2+ pump of sarcoplasmic reticulum: a view along the lipid bilayer at 9-Å resolution. Biophys. J. 75, 41-52 (1998).
15. 2+ATPase of sarcoplasmic reticulum. Expression in developing skeletal muscle. J. Biol. Chem. 262, 3768-3774 (1987).
16. 2+-ATPase of cardiac sarcoplasmic reticulum are critical for functional association with phospholamban. J. Biol. Chem. 269, 22929-22932 (1994).
17. 2+ transport ATPase mediate resistance to thapsigargin in thapsigargin-resistant hamster cells. J. Biol. Chem. 273, 3542-3546 (1998).
18. 2+-binding sites in proteins. Proc. Natl Acad. Sci. USA 91, 817-821 (1994)
19. Inesi, G., Kurzmack, M., Coan, C. & Lewis, D. E. Cooperative calcium binding and ATPase activation in sarcoplasmic reticulum vesicles. J. Biol. Chem. 255, 3025-3031 (1980).
20. 2+-ATPase. Biochemistry 38, 5813-5821 (1999).
21. + conduction and selectivity. Science 280, 69-77 (1998).
22. 2+-ATPase of sarcoplasmic reticulum. J. Biol. Chem. 264, 11246-11251 (1989).
23. Hisano, T. et al. Crystal structure of L-2-haloacid dehalogenase from Pseudomonas sp. YL. An α/β hydrolase structure that is different from the α/β hydrolase fold. J. Biol. Chem. 271, 20322-20330 (1996).
24. 2+-ATPase produces pumps defective in ATP binding. J. Biol. Chem. 271, 25778-25789 (1996).
25. Pick, U. Interaction of fluorescein isothiocyanate with nucleotide-binding sites of the Ca-ATPase from sarcoplasmic reticulum. Eur. J. Biochem. 121, 187-195 (1981).
26. 2+-ATPase. J. Biol. Chem. 267, 5301-5309 (1992).
27. 2+-transporting ATPase of sarcoplasmic reticulum as revealed by an alteration of the target-site specificity of adenosine triphosphopyridoxal. J. Biochem. (Tokyo) 106, 1121-1125 (1989).
28. 2+ binding properties after removal of cytoplasmic fragments by proteinase K? J. Biol. Chem. 270, 20123-20134 (1995).
29. Andersen, J. P., Vilsen, B., Collins, J. H. & Jørgensen, P. L. Localization of E1-E2 conformational transitions of sarcoplasmic reticulum Ca-ATPase by tryptic cleavage and hydrophobic labeling. J. Membr. Biol. 93, 85-92 (1986).
30. Li, Y. F. et al. Crystal structures of reaction intermediates of L-2-haloacid dehalogenase and implications for the reaction mechanism. J. Biol. Chem. 273, 15035-15044 (1998).
31. Goldshleger, R. & Karlish, S. J. D. Fe-catalyzed cleavage of the alpha subunit of Na/K-ATPase: evidence for conformation-sensitive interactions between cytoplasmic domains. Proc. Natl Acad. Sci. USA 94, 9596-9601 (1997).
32. 2+ ATPase of fast twitch skeletal muscle sarcoplasmic reticulum. J. Biol. Chem. 272, 31412-31419 (1997).
33. 2+ and is functionally important. J. Biol. Chem. 272, 17258-17262 (1997).
34. 2+-ATPase. J. Biol. Chem. 267, 22328-22335 (1992).
35. 2+)-ATPase active site. J. Biol. Chem. 259, 2961-2970 (1984).
36. Huang, S. & Squier, T. C. Enhanced rotational dynamics of the phosphorylation domain of the Ca-ATPase upon calcium activation. Biochemistry 37, 18064-18073 (1998).
37. 2+-ATPase. J. Biol. Chem. 273, 6619-6631 (1998).
38. 2+ transport ATPase by thapsigargin at subnanomolar concentrations. J. Biol. Chem. 266, 13503-13506 (1991).
39. 2+-ATPase of muscle sarcoplasmic reticulum. Biochim. Biophys. Acta 1077, 107-118 (1991).
40. Kamiya, N. et al. Design of the high energy undulator pilot beamline for macromolecular crystallography at the SPring-8. Rev. Sci. Instrum. 66, 1703-1705 (1995).
41. Adachi, S., Oguchi, T. & Ueki, T. Present status of RIKEN beamline II (BL44B2) for structural biology. SPring-8 Annual Report 1, 239-240 (1996).
42. Otwinowski, Z. & Minor, W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-325 (1997).
43. Leslie, A. G. W. MOSFLM-recent changes and future developments. CCP4 Newsletter on Protein Crystallography 35, 18-19 (1998).
44. Collaborative Computational project, No. 4. The CCP4 suite: programs for protein crystallography. Acta Crystallogr. D 50, 760-763 (1994).
45. Brünger, A. T. et al. Crystallography & NMR system: A new software suite for macromolecular structure determination. Acta Crystallogr. D 54, 905-921 (1998).
46. Kabsch, W. & Sander, C. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22, 2577-2637 (1983).
47. Kraulis, P. J. MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallogr. 24, 946-950 (1991).
48. 2+-ATPase of sarcoplasmic reticulum. J. Biol. Chem. 265, 22223-22227 (1990).
49. +-ATPase revealed Asp-710 in the catalytic site. FEBS Lett. 217, 111-116 (1987).
50. Nicholls, A., Sharp, K. A. & Honig, B. Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons. Proteins Struct. Funct. Genet. 11, 281-296 (1991).