Structurally distinct active sites in the copper(II)-substituted aminopeptidases from Aeromonas proteolytica and Escherichia coli

Journal of the American Chemical Society

Volumn 124, Issue 44, 2002, Pages 13025-13034

  Bennett, Brian ^a   Antholine, William E ^a   D'Souza, Ventris M ^b   Chen, Guanjing ^b   Ustinyuk, Leila ^b   Holz, Richard C ^b  

^a MEDICAL COLLEGE OF WISCONSIN   (United States)

^b UTAH STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVE SITES;

CATALYSIS; ELECTRON SPIN RESONANCE SPECTROSCOPY; ENZYMES; ESCHERICHIA COLI; HYDROLYSIS; PH EFFECTS;

COPPER;

AMINOPEPTIDASE; COPPER;

AEROMONAS; ARTICLE; CATALYSIS; COMPLEX FORMATION; ELECTRON SPIN RESONANCE; ENZYME ACTIVE SITE; ENZYME ACTIVITY; ESCHERICHIA COLI; PEPTIDE SYNTHESIS; PROTEIN FAMILY; STRUCTURE ANALYSIS;

AEROMONAS; AMINOPEPTIDASES; BACTERIAL PROTEINS; BINDING SITES; COPPER; ELECTRON SPIN RESONANCE SPECTROSCOPY; ESCHERICHIA COLI; SPECTRUM ANALYSIS;

EID: 0037032238     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja026341p     Document Type: Article

References (63)

1. Sträter, N.; Lipscomb, W. N.; Klabunde, T.; Krebs, B. Angew. Chem., Int. Ed. Engl. 1996, 35, 2024-2055.
2. Lipscomb, W. N.; Sträter, N. Chem. Rev. 1996, 96, 2375-2433.
3. Wilcox, D. E. Chem. Rev. 1996, 96, 2435-2458.
4. Dismukes, G. C. Chem. Rev. 1996, 96, 2909-2926.
5. Pelido-Cejudo, G.; Conway, B.; Proulx, P.; Brown, R.; Izaguirre, C. A. Antiviral Res. 1997, 36, 167-177.
6. Taunton, J. Chem. Biol. 1997, 4, 493-496.
7. Sin, N.; Meng, L.; Wang, M. Q.; Wen, J. J.; Bormann, W. G.; Crews, C. M. Proc. Natl. Acad. Sci. U.S.A. 1997, 94, 6099-6103.
8. Griffith, E. C.; Su, Z.; Turk, B. E.; Chen, S.; Chang, Y.-H.; Wu, Z.; Biemann, K.; Liu, J. O. Chem. Biol. 1997, 4, 461-471.
9. Lowther, W. T.; McMillen, D. A.; Orville, A. M.; Matthews, B. M. Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 12153-12157.
10. Liu, S.; Widom, J.; Kemp, C. W.; Crews, C. M.; Clardy, J. Science 1998, 282, 1324-1327.
11. Prescott, J. M.; Wagner, F. W.; Holmquist, B.; Vallee, B. L. Biochemistry 1985, 24, 5350-5356.
12. Bayliss, M. E.; Prescott, J. M. Biochemistry 1986, 25, 8113-8117.
13. Bennett, B.; Holz, R. C. Biochemistry 1997, 36, 9837-9846.
14. Bennett, B.; Holz, R. C. J. Am. Chem. Soc. 1998, 120, 12139-12140.
15. DePaola, C. C.; Bennett, B.; Holz, R. C.; Ringe, D.; Petsko, G. A. Biochemistry 1999, 38, 9048-9053.
16. Stamper, C.; Bennett, B.; Edwards, T.; Holz, R. C.; Ringe, D.; Petsko, G. Biochemistry 2001, 40, 7035-7046.
17. D'souza, V. M.; Bennett, B.; Copik, A. J.; Holz, R. C. Biochemistry 2000, 39, 3817-3826.
18. Lowther, W. T.; Orville, A. M.; Madden, D. T.; Lim, S.; Rich, D. H.; Matthews, B. W. Biochemistry 1999, 38, 7678-7688.
19. Tahirov, T. H.; Oki, H.; Tsukihara, T.; Ogasahara, K.; Yutani, K.; Ogata, K.; Izu, Y.; Tsunasawa, S.; Kato, I. J. Mol. Biol. 1998, 284, 101-124.
20. Wilce, M. C.; Bond, C. S.; Dixon, N. E.; Freeman, H. C.; Guss, J. M.; Lilley, P. E.; Wilce, J. A. Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 3472-3477.
21. Lowther, W. T.; Zhang, Y.; Sampson, P. B.; Honek, J. F.; Matthews, B. W. Biochemistry, 1999, 38, 14810.
22. Gilboa, R.; Greenblatt, H. M.; Perach, M.; Spungin-Bialik, A.; Lessel, U.; Wohlfahrt, G.; Schomburg, D.; Blumberg, S.; Shoham, G. Acta Crystallogr., Sect. D 2000. 56, 551.
23. Strater, N.; Lipscomb, W. N. Biochemistry, 1995, 34, 14792-14800.
24. Strater, N.; Lipscomb, W. N. Biochemistry, 1995, 34, 9200-9210.
25. Kim, H.; Lipscomb, W. N. Biochemistry 1993, 32, 8465-8478.
26. Bennett, B.; Holz, R. C. J. Am. Chem. Soc. 1997, 119, 1923-1933.
27. Holz, R. C.; Bennett, B.; Chen, G.; Ming, L.-J. J. Am. Chem. Soc. 1998, 120, 6329-6335.
28. Ustynyuk, L.; Bennett, B.; Edwards, T.; Holz. R. C. Biochemistry 1999, 38, 11433-11439.
29. Huntington, K. M.; Bienvenue, D. L.; Wei, Y.; Bennett, B.; Holz, R. C.; Pei, D. Biochemistry 1999, 38, 15587-15596.
30. Bienvenue, D. L.; Bennett, B.; Holz, R. C. J. Inorg. Biochem. 2000, 78, 43-54.
31. Wilkes, S. H.; Prescott, J. M. J. Biol. Chem. 1987, 262, 8621-8625.
32. Bayliss, M. E.; Prescott, J. M. Biochemistry 1986, 25, 8113-8117.
33. Wilkes, S. H.; Prescott, J. M. J. Biol. Chem. 1985, 260, 13154-13162.
34. Baker, J. O.; Prescott, J. M. Biochem. Biophys. Res. Commun. 1985, 130, 1154-1160.
35. Roderick, S. L.; Matthews, B. W. Biochemistry 1993, 32, 3907-3912.
36. Prescott, J. M.; Wilkes, S. H. Methods Enzymol. 1976, 45B, 530-543.
37. Chen, G.; Edwards, T.; D'souza, V. M.; Holz, R. C. Biochemistry 1997, 36, 4278-4286.
38. D'souza, V. M.; Holz, R. C. Biochemistry 1999, 38, 11079-11085.
39. Wang, D. M.; Hanson, G. R. J. Magn. Reson. A 1995, 117, 1-8.
40. Vänngård, T. In Biological Applications of Electron Spin Resonance; Swartz, H. M., Bolton, J. R., Borg, D. C., Eds.; Wiley-Interscience: New York, 1972; p 411.
41. Eaton, S. S.; Kundalika, M. M.; Sawant, B. M.; Eaton, G. R. J. Am. Chem. Soc. 1993, 105, 6560-6567.
42. Boas, J. F.; Pilbrow, J. R.; Smith, T. D. In ESR of Copper in Biological Systems, in Biological Magnetic Resonance; Berliner, L. J., Reuben, J., Eds.; Plenum: New York, 1978; pp 277-342.
43. Hendrich, M. P.; Debrunner, P. G. Biophys. J. 1989, 56, 489-506.
44. Petasis, D. T.; Hendrich, M. P. J. Magn. Reson. 1999, 136, 200-206.
45. Moriya, T. Phys. Rev. 1960, 120, 91-98.
46. Calvo, R.; Passeggi, M. C. G.; Isaacson, R. A.; Okamura, M. Y.; Feher, G. Biophys. J. 1990, 58, 149-165.
47. Kahn, O.; Boillot, M.-L. In Biological and Inorganic Copper Chemistry; Karlin, K. D., Zubieta, J., Eds.; Adenine Press: Guilderland, NY, 1985; pp 187-208.
48. Solomon, E. I.; Baldwin, M. J.; Lowery, M. D. Chem. Rev. 1992, 92, 521-542.
49. Solomon, E. I.; Lowery, M. D.; Lacroix, L. B.; Root, D. E. Methods Enzymol. 1993, 266, 1-33.
50. Hathaway, B. J.; Billing, D. E. Coord. Chem. Rev. 1970, 5, 143-207.
51. Peisach, J.; Blumberg, W. E. Arch. Biochem. Biophys. 1974, 165, 691-708.
52. Malmström, B. G.; Reinhammar, B.; Vänngard, T. Biochim. Biophys. Acta 1968, 156, 67-76.
53. Nakamura, T.; Makino, N.; Ogura, Y. J. Biochem. (Tokyo) 1968, 64, 189-195.
54. Messerschmidt, A.; Ladenstein, R.; Huber, R.; Bolognesi, M.; Avigliano, L.; Petruzelli, R.; Rossi, A.; Finazzi-Agro, A. J. Mol. Biol. 1992, 224, 179-205.
55. Chevrier, B.; Schalk, C.; D'Orchymont, H.; Rondeau, J.-M.; Moras, D.; Tarnus, C. Structure 1994, 2, 283-291.
56. Chevrier, B.; D'Orchymont, H.; Schalk, C.; Tarnus, C.; Moras, D. Eur. J. Biochem. 1996, 237, 393-398.
57. Nishida, Y.; Shimo, H.; Maehara, H.; Kida, S. J. Chem. Soc., Dalton Trans. 1985, 1985, 1945-1951.
58. Berends, H. P.; Stephan, D. W. Inorg. Chim. Acta 1985, 99, L53-L56.
59. Oberhausen, K. J.; Richardson, J. F.; Buchanan, R. M.; McCusker, J. K.; Hendrickson, D. N.; Latour, J.-M. Inorg. Chem. 1991, 30, 1357-1365.
60. Holz, R. C.; Brink, J. M.; Gobena, F. T.; O'Connor, C. J. Inorg. Chem. 1994, 33, 6086-6092.
61. Holz, R. C.; Gobena, F. T. Polyhedron 1996, 15, 2179-2185.
62. Holz, R. C.; Bradshaw, J. M.; Bennett, B. Inorg. Chem. 1998, 37, 1219-1225.
63. Cosper, N. J.; D'souza, V. M.; Scott, R. A.; Holz, R. C. Biochemistry 2001, 40, 13302-13309.