Bispyrene-conjugated 2′-O-methyloligonucleotide as a highly specific RNA-recognition probe

Angewandte Chemie - International Edition

Volumn 41, Issue 19, 2002, Pages 3648-3650

  Mahara, Atsushi ^a   Iwase, Reiko ^a   Sakamoto, Takashi ^a   Yamana, Kazushige ^b   Yamaoka, Tetsuji ^a   Murakami, Akira ^a  

^a KYOTO INSTITUTE OF TECHNOLOGY   (Japan)

^b UNIVERSITY OF HYOGO   (Japan)

Author keywords

Antisense agents; Fluorescent probes; FRET; RNA recognition

Indexed keywords

CELLS; DNA; FLUORESCENCE; IRRADIATION; ORGANIC COMPOUNDS;

OLIGONUCLEOTIDES;

RNA;

2' O METHYLOLIGONUCLEOTIDE; OLIGONUCLEOTIDE; PYRENE DERIVATIVE; RNA; RNA 5S; UNCLASSIFIED DRUG;

ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; CONFORMATION; ENZYME ACTIVITY; ENZYME SPECIFICITY; FLUORESCENCE; GENETICS; HYBRIDIZATION; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PROTEIN FOLDING; RNA ANALYSIS; RNA PROBE; RNA STRUCTURE; SPECTROFLUOROMETRY;

BASE SEQUENCE; MOLECULAR SEQUENCE DATA; MOLECULAR STRUCTURE; NUCLEIC ACID CONFORMATION; OLIGONUCLEOTIDES; RNA; RNA PROBES; RNA, RIBOSOMAL, 5S; SPECTROMETRY, FLUORESCENCE; SUBSTRATE SPECIFICITY;

EID: 0037020361     PISSN: 14337851     EISSN: None     Source Type: Journal    
DOI: 10.1002/1521-3773(20021004)41:19<3648::AID-ANIE3648>3.0.CO;2-Y     Document Type: Article

References (28)

1. O. Matveeva, B. Felden, A. Tsodikov, J. Johnston, B. P. Monia, J. F. Atkins, R. F. Gesteland, S. M. Freier, Nat. Biotechnol. 1998, 16, 1374-1375.
2. a) S. M. Freier, R. Kierzek, J. A. Jaeger, N. Sugimoto, M. H. Caruthers, T. Neilson, D. H. Turner, Proc. Natl. Acad. Sci. USA 1986, 83, 9373-9377;
3. b) A. E. Walter, D. H. Turner, J. Kim, M. H. Lyttle, P. Müller, D. H. Mathews, M. Zuker, Proc. Natl. Acad. Sci. USA 1994, 91, 9218-9222;
4. c) J-H. Chen, S-Y. Le, J. V. Maizel, Nucleic Acids Res. 2000, 28, 991-999.
5. a) S. P. Ho, D. H. O. Brition, E. A. Stone, D. L. Behrens, L. M. Leffet, F. W. Hobbs, J. A. Miller, G. L. Trainor, Nucleic Acids Res. 1996, 24, 1901-1907;
6. b) W. F. Lima, V. Brown-Driver, M. Fox, R. Hanecak, T. W. Bruice, J. Biol. Chem. 1997, 272, 626-638;
7. c) S. P. Ho, Y. Bao, T. Lesher, R. Malhotra, L. Y. Ma, S. J. Jluharty, R. R. Sakai, Nat. Biotechnol. 1998, 16, 59-63;
8. d) Y. Matsuda, K. Kamiya, K. Uchida, Anal. Chim. Acta 1998, 365, 55-58.
9. a) N. Milner, K. U. Mir, E. M. Southern, Nat. Biotechnol. 1997, 15, 537-541;
10. b) M. Sohail, S. Akhtar, E. M. Southern, RNA 1999, 5, 646-655.
11. T. Tuschl, C. Gohlke, T. M. Jovin, E. Westhof, F. Eckstein, Science 1994, 266, 785-788.
12. D. L. Sokol, X. Zhang, P. Lu, A. M. Gewirtz, Proc. Natl. Acad. Sci. USA 1998, 95, 11538-11543.
13. a) K. Ebata, M. Masuko, H. Ohtani, M. Kashiwasake-Jibu, Photochem. Photobiol. 1995, 62, 836-839;
14. b) F. D. Lewis, Y. Zhang, R. L. Letsinger, J. Am. Chem. Soc. 1997, 119, 5451-5452;
15. c) K. Yamana, M. Takei, H. Nakano, Tetrahedron Lett. 1997, 38, 6051-6054;
16. d) P. L. Paris, J. M. Langenhan, E. T. Kool, Nucleic Acids Res. 1998, 26, 3789-3793;
17. e) M Masuko, H. Ohtani, K. Ebata, A. Shimadzu, Nucleic Acids Res. 1998, 26, 5409-5416;
18. f) E. Kostenko, M. Dobrikov, D. Pyshnyi, V. Petyuk, N. Komaruva, V. Vlassov, M. Zenkova, Nucleic Acids Res. 2001, 29, 3611-3620.
19. a) K. Yamana, Y. Ohashi, K. Nunota, M. Kitamura, H. Nakano, O Sangen, T. Shimidzu, Tetrahedron Lett. 1991, 32, 6347-6350;
20. b) K. Yamana, R. Iwase, S. Furutani, H. Tsuchida, H. Zako, T. Yamaoka, A. Murakami, Nucleic Acids Res. 1999, 27, 2387-2392;
21. c) K. Yamana, H. Zako, K. Asazuma, R. Iwase, H, Nakano, A. Murakami, Angew. Chem. 2001, 113, 1138-1140; Angew. Chem. Int. Ed. 2001, 40, 1104-1106.
22. c) K. Yamana, H. Zako, K. Asazuma, R. Iwase, H, Nakano, A. Murakami, Angew. Chem. 2001, 113, 1138-1140; Angew. Chem. Int. Ed. 2001, 40, 1104-1106.
23. a) H. F. Noller, Annu. Rev. Biochem. 1984, 53, 119-162;
24. b) K. H. Johnson, D. M. Gray, Biopolymers 1991, 31, 385-395;
25. c) M. Szymanski, M. Z. Barciszewska, V. A. Erdmann, J. Barciszewski, Nucleic Acids Res. 2002, 30, 176-178.
26. P. C. Bevilacqua, R. Kierzek, K. A. Johnson, D. H. Turner. Science 1992, 258, 1355-1358.
27. C. C. Correll, B. Freeborn, P. B. Moore, T. A. Steitz, Cell 1997, 91, 705-712.
28. N. Ban, P. Nissen, J. Hansen, P. B. Moore, T. A. Steitz, Science 2000, 289, 905-920.