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1
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0034979126
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Hydrogen bonding, base stacking, and steric effects in DNA replication
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Kool E.T. Hydrogen bonding, base stacking, and steric effects in DNA replication. Annu Rev Biophys Biomol Struct. 30:2001;1-22.
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Annu Rev Biophys Biomol Struct
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Kool, E.T.1
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2
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0034495733
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Aromatic clusters: A determinant of thermal stability of thermophilic proteins
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Aromatic interactions are proposed to contribute to the thermal stability of thermophilic proteins in this article
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Kannan N., Vishveshwara S. Aromatic clusters: a determinant of thermal stability of thermophilic proteins. Protein Eng. 13:2000;753-761. Aromatic interactions are proposed to contribute to the thermal stability of thermophilic proteins in this article.
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(2000)
Protein Eng
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, pp. 753-761
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Kannan, N.1
Vishveshwara, S.2
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3
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0036135139
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A possible role for pi-stacking in the self-assembly of amyloid fibrils
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Gazit E. A possible role for pi-stacking in the self-assembly of amyloid fibrils. FASEB J. 16:2002;77-83.
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FASEB J
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Gazit, E.1
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4
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0036216060
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Aromatic-aromatic interactions in and around alpha-helices
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Bhattacharyya R., Samanta U., Chakrabarti P. Aromatic-aromatic interactions in and around alpha-helices. Protein Eng. 15:2002;91-100.
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Protein Eng
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Bhattacharyya, R.1
Samanta, U.2
Chakrabarti, P.3
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5
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0036721382
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Aromatic side-chain interactions in proteins. I. Main structural features
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These papers (see also [6]) describe where aromatic interactions are favored in protein structures
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Thomas A., Meurisse R., Charloteaux B., Brasseur R. Aromatic side-chain interactions in proteins. I. Main structural features. Proteins. 48:2002;628-634. These papers (see also [6]) describe where aromatic interactions are favored in protein structures.
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Proteins
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Thomas, A.1
Meurisse, R.2
Charloteaux, B.3
Brasseur, R.4
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6
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0036721415
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Aromatic side-chain interactions in proteins. II. Near- and far-sequence Phe-X pairs
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Thomas A., Meurisse R., Brasseur R. Aromatic side-chain interactions in proteins. II. Near- and far-sequence Phe-X pairs. Proteins. 48:2002;635-644.
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Proteins
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Thomas, A.1
Meurisse, R.2
Brasseur, R.3
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7
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0032546782
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Pi-stacking interactions - Alive and well in proteins
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McGaughey G.B., Gagne M., Rappe A.K. Pi-stacking interactions - alive and well in proteins. J Biol Chem. 273:1998;15458-15463.
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McGaughey, G.B.1
Gagne, M.2
Rappe, A.K.3
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8
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0022419375
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Aromatic-aromatic interaction - A mechanism of protein-structure stabilization
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Burley S.K., Petsko G.A. Aromatic-aromatic interaction - a mechanism of protein-structure stabilization. Science. 229:1985;23-28.
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Science
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Burley, S.K.1
Petsko, G.A.2
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9
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0025756736
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Aromatic aromatic interactions and protein stability - Investigation by double-mutant cycles
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Serrano L., Bycroft M., Fersht A.R. Aromatic aromatic interactions and protein stability - investigation by double-mutant cycles. J Mol Biol. 218:1991;465-475.
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Serrano, L.1
Bycroft, M.2
Fersht, A.R.3
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10
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0037079679
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Investigation of a conserved stacking interaction in target site recognition by the U1A protein
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Shiels J.C., Tuite J.B., Nolan S.J., Baranger A.M. Investigation of a conserved stacking interaction in target site recognition by the U1A protein. Nucleic Acids Res. 30:2002;550-558.
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Nucleic Acids Res
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Shiels, J.C.1
Tuite, J.B.2
Nolan, S.J.3
Baranger, A.M.4
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11
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0033615310
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Recognition of an essential adenine at a protein-RNA interface: Comparison of the contributions of hydrogen bonds and a stacking interaction
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Nolan S.J., Shiels J.C., Tuite J.B., Cecere K.L., Baranger A.M. Recognition of an essential adenine at a protein-RNA interface: comparison of the contributions of hydrogen bonds and a stacking interaction. J Am Chem Soc. 121:1999;8951-8952.
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J Am Chem Soc
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Nolan, S.J.1
Shiels, J.C.2
Tuite, J.B.3
Cecere, K.L.4
Baranger, A.M.5
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13
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0001227655
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The nature of pi-pi Interactions
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Hunter C.A., Sanders J.K.M. The nature of pi-pi Interactions. J Am Chem Soc. 112:1990;5525-5534.
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J Am Chem Soc
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Hunter, C.A.1
Sanders, J.K.M.2
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14
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0001017381
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Theoretical studies of the supramolecular synthon benzene-hexafluorobenzene
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West J., Mecozzi S., Dougherty D.A. Theoretical studies of the supramolecular synthon benzene-hexafluorobenzene. J Phys Org Chem. 10:1997;347-350.
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J Phys Org Chem
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, pp. 347-350
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West, J.1
Mecozzi, S.2
Dougherty, D.A.3
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15
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0343417831
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Interaction between stacked aryl groups in 1,8- diarylnaphthalenes - Dominance of polar/pi over charge-transfer effects
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Cozzi F., Siegel J.S. Interaction between stacked aryl groups in 1,8- diarylnaphthalenes - dominance of polar/pi over charge-transfer effects. Pure Appl Chem. 67:1995;683-689.
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Pure Appl Chem
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, pp. 683-689
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Cozzi, F.1
Siegel, J.S.2
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16
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0034721423
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Three-state, conformational probe for hydrophobic, pi-stacking interactions in aqueous and mixed aqueous solvent systems: Anisotropic solvation of aromatic rings
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Sindkhedkar M.D., Mulla H.R., Cammers-Goodwin A. Three-state, conformational probe for hydrophobic, pi-stacking interactions in aqueous and mixed aqueous solvent systems: anisotropic solvation of aromatic rings. J Am Chem Soc. 122:2000;9271-9277.
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J Am Chem Soc
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, pp. 9271-9277
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Sindkhedkar, M.D.1
Mulla, H.R.2
Cammers-Goodwin, A.3
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17
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0034703708
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Solvophobically driven pi-stacking of phenylene ethynylene macrocycles and oligomers
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Lahiri S., Thompson J.L., Moore J.S. Solvophobically driven pi-stacking of phenylene ethynylene macrocycles and oligomers. J Am Chem Soc. 122:2000;11315-11319.
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J Am Chem Soc
, vol.122
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Lahiri, S.1
Thompson, J.L.2
Moore, J.S.3
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18
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0037117444
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Helicogenicity of solvents in the conformational equilibrium of oligo(m-phenylene ethynylene)s: Implications for foldamer research
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This is a thorough solvent study of aromatic interactions
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Hill D.J., Moore J.S. Helicogenicity of solvents in the conformational equilibrium of oligo(m-phenylene ethynylene)s: implications for foldamer research. Proc Natl Acad Sci USA. 99:2002;5053-5057. This is a thorough solvent study of aromatic interactions.
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(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 5053-5057
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Hill, D.J.1
Moore, J.S.2
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19
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0029935228
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Aromatic pi-stacking in solution as revealed through the aggregation of phenylacetylene macrocycles
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Shetty A.S., Zhang J.S., Moore J.S. Aromatic pi-stacking in solution as revealed through the aggregation of phenylacetylene macrocycles. J Am Chem Soc. 118:1996;1019-1027.
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J Am Chem Soc
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Shetty, A.S.1
Zhang, J.S.2
Moore, J.S.3
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20
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0037093976
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M-Diethynylbenzene macrocycles: Syntheses and self-association behavior in solution
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Tobe Y., Utsumi N., Kawabata K., Nagano A., Adachi K., Araki S., Sonoda M., Hirose K., Naemura K. m-Diethynylbenzene macrocycles: syntheses and self-association behavior in solution. J Am Chem Soc. 124:2002;5350-5364.
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J Am Chem Soc
, vol.124
, pp. 5350-5364
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Tobe, Y.1
Utsumi, N.2
Kawabata, K.3
Nagano, A.4
Adachi, K.5
Araki, S.6
Sonoda, M.7
Hirose, K.8
Naemura, K.9
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21
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0034720952
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Solvent-dependent stabilization of the E configuration of propargylic secondary amides
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Gardner R.R., McKay S.L., Gellman S.H. Solvent-dependent stabilization of the E configuration of propargylic secondary amides. Org Lett. 2:2000;2335-2338.
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(2000)
Org Lett
, vol.2
, pp. 2335-2338
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Gardner, R.R.1
McKay, S.L.2
Gellman, S.H.3
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22
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0034802469
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H-1 NMR investigation of solvent effects in aromatic stacking interactions
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This paper provides a clear example of the contribution of both solvophobic and electrostatic contributions to aromatic interactions
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Cubberley M.S., Iverson B.L. H-1 NMR investigation of solvent effects in aromatic stacking interactions. J Am Chem Soc. 123:2001;7560-7563. This paper provides a clear example of the contribution of both solvophobic and electrostatic contributions to aromatic interactions.
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(2001)
J Am Chem Soc
, vol.123
, pp. 7560-7563
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Cubberley, M.S.1
Iverson, B.L.2
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23
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0001660487
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Structure-activity relationship for quantifying aromatic interactions
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Carver FJ, Hunter CA, Seward EM: Structure-activity relationship for quantifying aromatic interactions. Chem Commun. 1998:775-776.
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(1998)
Chem Commun
, pp. 775-776
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Carver, F.J.1
Hunter, C.A.2
Seward, E.M.3
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24
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12044259820
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Chemistry of synthetic receptors and functional-group arrays. 24. Molecular torsion balance for weak molecular recognition forces - Effects of tilted-t edge-to-face aromatic interactions on conformational selection and solid-state structure
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Paliwal S., Geib S., Wilcox C.S. Chemistry of synthetic receptors and functional-group arrays. 24. Molecular torsion balance for weak molecular recognition forces - effects of tilted-t edge-to-face aromatic interactions on conformational selection and solid-state structure. J Am Chem Soc. 116:1994;4497-4498.
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J Am Chem Soc
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Paliwal, S.1
Geib, S.2
Wilcox, C.S.3
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25
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0032483756
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Measurements of molecular electrostatic field effects in edge-to-face aromatic interactions and CH-pi interactions with implications for protein folding and molecular recognition
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Kim E., Paliwal S., Wilcox C.S. Measurements of molecular electrostatic field effects in edge-to-face aromatic interactions and CH-pi interactions with implications for protein folding and molecular recognition. J Am Chem Soc. 120:1998;11192-11193.
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J Am Chem Soc
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Kim, E.1
Paliwal, S.2
Wilcox, C.S.3
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26
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85047696400
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Influence of highly preorganised 7,7-diphenylnorbornane in the free energy of edge-to-face aromatic interactions
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Martinez A.G., Barcina J.O., Cerezo A.D. Influence of highly preorganised 7,7-diphenylnorbornane in the free energy of edge-to-face aromatic interactions. Chem Eur J. 7:2001;1171-1175.
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Chem Eur J
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Martinez, A.G.1
Barcina, J.O.2
Cerezo, A.D.3
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27
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0035914626
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Quantitative measurements of edge-to-face aromatic interactions by using chemical double-mutant cycles
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Carver F.J., Hunter C.A., Jones P.S., Livingstone D.J., McCabe J.F., Seward E.M., Tiger P., Spey S.E. Quantitative measurements of edge-to-face aromatic interactions by using chemical double-mutant cycles. Chem Eur J. 7:2001;4854-4862.
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Chem Eur J
, vol.7
, pp. 4854-4862
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Carver, F.J.1
Hunter, C.A.2
Jones, P.S.3
Livingstone, D.J.4
McCabe, J.F.5
Seward, E.M.6
Tiger, P.7
Spey, S.E.8
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28
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0035914642
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A supramolecular system for quantifying aromatic stacking interactions
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Adams H., Hunter C.A., Lawson K.R., Perkins J., Spey S.E., Urch C.J., Sanderson J.M. A supramolecular system for quantifying aromatic stacking interactions. Chem Eur J. 7:2001;4863-4877.
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(2001)
Chem Eur J
, vol.7
, pp. 4863-4877
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Adams, H.1
Hunter, C.A.2
Lawson, K.R.3
Perkins, J.4
Spey, S.E.5
Urch, C.J.6
Sanderson, J.M.7
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29
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0035902812
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Quantitative determination of intermolecular interactions with fluorinated aromatic rings
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Adams H., Blanco J.L.J., Chessari G., Hunter C.A., Low C.M.R., Sanderson J.M., Vinter J.G. Quantitative determination of intermolecular interactions with fluorinated aromatic rings. Chem Eur J. 7:2001;3494-3503.
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(2001)
Chem Eur J
, vol.7
, pp. 3494-3503
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Adams, H.1
Blanco, J.L.J.2
Chessari, G.3
Hunter, C.A.4
Low, C.M.R.5
Sanderson, J.M.6
Vinter, J.G.7
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30
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0035902252
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Model systems for flavoenzyme activity. Control of flavin recognition via specific electrostatic interactions
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Goodman A.J., Breinlinger E.C., McIntosh C.M., Grimaldi L.N., Rotello V.M. Model systems for flavoenzyme activity. Control of flavin recognition via specific electrostatic interactions. Org Lett. 3:2001;1531-1534.
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(2001)
Org Lett
, vol.3
, pp. 1531-1534
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Goodman, A.J.1
Breinlinger, E.C.2
McIntosh, C.M.3
Grimaldi, L.N.4
Rotello, V.M.5
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31
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0037028989
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Unexpected substituent effects in offset pi-pi stacked interactions in water
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Rashkin M.J., Waters M.L. Unexpected substituent effects in offset pi-pi stacked interactions in water. J Am Chem Soc. 124:2002;1860-1861.
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(2002)
J Am Chem Soc
, vol.124
, pp. 1860-1861
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Rashkin, M.J.1
Waters, M.L.2
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32
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0037151644
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Contribution of aromatic Interactions to α-helix stability
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Butterfield S.M., Patel P.R., Waters M.L. Contribution of aromatic Interactions to α-helix stability. J Am Chem Soc. 124:2002;9751-9755.
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(2002)
J Am Chem Soc
, vol.124
, pp. 9751-9755
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Butterfield, S.M.1
Patel, P.R.2
Waters, M.L.3
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33
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0037077578
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Selective aromatic interactions in β-hairpin peptides
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This paper clearly demonstrates the selectivity of aromatic interactions relative to aliphatic interactions in a peptide model system
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Tatko C.D., Waters M.L. Selective aromatic interactions in β-hairpin peptides. J Am Chem Soc. 124:2002;9372-9373. This paper clearly demonstrates the selectivity of aromatic interactions relative to aliphatic interactions in a peptide model system.
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(2002)
J Am Chem Soc
, vol.124
, pp. 9372-9373
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Tatko, C.D.1
Waters, M.L.2
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34
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0034654495
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Factors contributing to aromatic stacking in water: Evaluation in the context of DNA
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This is a thorough paper investigating the correlation between a dangling aromatic group and duplex DNA stability
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Guckian K.M., Schweitzer B.A., Ren R.X.F., Sheils C.J., Tahmassebi D.C., Kool E.T. Factors contributing to aromatic stacking in water: evaluation in the context of DNA. J Am Chem Soc. 122:2000;2213-2222. This is a thorough paper investigating the correlation between a dangling aromatic group and duplex DNA stability.
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(2000)
J Am Chem Soc
, vol.122
, pp. 2213-2222
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Guckian, K.M.1
Schweitzer, B.A.2
Ren, R.X.F.3
Sheils, C.J.4
Tahmassebi, D.C.5
Kool, E.T.6
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35
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0036009267
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Modified purine nucleosides as dangling ends of DNA duplexes: The effect of the nucleobase polarizability on stacking interactions
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Rosemeyer H, Seela F: Modified purine nucleosides as dangling ends of DNA duplexes: The effect of the nucleobase polarizability on stacking interactions. J Chem Soc Perkin Trans. 2002:746-750.
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(2002)
J Chem Soc Perkin Trans
, pp. 746-750
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Rosemeyer, H.1
Seela, F.2
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36
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0037165683
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On the effect of covalently appended quinolones on termini of DNA duplexes
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This paper provides a detailed structural investigation of a dangling aromatic group and demonstrates that not all dangling aromatics stack at the terminus of the duplex
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Tuma J., Connors W.H., Stitelman D.H., Richert C. On the effect of covalently appended quinolones on termini of DNA duplexes. J Am Chem Soc. 124:2002;4236-4246. This paper provides a detailed structural investigation of a dangling aromatic group and demonstrates that not all dangling aromatics stack at the terminus of the duplex.
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(2002)
J Am Chem Soc
, vol.124
, pp. 4236-4246
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Tuma, J.1
Connors, W.H.2
Stitelman, D.H.3
Richert, C.4
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37
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0035857392
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Beyond the hydrophobic effect: Attractions involving heteroaromatic rings in aqueous solution
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This paper provides the only example of the stacking of heteroaromatic rings in a context other than nucleic acids
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McKay S.L., Haptonstall B., Gellman S.H. Beyond the hydrophobic effect: attractions involving heteroaromatic rings in aqueous solution. J Am Chem Soc. 123:2001;1244-1245. This paper provides the only example of the stacking of heteroaromatic rings in a context other than nucleic acids.
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(2001)
J Am Chem Soc
, vol.123
, pp. 1244-1245
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McKay, S.L.1
Haptonstall, B.2
Gellman, S.H.3
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