-
1
-
-
0032548904
-
Adaptation of protein surfaces to subcellular location
-
Andrade M.A., et al. Adaptation of protein surfaces to subcellular location. J. Mol. Biol. 276:1998;517-525.
-
(1998)
J. Mol. Biol.
, vol.276
, pp. 517-525
-
-
Andrade, M.A.1
-
2
-
-
0034177264
-
Antagonists of protein-protein interactions
-
Cochran A.G. Antagonists of protein-protein interactions. Chem. Biol. 7:2000;R85-R94.
-
(2000)
Chem. Biol.
, vol.7
-
-
Cochran, A.G.1
-
3
-
-
0037061646
-
Inhibition of protein-protein association by small molecules: Approaches and progress
-
Toogood P.L. Inhibition of protein-protein association by small molecules: approaches and progress. J. Med. Chem. 45:2002;1543-1558.
-
(2002)
J. Med. Chem.
, vol.45
, pp. 1543-1558
-
-
Toogood, P.L.1
-
5
-
-
12944281813
-
Structure-based design of an osteoclast-selective nonpeptide Src homology 2 inhibitor with in vivo antiresorptive activity
-
Shakespeare W., et al. Structure-based design of an osteoclast-selective nonpeptide Src homology 2 inhibitor with in vivo antiresorptive activity. Proc. Natl. Acad. Sci. U. S. A. 97:2000;9373-9378.
-
(2000)
Proc. Natl. Acad. Sci. U. S. A.
, vol.97
, pp. 9373-9378
-
-
Shakespeare, W.1
-
6
-
-
0033757840
-
From structure to function: Approaches and limitations
-
Thornton J.M., et al. From structure to function: approaches and limitations. Nat. Struct. Biol. 7:2000;991-994.
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 991-994
-
-
Thornton, J.M.1
-
7
-
-
0035141353
-
Dynamical view of the positions of key side chains in protein-protein recognition
-
Kimura S.R., et al. Dynamical view of the positions of key side chains in protein-protein recognition. Biophys. J. 80:2001;635-642.
-
(2001)
Biophys. J.
, vol.80
, pp. 635-642
-
-
Kimura, S.R.1
-
8
-
-
0036606483
-
Principles of docking: An overview of search algorithms and a guide to scoring functions
-
Halperin I., et al. Principles of docking: An overview of search algorithms and a guide to scoring functions. Proteins. 47:2002;409-443.
-
(2002)
Proteins
, vol.47
, pp. 409-443
-
-
Halperin, I.1
-
9
-
-
0032897494
-
An analysis of conformational changes on protein-protein associations: Implications for predictive docking
-
Betts M.J., Sternberg M.J.E. An analysis of conformational changes on protein-protein associations: Implications for predictive docking. Protein Eng. 12:1999;271-283.
-
(1999)
Protein Eng.
, vol.12
, pp. 271-283
-
-
Betts, M.J.1
Sternberg, M.J.E.2
-
10
-
-
0031746754
-
Statistical thermodynamic linkage between conformational and binding equilibria
-
Freire E. Statistical thermodynamic linkage between conformational and binding equilibria. Adv. Protein Chem. 51:1998;255-279.
-
(1998)
Adv. Protein Chem.
, vol.51
, pp. 255-279
-
-
Freire, E.1
-
11
-
-
0033784534
-
Induced fit in RNA-protein recognition
-
Williamson J.R. Induced fit in RNA-protein recognition. Nat. Struct. Biol. 7:2000;834-837.
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 834-837
-
-
Williamson, J.R.1
-
12
-
-
0015222647
-
The interpretation of protein structures: Estimation of static accessibility
-
Lee B., Richards F.M. The interpretation of protein structures: estimation of static accessibility. J. Mol. Biol. 55:1971;379-400.
-
(1971)
J. Mol. Biol.
, vol.55
, pp. 379-400
-
-
Lee, B.1
Richards, F.M.2
-
13
-
-
0015866154
-
Environment and exposure to solvent of protein atoms. Lysozyme and insulin
-
Shrake A., Rupley J.A. Environment and exposure to solvent of protein atoms. Lysozyme and insulin. J. Mol. Biol. 79:1973;351-371.
-
(1973)
J. Mol. Biol.
, vol.79
, pp. 351-371
-
-
Shrake, A.1
Rupley, J.A.2
-
14
-
-
0023645203
-
Interior and surface of monomeric proteins
-
Miller S., et al. Interior and surface of monomeric proteins. J. Mol. Biol. 196:1987;641-656.
-
(1987)
J. Mol. Biol.
, vol.196
, pp. 641-656
-
-
Miller, S.1
-
15
-
-
0000372879
-
Protein-protein interactions: Interface structure, binding thermodynamics, and mutational analysis
-
Stites W.E. Protein-protein interactions: interface structure, binding thermodynamics, and mutational analysis. Chem. Rev. 97:1997;1233-1250.
-
(1997)
Chem. Rev.
, vol.97
, pp. 1233-1250
-
-
Stites, W.E.1
-
16
-
-
0032479179
-
Anatomy of hot spots in protein interfaces
-
Bogan A.A., Thorn K.S. Anatomy of hot spots in protein interfaces. J. Mol. Biol. 280:1998;1-9.
-
(1998)
J. Mol. Biol.
, vol.280
, pp. 1-9
-
-
Bogan, A.A.1
Thorn, K.S.2
-
17
-
-
0003187567
-
The atomic structure of protein-protein recognition sites
-
LoConte L., et al. The atomic structure of protein-protein recognition sites. J. Mol. Biol. 285:1999;2177-2198.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 2177-2198
-
-
LoConte, L.1
-
18
-
-
0019837215
-
Nature of the charge distribution in proteins
-
Wada A., Nakamura H. Nature of the charge distribution in proteins. Nature. 293:1981;757-758.
-
(1981)
Nature
, vol.293
, pp. 757-758
-
-
Wada, A.1
Nakamura, H.2
-
20
-
-
0025789054
-
Side-chain clusters in protein structures and their role in protein folding
-
Heringa J., Argos P. Side-chain clusters in protein structures and their role in protein folding. J. Mol. Biol. 220:1991;151-171.
-
(1991)
J. Mol. Biol.
, vol.220
, pp. 151-171
-
-
Heringa, J.1
Argos, P.2
-
21
-
-
0344457301
-
Spatial sign-alternating charge clusters in globular proteins
-
Chirgadze Y.N., Larionova E.A. Spatial sign-alternating charge clusters in globular proteins. Protein Eng. 12:1999;101-105.
-
(1999)
Protein Eng.
, vol.12
, pp. 101-105
-
-
Chirgadze, Y.N.1
Larionova, E.A.2
-
22
-
-
0035448574
-
Ion pairs and thermotolerance of proteins from hyperthermophiles: A'traffic' rule for hot roads
-
Karshikoff A., Ladenstein R. Ion pairs and thermotolerance of proteins from hyperthermophiles: a'traffic' rule for hot roads. Trends Biochem. Sci. 26:2001;550-556.
-
(2001)
Trends Biochem. Sci.
, vol.26
, pp. 550-556
-
-
Karshikoff, A.1
Ladenstein, R.2
-
23
-
-
0029070109
-
Conserved structural features at protein surfaces: Small exterior hydrophobic clusters
-
Tisi L.C., Evans P.A. Conserved structural features at protein surfaces: small exterior hydrophobic clusters. J. Mol. Biol. 249:1995;251-258.
-
(1995)
J. Mol. Biol.
, vol.249
, pp. 251-258
-
-
Tisi, L.C.1
Evans, P.A.2
-
24
-
-
0034495733
-
Aromatic clusters: A determinant of thermal stability of thermophilic proteins
-
Kannan N., Vishveshwara S. Aromatic clusters: a determinant of thermal stability of thermophilic proteins. Protein Eng. 13:2000;753-761.
-
(2000)
Protein Eng.
, vol.13
, pp. 753-761
-
-
Kannan, N.1
Vishveshwara, S.2
-
25
-
-
0025663105
-
Strength and cooperativity of contributions of surface salt bridges to protein stability
-
Horovitz A., et al. Strength and cooperativity of contributions of surface salt bridges to protein stability. J. Mol. Biol. 216:1990;1031-1044.
-
(1990)
J. Mol. Biol.
, vol.216
, pp. 1031-1044
-
-
Horovitz, A.1
-
26
-
-
0033554840
-
Engineering a thermostable protein via optimization of charge-charge interactions on the protein surface
-
Loladze V.V., et al. Engineering a thermostable protein via optimization of charge-charge interactions on the protein surface. Biochemistry. 38:1999;16419-16423.
-
(1999)
Biochemistry
, vol.38
, pp. 16419-16423
-
-
Loladze, V.V.1
-
27
-
-
0032872888
-
Increasing protein stability by altering long-range coulombic interactions
-
Grimsley G.R., et al. Increasing protein stability by altering long-range coulombic interactions. Protein Sci. 8:1999;1843-1849.
-
(1999)
Protein Sci.
, vol.8
, pp. 1843-1849
-
-
Grimsley, G.R.1
-
28
-
-
0034673153
-
Contribution of surface salt bridges to protein stability
-
Strop P., Mayo S.L. Contribution of surface salt bridges to protein stability. Biochemistry. 39:2000;1251-1255.
-
(2000)
Biochemistry
, vol.39
, pp. 1251-1255
-
-
Strop, P.1
Mayo, S.L.2
-
29
-
-
0034620528
-
Rational modification of protein stability by the mutation of charged surface residues
-
Spector S., et al. Rational modification of protein stability by the mutation of charged surface residues. Biochemistry. 39:2000;872-879.
-
(2000)
Biochemistry
, vol.39
, pp. 872-879
-
-
Spector, S.1
-
30
-
-
0035964254
-
Stabilization of fibronectin type III domain by the removal of unfavorable electrostatic interactions on the protein surface
-
Koide A., et al. Stabilization of fibronectin type III domain by the removal of unfavorable electrostatic interactions on the protein surface. Biochemistry. 40:2001;10326-10333.
-
(2001)
Biochemistry
, vol.40
, pp. 10326-10333
-
-
Koide, A.1
-
31
-
-
0036228118
-
Distance dependence and salt sensitivity of pairwise coulombic interactions in a protein
-
Lee K.K., et al. Distance dependence and salt sensitivity of pairwise coulombic interactions in a protein. Protein Sci. 11:2002;1004-1016.
-
(2002)
Protein Sci.
, vol.11
, pp. 1004-1016
-
-
Lee, K.K.1
-
32
-
-
0037129945
-
Electrostatic interactions in ubiquitin: Stabilization of carboxylates by lysine amino groups
-
Sundd M., et al. Electrostatic interactions in ubiquitin: stabilization of carboxylates by lysine amino groups. Biochemistry. 41:2002;7586-7596.
-
(2002)
Biochemistry
, vol.41
, pp. 7586-7596
-
-
Sundd, M.1
-
33
-
-
0033852796
-
Charge-charge interactions influence the denatured state ensemble and contribute to protein stability
-
Pace C.N., et al. Charge-charge interactions influence the denatured state ensemble and contribute to protein stability. Protein Sci. 9:2000;1395-1398.
-
(2000)
Protein Sci.
, vol.9
, pp. 1395-1398
-
-
Pace, C.N.1
-
34
-
-
0034100848
-
Two exposed amino acid residues confer thermostability on a cold shock protein
-
Perl D., et al. Two exposed amino acid residues confer thermostability on a cold shock protein. Nat. Struct. Biol. 7:2000;380-383.
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 380-383
-
-
Perl, D.1
-
35
-
-
0036136161
-
Removal of surface charge-charge interactions from ubiquitin leaves the protein folded and very stable
-
Loladze V.V., Makhatadze G.I. Removal of surface charge-charge interactions from ubiquitin leaves the protein folded and very stable. Protein Sci. 11:2002;174-177.
-
(2002)
Protein Sci.
, vol.11
, pp. 174-177
-
-
Loladze, V.V.1
Makhatadze, G.I.2
-
36
-
-
0028213362
-
Protein stabilization by hydrophobic interactions at the surface
-
van den Burg B., et al. Protein stabilization by hydrophobic interactions at the surface. Eur. J. Biochem. 220:1994;981-985.
-
(1994)
Eur. J. Biochem.
, vol.220
, pp. 981-985
-
-
Van den Burg, B.1
-
37
-
-
0032032172
-
Surface-exposed phenylalanines in the RNP1/RNP2 motif stabilize the cold-shock protein CspB from Bacillus subtilis
-
Schindler T., et al. Surface-exposed phenylalanines in the RNP1/RNP2 motif stabilize the cold-shock protein CspB from Bacillus subtilis. Proteins. 30:1998;401-406.
-
(1998)
Proteins
, vol.30
, pp. 401-406
-
-
Schindler, T.1
-
38
-
-
0001843147
-
Coupling protein stability and protein function in Escherichia coli CspA
-
Hillier B.J., et al. Coupling protein stability and protein function in Escherichia coli CspA. Fold. Des. 3:1998;87-93.
-
(1998)
Fold. Des.
, vol.3
, pp. 87-93
-
-
Hillier, B.J.1
-
39
-
-
0028904906
-
Hydrogen bonds and the pH dependence of ovomucoid third domain stability
-
Swint-Kruse L., Robertson A.D. Hydrogen bonds and the pH dependence of ovomucoid third domain stability. Biochemistry. 34:1995;4724-4732.
-
(1995)
Biochemistry
, vol.34
, pp. 4724-4732
-
-
Swint-Kruse, L.1
Robertson, A.D.2
-
40
-
-
0028983182
-
A values of the denatured state are on average 0.4 units lower than those of model compounds
-
A values of the denatured state are on average 0.4 units lower than those of model compounds. Biochemistry. 34:1995;9424-9433.
-
(1995)
Biochemistry
, vol.34
, pp. 9424-9433
-
-
Oliveberg, M.1
-
41
-
-
0033551039
-
a values and the pH dependent stability of the N-terminal domain of L9 as probes of electrostatic interactions in the denatured state. Differentiation between local and nonlocal interactions
-
a values and the pH dependent stability of the N-terminal domain of L9 as probes of electrostatic interactions in the denatured state. Differentiation between local and nonlocal interactions. Biochemistry. 38:1999;4896-4903.
-
(1999)
Biochemistry
, vol.38
, pp. 4896-4903
-
-
Kuhlman, B.1
-
42
-
-
0032535188
-
Coulombic effects of remote subsites on the active site of ribonuclease A
-
Fisher B.M., et al. Coulombic effects of remote subsites on the active site of ribonuclease A. Biochemistry. 37:1998;17386-17401.
-
(1998)
Biochemistry
, vol.37
, pp. 17386-17401
-
-
Fisher, B.M.1
-
43
-
-
0035964164
-
Dissecting the electrostatic interactions and pH-dependent activity of a family 11 glycosidase
-
Joshi M.D., et al. Dissecting the electrostatic interactions and pH-dependent activity of a family 11 glycosidase. Biochemistry. 40:2001;10115-10139.
-
(2001)
Biochemistry
, vol.40
, pp. 10115-10139
-
-
Joshi, M.D.1
-
44
-
-
0033534526
-
RNA recognition by the human U1A protein is mediated by a network of local cooperative interactions that create the optimal binding surface
-
Kranz J.K., Hall K.B. RNA recognition by the human U1A protein is mediated by a network of local cooperative interactions that create the optimal binding surface. J. Mol. Biol. 285:1999;215-231.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 215-231
-
-
Kranz, J.K.1
Hall, K.B.2
-
45
-
-
0035919649
-
Covariance analysis of RNA recognition motifs identifies functionally linked amino acids
-
Crowder S., et al. Covariance analysis of RNA recognition motifs identifies functionally linked amino acids. J. Mol. Biol. 310:2001;793-800.
-
(2001)
J. Mol. Biol.
, vol.310
, pp. 793-800
-
-
Crowder, S.1
-
46
-
-
0032559428
-
RNA-binding mediates the local cooperativity between the β-sheet and the C-terminal tail of the human U1A RBD1 protein
-
Kranz J.K., Hall K.B. RNA-binding mediates the local cooperativity between the β-sheet and the C-terminal tail of the human U1A RBD1 protein. J. Mol. Biol. 275:1998;465-481.
-
(1998)
J. Mol. Biol.
, vol.275
, pp. 465-481
-
-
Kranz, J.K.1
Hall, K.B.2
-
47
-
-
0025126043
-
Strategy for analysing the co-operativity of intramolecular interactions in peptides and proteins
-
Horovitz A., Fersht A.R. Strategy for analysing the co-operativity of intramolecular interactions in peptides and proteins. J. Mol. Biol. 214:1990;613-617.
-
(1990)
J. Mol. Biol.
, vol.214
, pp. 613-617
-
-
Horovitz, A.1
Fersht, A.R.2
-
48
-
-
0036681440
-
a values in proteins
-
a values in proteins. Proteins. 48:2002;388-403.
-
(2002)
Proteins
, vol.48
, pp. 388-403
-
-
Forsyth, W.R.1
-
49
-
-
0032789936
-
Electrostatic interactions in the GCN4 leucine zipper: Substantial contributions arise from intramolecular interactions enhanced on binding
-
Hendsch Z.S., Tidor B. Electrostatic interactions in the GCN4 leucine zipper: Substantial contributions arise from intramolecular interactions enhanced on binding. Protein Sci. 8:1999;1381-1392.
-
(1999)
Protein Sci.
, vol.8
, pp. 1381-1392
-
-
Hendsch, Z.S.1
Tidor, B.2
-
50
-
-
0031891022
-
Computation of electrostatic complements to proteins: A case of charge stabilized binding
-
Chong L.T., et al. Computation of electrostatic complements to proteins: A case of charge stabilized binding. Protein Sci. 7:1998;206-210.
-
(1998)
Protein Sci.
, vol.7
, pp. 206-210
-
-
Chong, L.T.1
-
51
-
-
0023034393
-
The general control of amino acid biosynthetic genes in the yeast Saccharomyces cerevisiae
-
Hinnebusch A.G. The general control of amino acid biosynthetic genes in the yeast Saccharomyces cerevisiae. CRC Crit. Rev. Biochem. 21:1986;277-317.
-
(1986)
CRC Crit. Rev. Biochem.
, vol.21
, pp. 277-317
-
-
Hinnebusch, A.G.1
-
52
-
-
0023644679
-
Structure of ubiquitin refined at 1.8 Å resolution
-
Vijay-Kumar S., et al. Structure of ubiquitin refined at 1.8 Å resolution. J. Mol. Biol. 194:1987;531-544.
-
(1987)
J. Mol. Biol.
, vol.194
, pp. 531-544
-
-
Vijay-Kumar, S.1
-
53
-
-
0028004607
-
Crystal structure at 1.92 Å resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin
-
Oubridge C., et al. Crystal structure at 1.92 Å resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin. Nature. 372:1994;432-438.
-
(1994)
Nature
, vol.372
, pp. 432-438
-
-
Oubridge, C.1
-
54
-
-
0026331267
-
X-ray structure of the GCN4 leucine zipper, a two-stranded, parallel coiled coil
-
O'Shea E.K., et al. X-ray structure of the GCN4 leucine zipper, a two-stranded, parallel coiled coil. Science. 254:1991;539-544.
-
(1991)
Science
, vol.254
, pp. 539-544
-
-
O'Shea, E.K.1
|