Identification of a polymorphic, neuron-specific chromatin remodeling complex

Genes and Development

Volumn 16, Issue 19, 2002, Pages 2509-2517

  Olave, Ivan ^a   Wang, Weidong ^b   Xue, Yutong ^b   Kuo, Ann ^a   Crabtree, Gerald R ^a  

^a HOWARD HUGHES MEDICAL INSTITUTE   (United States)

^b NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

BAF53b; bBAF complexes; Chromatin remodeling; Neuron development

Indexed keywords

ADENOSINE TRIPHOSPHATASE; PROTEIN; PROTEIN BAF53B; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG;

ANIMAL EXPERIMENT; ARTICLE; CELL CYCLE PHASE; CHROMATIN; COMPLEX FORMATION; CONTROLLED STUDY; EMBRYO; FEMALE; GENETIC POLYMORPHISM; GENETIC TRANSCRIPTION; MOUSE; NERVE CELL; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN EXPRESSION; VERTEBRATE;

ACTINS; AMINO ACID SEQUENCE; ANIMALS; BRAIN; CHROMATIN; CHROMOSOMAL PROTEINS, NON-HISTONE; DNA HELICASES; DNA-BINDING PROTEINS; GENE EXPRESSION; HELA CELLS; HUMANS; MICE; MOLECULAR SEQUENCE DATA; NEURONS; NUCLEAR PROTEINS; POLYMORPHISM, GENETIC; SEQUENCE HOMOLOGY, AMINO ACID; TRANSCRIPTION FACTORS;

ANIMALIA; MURINAE; VERTEBRATA;

EID: 0036791792     PISSN: 08909369     EISSN: None     Source Type: Journal    
DOI: 10.1101/gad.992102     Document Type: Article

References (41)

1. Anderson, D.J. 2001. Stem cells and pattern formation in the nervous system: The possible versus the actual. Neuron 30: 19-35.
2. Armstrong, J.A., Bieker, J.J., and Emerson, B.M. 1998. A SWI/SNF-related chromatin remodeling complex, E-RC1, is required for tissue-specific transcriptional regulation by EKLF in vitro. Cell 95: 93-103.
3. Briscoe, J., Pierani, A., Jessell, T.M., and Ericson, J. 2000. A homeodomain protein code specifies progenitor cell identity and neuronal fate in the ventral neural tube. Cell 101: 435-445.
4. Bultman, S., Gebuhr, T., Yee, D., La Mantia, C., Nicholson, J., Gilliam, A., Randazzo, F., Metzger, D., Chambon, P., Crabtree, G., et al. 2000. A Brg1 null mutation in the mouse reveals functional differences among mammalian SWI/SNF complexes. Mol. Cell 6: 1287-1295.
5. Cairns, B.R., Lorch, Y., Li, Y., Zhang, M., Lacomis, L., Erdjument-Bromage, H., Tempst, P., Du, J., Laurent, B., and Kornberg, R.D. 1996. RSC, an essential, abundant chromatin-remodeling complex. Cell 87: 1249-1260.
6. Champagne, N., Bertos, N.R., Pelletier, N., Wang, A.H., Vezmar, M., Yang, Y., Heng, H.H., and Yang, X.J. 1999. Identification of a human histone acetyltransferase related to monocytic leukemia zinc finger protein. J. Biol. Chem. 274: 28528-28536.
7. Chen, G., Fernandez, J., Mische, S., and Courey, A.J. 1999. A functional interaction between the histone deacetylase Rpd3 and the corepressor groucho in Drosophila development. Genes & Dev. 13: 2218-2230.
8. Chi, T.H., Wan, M., Zhao, K., Taniuchi, I., Chen, L., Littman, D.R., and Crabtree, G.R. 2002. Reciprocal regulation of CD4/CD8 expression by SWI/SNF-like BAF complexes. Nature 418: 195-199.
9. Cote, J., Quinn, J., Workman, J.L., and Peterson, C.L. 1994. Stimulation of GAL4 derivative binding to nucleosomal DNA by the yeast SWI/SNF complex. Science 265: 53-60.
10. De Rubertis, F., Kadosh, D., Henchoz, S., Pauli, D., Reuter, G., Struhl, K., and Spierer, P. 1996. The histone deacetylase RPD3 counteracts genomic silencing in Drosophila and yeast. Nature 384: 589-591.
11. Desai, A.R. and McConnell, S.K. 2000. Progressive restriction in fate potential by neural progenitors during cerebral cortical development. Development 127: 2863-2872.
12. Dikstein, R., Zhou, S., and Tjian, R. 1996. Human TAFII105 is a cell type-specific TFIID subunit related to hTAFII130. Cell 87: 137-146.
13. Edlund, T. and Jessell, T.M. 1999. Progression from extrinsic to intrinsic signaling in cell fate specification: A view from the nervous system. Cell 96: 211-224.
14. Freiman, R.N., Albright, S.R., Zheng, S., Sha, W.C., Hammer, R.E., and Tjian, R. 2001. Requirement of tissue-selective TBP-associated factor TAFII105 in ovarian development. Science 293: 2084-2087.
15. Hiller, M.A., Lin, T.Y., Wood, C., and Fuller, M.T. 2001. Developmental regulation of transcription by a tissue-specific TAF homolog. Genes & Dev. 15: 1021-1030.
16. Kadam, S., McAlpine, G.S., Phelan, M.L., Kingston, R.E., Jones, K.A., and Emerson, B.M. 2000. Functional selectivity of recombinant mammalian SWI/SNF subunits. Genes & Dev. 14: 2441-2451.
17. Khavari, P.A., Peterson, C.L., Tamkun, J.W., Mendel, D.B., and Crabtree, G.R. 1993. BRG1 contains a conserved domain of the SWI2/SNF2 family necessary for normal mitotic growth and transcription. Nature 366: 170-174.
18. Kwon, H., Imbalzano, A.N., Khavari, P.A., Kingston, R.E., and Green, M.R. 1994. Nucleosome disruption and enhancement of activator binding by a human SWI/SNF complex. Nature 370: 477-481.
19. Lee, C.-H., Murphy, M.R., Lee, J.-S., and Chung, J.H. 1999. Targeting a SWI/SNF-related chromatin remodeling complex to the β-globin promoter in erythroid cells. Proc. Natl. Acad. Sci. 96: 12311-12315.
20. Lee, K.F. and Jessell, T.M. 1999. The specification of dorsal cell fates in the vertebrate central nervous system. Annu. Rev. Neurosci. 22: 261-294.
21. Lemon, B., Inouye, C., King, D.S., and Tjian, R. 2001. Selectivity of chromatin-remodeling cofactors for ligand-activated transcription. Nature 414: 924-928.
22. Livesey, F.J. and Cepko, C.L. 2001. Vertebrate neural cell-fate determination: Lessons from the retina. Nat. Rev. Neurosci. 2: 109-118.
23. Machida, Y., Murai, K., Miyake, K., and Iijima, S. 2001. Expression of chromatin remodeling factors during neural differentiation. J. Biochem. 129: 43-49.
24. Mannervik, M. and Levine, M. 1999. The Rpd3 histone deacetylase is required for segmentation of the Drosophila embryo. Proc. Natl. Acad. Sci. 96: 6797-6801.
25. Marquardt, T. and Pfaff, S.L. 2001. Cracking the transcriptional code for cell specification in the neural tube. Cell 106: 651-654.
26. Nie, Z., Xue, Y., Yang, D., Zhou, S., Deroo, B.J., Archer, T.K., and Wang, W. 2000. A specificity and targeting subunit of a human SWI/SNF family-related chromatin-remodeling complex. Mol. Cell. Biol. 20: 8879-8888.
27. Olave, I.A., Reck-Peterson, S.L., and Crabtree, G.R. 2002. Nuclear actin and actin-related proteins in chromatin remodeling. Annu. Rev. Biochem. 71: 755-781.
28. Papoulas, O., Beek, S.J., Moseley, S.L., McCallum, C.M., Sarte, M., Shearn, A., and Tamkun, J.W. 1998. The Drosophila tri-thorax group proteins BRM, ASH1 and ASH2 are subunits of distinct protein complexes. Development 125: 3955-3966.
29. Peterson, C.L. and Herskowitz, I. 1992. Characterization of the yeast SWI1, SWI2, and SWI3 genes, which encode a global activator of transcription. Cell 68: 573-583.
30. Pfaff, S.L., Mendelsohn, M., Stewart, C.L., Edlund, T., and Jessell, T.M. 1996. Requirement for LIM homeobox gene Isll in motor neuron generation reveals a motor neuron-dependent step in interneuron differentiation. Cell 84: 309-320.
31. Reyes, J.C., Barra, J., Muchardt, C., Camus, A., Babinet, C., and Yaniv, M. 1998. Altered control of cellular proliferation in the absence of mammalian brahma (SNF2α). EMBO J. 17: 6979-6991.
32. Shen, X., Mizuguchi, G., Hamiche, A., and Wu, C. 2000. A chromatin remodeling complex involved in transcription and DNA processing. Nature 406: 541-544.
33. Stern, M., Jensen, R., and Herskowitz, I. 1984. Five SWI genes are required for expression of the HO gene in yeast. J. Mol. Biol. 178: 853-868.
34. Stevens, C.F. 1998. Neuronal diversity: Too many cell types for comfort? Curr. Biol. 8: 708-710.
35. Thomas, T., Voss, A.K., Chowdhury, K., and Gruss, P. 2000. Querkopf, a MYST family histone acetyltransferase, is required for normal cerebral cortex development. Development 127: 2537-2548.
36. Tsuchida, T., Ensini, M., Morton, S.B., Baldassare, M., Edlund, T., Jessell, T.M., and Pfaff, S.L. 1994. Topographic organization of embryonic motor neurons defined by expression of LIM homeobox genes. Cell 79: 957-970.
37. Wang, W., Cote, J., Xue, Y., Zhou, S., Khavari, P.A., Biggar, S.R., Muchardt, C., Kalpana, G.V., Goff, S.P., Yaniv, M., et al. 1996a. Purification and biochemical heterogeneity of the mammalian SWI-SNF complex. EMBO J. 15:5370-5382.
38. Wang, W., Xue, Y., Zhou, S., Kuo, A., Cairns, B.R., and Crabtree, G.R. 1996b. Diversity and specialization of mammalian SWI/SNF complexes. Genes & Dev. 10: 2117-2130.
39. Xue, Y., Canman, J.C., Lee, C.S., Nie, Z., Yang, D., Moreno, G.T., Young, M.K., Salmon, E.D., and Wang, W. 2000. The human SWI/SNF-B chromatin remodeling complex is related to yeast Rsc and localizes at kinetochores of mitotic chromosomes. Proc. Natl. Acad. Sci. 97: 13015-13020.
40. Zhang, H.S. 2001. Defining glia cells during CNS development. Nat. Rev. Neurosci. 2: 840-843.
41. Zhao, K., Wang, W., Rando, O.J., Xue, Y., Swiderek, K., Kuo, A., and Crabtree, G.R. 1998. Rapid and phosphoinositol-dependent binding of the SWI/SNF-like BAF complex to chromatin after T lymphocyte receptor signaling. Cell 95: 625-636.