-
1
-
-
0035061474
-
Positive and negative selection in the DAZ gene family
-
Bielawski, J. P., and Z. Yang. 2001. Positive and negative selection in the DAZ gene family. Mol. Biol. Evol. 18:523-529.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 523-529
-
-
Bielawski, J.P.1
Yang, Z.2
-
3
-
-
0028300359
-
Modification of flower color in florist's chrysanthemum: Production of a white-flowering variety through molecular genetics
-
Courtney-Gutterson, N., C. Napoli, C. Lemieux, A. Morgan, E. Firoozabady, and K. E. Robison. 1994. Modification of flower color in florist's chrysanthemum: production of a white-flowering variety through molecular genetics. Biotechnology 12:268-271.
-
(1994)
Biotechnology
, vol.12
, pp. 268-271
-
-
Courtney-Gutterson, N.1
Napoli, C.2
Lemieux, C.3
Morgan, A.4
Firoozabady, E.5
Robison, K.E.6
-
4
-
-
0000354321
-
The Compositae revisited
-
Cronquist, A. 1977. The Compositae revisited. Brittonia 29:137-153.
-
(1977)
Brittonia
, vol.29
, pp. 137-153
-
-
Cronquist, A.1
-
5
-
-
13044283060
-
Molecular genetics of ecological diversification: Duplication and rapid evolution of toxin genes of the venomous gastropod Conus
-
Duda, T. F. Jr., and S. R. Palumbi. 1999. Molecular genetics of ecological diversification: duplication and rapid evolution of toxin genes of the venomous gastropod Conus. Proc. Natl. Acad. Sci. U. S. A. 96:6820-6823.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 6820-6823
-
-
Duda T.F., Jr.1
Palumbi, S.R.2
-
6
-
-
0028947929
-
Evolution of the chalcone synthase gene family in the genus Ipomoea
-
Durbin, M. L., G. H. Learn, G. A. Huttley, and M. T. Clegg. 1995. Evolution of the chalcone synthase gene family in the genus Ipomoea. Proc. Natl. Acad. Sci. USA 92:3338-3342.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 3338-3342
-
-
Durbin, M.L.1
Learn, G.H.2
Huttley, G.A.3
Clegg, M.T.4
-
7
-
-
0033976087
-
Molecular evolution of the chalcone synthase multigene family in the morning glory genome
-
Durbin, M. L., B. McCaig, and M. T. Clegg. 2000. Molecular evolution of the chalcone synthase multigene family in the morning glory genome. Plant Mol. Biol. 42:79-92.
-
(2000)
Plant Mol. Biol.
, vol.42
, pp. 79-92
-
-
Durbin, M.L.1
McCaig, B.2
Clegg, M.T.3
-
8
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
Felsenstein, J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17:368-376.
-
(1981)
J. Mol. Evol.
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
9
-
-
0032893932
-
Preservation of duplicate genes by complementary, degenerative mutations
-
Force, A., M. Lynch, F. B. Pickett, A. Amores, Y. L. Yan, and J. Postlethwait. 1999. Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151:1531-1545.
-
(1999)
Genetics
, vol.151
, pp. 1531-1545
-
-
Force, A.1
Lynch, M.2
Pickett, F.B.3
Amores, A.4
Yan, Y.L.5
Postlethwait, J.6
-
10
-
-
0022376704
-
Dating the human-ape split by a molecular clock of mitochondrial DNA
-
Hasegawa, M., H. Kishino, and T. Yano. 1985. Dating the human-ape split by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22:160-174.
-
(1985)
J. Mol. Evol.
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
11
-
-
0029278107
-
Chalcone synthase-like genes active during corolla development are differentially expressed and encode enzymes with different catalytic properties in Gerbera hybrida (Asteraceae)
-
Helariutta, Y., P. Elomma, M. Kotilainen, R. J. Griesbach, J. Schroder, and T. H. Teeri. 1995. Chalcone synthase-like genes active during corolla development are differentially expressed and encode enzymes with different catalytic properties in Gerbera hybrida (Asteraceae). Plant Mol. Biol. 28:47-60.
-
(1995)
Plant Mol. Biol.
, vol.28
, pp. 47-60
-
-
Helariutta, Y.1
Elomma, P.2
Kotilainen, M.3
Griesbach, R.J.4
Schroder, J.5
Teeri, T.H.6
-
12
-
-
0029810640
-
Duplication and functional divergence in the chalcone synthase gene family of Asteraceae: Evolution with substrate change and catalytic simplification
-
Helariutta, Y., M. Kotilainen, P. Elomaa, N. Kalkkinen, K. Bremer, T. H. Teeri, and V. A. Albert. 1996. Duplication and functional divergence in the chalcone synthase gene family of Asteraceae: evolution with substrate change and catalytic simplification. Proc. Natl. Acad. Sci. USA 93: 9033-9038.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 9033-9038
-
-
Helariutta, Y.1
Kotilainen, M.2
Elomaa, P.3
Kalkkinen, N.4
Bremer, K.5
Teeri, T.H.6
Albert, V.A.7
-
13
-
-
0030839487
-
Molecular evolution and functional relevance of the chalcone synthase genes of pea
-
Ito, M., Y. Ichinose, H. Kato, T. Shiraishi, and T. Yamada. 1997. Molecular evolution and functional relevance of the chalcone synthase genes of pea. Mol. Gen. Genet. 255:28-37.
-
(1997)
Mol. Gen. Genet.
, vol.255
, pp. 28-37
-
-
Ito, M.1
Ichinose, Y.2
Kato, H.3
Shiraishi, T.4
Yamada, T.5
-
14
-
-
0000732090
-
Evolution of protein molecules
-
H. N. Munro, ed. Academic Press, New York
-
Jukes, T. H., and C. R. Cantor. 1969. Evolution of protein molecules. Pp. 21-123 in H. N. Munro, ed. Mammalian protein metabolism. Academic Press, New York.
-
(1969)
Mammalian protein metabolism
, pp. 21-123
-
-
Jukes, T.H.1
Cantor, C.R.2
-
15
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
-
(1980)
J. Mol. Evol.
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
17
-
-
0028155769
-
The flavonoid biosynthetic pathway in plants: Function and evolution
-
Koes, R. E., F. Quattrocchio, and J. N. M. Mol. 1994. The flavonoid biosynthetic pathway in plants: function and evolution. BioEssays 16:123-132.
-
(1994)
BioEssays
, vol.16
, pp. 123-132
-
-
Koes, R.E.1
Quattrocchio, F.2
Mol, J.N.M.3
-
18
-
-
0024440265
-
Cloning and molecular characterization of the chalcone synthase multigene family of Petunia hybrida
-
Koes, R. E., C. E. Spelt, P. J. Van Den Elzen, and J. N. M. Mol. 1989. Cloning and molecular characterization of the chalcone synthase multigene family of Petunia hybrida. Gene 81:245-257.
-
(1989)
Gene
, vol.81
, pp. 245-257
-
-
Koes, R.E.1
Spelt, C.E.2
Van Den Elzen, P.J.3
Mol, J.N.M.4
-
19
-
-
0003496662
-
-
Arizona State University, Tempe, Ariz
-
Kumar, S., K. Tamura, I. B. Jakobsen, and M. Nei. 2001. MEGA2: molecular evolutionary genetics analysis software. Arizona State University, Tempe, Ariz.
-
(2001)
MEGA2: molecular evolutionary genetics analysis software
-
-
Kumar, S.1
Tamura, K.2
Jakobsen, I.B.3
Nei, M.4
-
20
-
-
0003070062
-
Accelerated evolution following gene duplication and its implications for the neutralist-selectionist controversy
-
T. Otha and K. Aoki, eds. Japan Scientific Press, Tokyo
-
Li, W.-H. 1985. Accelerated evolution following gene duplication and its implications for the neutralist-selectionist controversy. Pp. 333-352 in T. Otha and K. Aoki, eds. Population genetics and molecular evolution. Japan Scientific Press, Tokyo.
-
(1985)
Population genetics and molecular evolution
, pp. 333-352
-
-
Li, W.-H.1
-
21
-
-
0027403961
-
Unbiased estimation of the rates of synonymous and nonsynonymous substitution
-
-. 1993. Unbiased estimation of the rates of synonymous and nonsynonymous substitution. J. Mol. Evol. 36:96-99.
-
(1993)
J. Mol. Evol.
, vol.36
, pp. 96-99
-
-
-
22
-
-
0003421005
-
-
Sinauer Associates, Inc., Sunderland, Mass
-
-. 1997. Molecular evolution. Sinauer Associates, Inc., Sunderland, Mass.
-
(1997)
Molecular evolution
-
-
-
23
-
-
0026486403
-
Relative-rate test for nucleotide substitutions between two lineages
-
Li, P., and J. Bousquet. 1992. Relative-rate test for nucleotide substitutions between two lineages. Mol. Biol. Evol. 9:1185-1189.
-
(1992)
Mol. Biol. Evol.
, vol.9
, pp. 1185-1189
-
-
Li, P.1
Bousquet, J.2
-
24
-
-
0028024626
-
A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates with application to the chloroplast genome
-
Muse, S. V., and B. S. Gaut. 1994. A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates with application to the chloroplast genome. Mol. Bio. Evol. 11:715-724.
-
(1994)
Mol. Bio. Evol.
, vol.11
, pp. 715-724
-
-
Muse, S.V.1
Gaut, B.S.2
-
25
-
-
0022507362
-
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
-
Nei, M., and T. Gojobori. 1986. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Bio. Evol. 3:418-426.
-
(1986)
Mol. Bio. Evol.
, vol.3
, pp. 418-426
-
-
Nei, M.1
Gojobori, T.2
-
26
-
-
84986414519
-
Nomenclature for incompletely specified bases in nucleic acid sequences. Recommendations
-
NC-IUB (Nomenclature Committee of the International Union of Biochemistry). 1985. Nomenclature for incompletely specified bases in nucleic acid sequences. Recommendations. Eur. J. Biochem. 150:1.
-
(1985)
Eur. J. Biochem.
, vol.150
, pp. 1
-
-
-
28
-
-
0027327059
-
Pattern of nucleotide substitution in growth hormone-prolactin gene family: A paradigm for evolution by gene duplication
-
Ohta, T. 1993. Pattern of nucleotide substitution in growth hormone-prolactin gene family: a paradigm for evolution by gene duplication. Genetics 134:1271-1276.
-
(1993)
Genetics
, vol.134
, pp. 1271-1276
-
-
Ohta, T.1
-
30
-
-
0034129663
-
RRTree: Relative-rate tests between groups of sequences on a phylogenetic tree
-
Robinson-Rechavi, M., and D. Huchon. 2000. RRTree: relative-rate tests between groups of sequences on a phylogenetic tree. Bioinformatics 16:296-297.
-
(2000)
Bioinformatics
, vol.16
, pp. 296-297
-
-
Robinson-Rechavi, M.1
Huchon, D.2
-
31
-
-
0023505583
-
Organization and differential activation of a gene family encoding the plant defense enzyme chalcone synthase in Phaseolus vulgaris
-
Ryder, T. B., S. A. Hedrick, J. N. Bell, X. Liang, S. D. Clouse, and C. J. Lamb. 1987. Organization and differential activation of a gene family encoding the plant defense enzyme chalcone synthase in Phaseolus vulgaris. Mol. Gen. Genet. 210:219-233.
-
(1987)
Mol. Gen. Genet.
, vol.210
, pp. 219-233
-
-
Ryder, T.B.1
Hedrick, S.A.2
Bell, J.N.3
Liang, X.4
Clouse, S.D.5
Lamb, C.J.6
-
32
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
33
-
-
0032953315
-
Molecular evolution of the COX7A gene family in primates
-
Schmidt, T. R., M. Goodman, and L. I. Grossman. 1999. Molecular evolution of the COX7A gene family in primates. Mol. Biol. Evol. 16:619-626.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 619-626
-
-
Schmidt, T.R.1
Goodman, M.2
Grossman, L.I.3
-
35
-
-
0031574072
-
The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson, J. D., T J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
36
-
-
0028913554
-
Reaction mechanisms of homodimeric plant polyketide synthases (stilbene and chalcone synthase). A single active site for the condensing reaction is sufficient for synthesis of stilbenes, chalcones, and 6′-deoxychalcones
-
Tropf, S., B. Karcher, G. Schroder, and J. Schroder. 1995. Reaction mechanisms of homodimeric plant polyketide synthases (stilbene and chalcone synthase). A single active site for the condensing reaction is sufficient for synthesis of stilbenes, chalcones, and 6′-deoxychalcones. J. Biol. Chem. 270:7922-7928.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 7922-7928
-
-
Tropf, S.1
Karcher, B.2
Schroder, G.3
Schroder, J.4
-
37
-
-
0028321623
-
Evidence that stibene synthases have developed from chalcone synthases several times in the course of evolution
-
Tropf, S., T Lanz, S. A. Rensing, J. Schroder, and G. Schroder. 1994. Evidence that stibene synthases have developed from chalcone synthases several times in the course of evolution. J. Mol. Evol. 38:610-618.
-
(1994)
J. Mol. Evol.
, vol.38
, pp. 610-618
-
-
Tropf, S.1
Lanz, T.2
Rensing, S.A.3
Schroder, J.4
Schroder, G.5
-
38
-
-
0034483261
-
Molecular evolution of the exon 2 of CHS genes and the possibility of its application to plant phylogenetic analysis
-
Wang, J., L. Qu, J. Chen, H. Gu, and Z. Chen. 2000. Molecular evolution of the exon 2 of CHS genes and the possibility of its application to plant phylogenetic analysis. Chinese Sci. Bull. 45:1735-1742.
-
(2000)
Chinese Sci. Bull.
, vol.45
, pp. 1735-1742
-
-
Wang, J.1
Qu, L.2
Chen, J.3
Gu, H.4
Chen, Z.5
-
39
-
-
0024711702
-
Differential regulation of soybean chalcone synthase genes in plant defence, symbiosis and upon environmental stimuli
-
Wingender, R., H. Rohrig, C. Horicke, D. Wing, and J. Schell. 1989. Differential regulation of soybean chalcone synthase genes in plant defence, symbiosis and upon environmental stimuli. Mol. Gen. Genet. 218:315-322.
-
(1989)
Mol. Gen. Genet.
, vol.218
, pp. 315-322
-
-
Wingender, R.1
Rohrig, H.2
Horicke, C.3
Wing, D.4
Schell, J.5
-
40
-
-
0013262305
-
Diverse chalcone synthase superfamily enzymes from the most primitive vascular plant, Psilotum nudum
-
Yamazaki, Y., D. Suh, W. Sitthithaworn, K. Ishiguro, Y. Kobayashi, M. Shibuya, Y. Ebizuka, and U. Sankawa. 2001. Diverse chalcone synthase superfamily enzymes from the most primitive vascular plant, Psilotum nudum. Planta 214:75-84.
-
(2001)
Planta
, vol.214
, pp. 75-84
-
-
Yamazaki, Y.1
Suh, D.2
Sitthithaworn, W.3
Ishiguro, K.4
Kobayashi, Y.5
Shibuya, M.6
Ebizuka, Y.7
Sankawa, U.8
-
41
-
-
0028064845
-
Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
-
Yang, Z. 1994. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J. Mol. Evol. 39:306-314.
-
(1994)
J. Mol. Evol.
, vol.39
, pp. 306-314
-
-
Yang, Z.1
-
42
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
-. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13:555-556 [http://abacus.gene.ucl.ac.uk/software/paml.html].
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 555-556
-
-
-
43
-
-
0031897964
-
Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution
-
-. 1998. Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution. Mol. Biol. Evol. 15:568-573.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 568-573
-
-
-
44
-
-
0031960185
-
Synonymous and nonsynonymous rate variation in nuclear genes of mammals
-
Yang, Z., and R. Nielsen. 1998. Synonymous and nonsynonymous rate variation in nuclear genes of mammals. J. Mol. Evol. 46:409-418.
-
(1998)
J. Mol. Evol.
, vol.46
, pp. 409-418
-
-
Yang, Z.1
Nielsen, R.2
-
45
-
-
0036270185
-
Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages
-
-. 2002. Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages. Mol. Biol. Evol. 19:908-917.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 908-917
-
-
-
46
-
-
0034097381
-
Codon-substitution models for heterogeneous selection pressure at amino acid sites
-
Yang, Z., R. Nielsen, N. Goldman, and A.-M. K. Pedersen. 2000. Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 155:431-449.
-
(2000)
Genetics
, vol.155
, pp. 431-449
-
-
Yang, Z.1
Nielsen, R.2
Goldman, N.3
Pedersen, A.-M.K.4
-
47
-
-
0032584099
-
Positive Darwinian selection after gene duplication in primate ribonuclease genes
-
Zhang, J., H. F. Rosenberg, and M. Nei. 1998. Positive Darwinian selection after gene duplication in primate ribonuclease genes. Proc. Natl. Acad. Sci. U. S. A. 95:3708-3713.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 3708-3713
-
-
Zhang, J.1
Rosenberg, H.F.2
Nei, M.3
|