메뉴 건너뛰기




Volumn 19, Issue 10, 2002, Pages 1752-1759

Duplication and adaptive evolution of the chalcone synthase genes of Dendranthema (Asteraceae)

Author keywords

Adaptive evolution; Chalcone synthase; Dendranthema; Duplication; Gene family

Indexed keywords

CHALCONE SYNTHASE;

EID: 0036790002     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a003997     Document Type: Article
Times cited : (52)

References (47)
  • 1
    • 0035061474 scopus 로고    scopus 로고
    • Positive and negative selection in the DAZ gene family
    • Bielawski, J. P., and Z. Yang. 2001. Positive and negative selection in the DAZ gene family. Mol. Biol. Evol. 18:523-529.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 523-529
    • Bielawski, J.P.1    Yang, Z.2
  • 3
    • 0028300359 scopus 로고
    • Modification of flower color in florist's chrysanthemum: Production of a white-flowering variety through molecular genetics
    • Courtney-Gutterson, N., C. Napoli, C. Lemieux, A. Morgan, E. Firoozabady, and K. E. Robison. 1994. Modification of flower color in florist's chrysanthemum: production of a white-flowering variety through molecular genetics. Biotechnology 12:268-271.
    • (1994) Biotechnology , vol.12 , pp. 268-271
    • Courtney-Gutterson, N.1    Napoli, C.2    Lemieux, C.3    Morgan, A.4    Firoozabady, E.5    Robison, K.E.6
  • 4
    • 0000354321 scopus 로고
    • The Compositae revisited
    • Cronquist, A. 1977. The Compositae revisited. Brittonia 29:137-153.
    • (1977) Brittonia , vol.29 , pp. 137-153
    • Cronquist, A.1
  • 5
    • 13044283060 scopus 로고    scopus 로고
    • Molecular genetics of ecological diversification: Duplication and rapid evolution of toxin genes of the venomous gastropod Conus
    • Duda, T. F. Jr., and S. R. Palumbi. 1999. Molecular genetics of ecological diversification: duplication and rapid evolution of toxin genes of the venomous gastropod Conus. Proc. Natl. Acad. Sci. U. S. A. 96:6820-6823.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 6820-6823
    • Duda T.F., Jr.1    Palumbi, S.R.2
  • 7
    • 0033976087 scopus 로고    scopus 로고
    • Molecular evolution of the chalcone synthase multigene family in the morning glory genome
    • Durbin, M. L., B. McCaig, and M. T. Clegg. 2000. Molecular evolution of the chalcone synthase multigene family in the morning glory genome. Plant Mol. Biol. 42:79-92.
    • (2000) Plant Mol. Biol. , vol.42 , pp. 79-92
    • Durbin, M.L.1    McCaig, B.2    Clegg, M.T.3
  • 8
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein, J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17:368-376.
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 9
    • 0032893932 scopus 로고    scopus 로고
    • Preservation of duplicate genes by complementary, degenerative mutations
    • Force, A., M. Lynch, F. B. Pickett, A. Amores, Y. L. Yan, and J. Postlethwait. 1999. Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151:1531-1545.
    • (1999) Genetics , vol.151 , pp. 1531-1545
    • Force, A.1    Lynch, M.2    Pickett, F.B.3    Amores, A.4    Yan, Y.L.5    Postlethwait, J.6
  • 10
    • 0022376704 scopus 로고
    • Dating the human-ape split by a molecular clock of mitochondrial DNA
    • Hasegawa, M., H. Kishino, and T. Yano. 1985. Dating the human-ape split by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22:160-174.
    • (1985) J. Mol. Evol. , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 11
    • 0029278107 scopus 로고
    • Chalcone synthase-like genes active during corolla development are differentially expressed and encode enzymes with different catalytic properties in Gerbera hybrida (Asteraceae)
    • Helariutta, Y., P. Elomma, M. Kotilainen, R. J. Griesbach, J. Schroder, and T. H. Teeri. 1995. Chalcone synthase-like genes active during corolla development are differentially expressed and encode enzymes with different catalytic properties in Gerbera hybrida (Asteraceae). Plant Mol. Biol. 28:47-60.
    • (1995) Plant Mol. Biol. , vol.28 , pp. 47-60
    • Helariutta, Y.1    Elomma, P.2    Kotilainen, M.3    Griesbach, R.J.4    Schroder, J.5    Teeri, T.H.6
  • 12
    • 0029810640 scopus 로고    scopus 로고
    • Duplication and functional divergence in the chalcone synthase gene family of Asteraceae: Evolution with substrate change and catalytic simplification
    • Helariutta, Y., M. Kotilainen, P. Elomaa, N. Kalkkinen, K. Bremer, T. H. Teeri, and V. A. Albert. 1996. Duplication and functional divergence in the chalcone synthase gene family of Asteraceae: evolution with substrate change and catalytic simplification. Proc. Natl. Acad. Sci. USA 93: 9033-9038.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 9033-9038
    • Helariutta, Y.1    Kotilainen, M.2    Elomaa, P.3    Kalkkinen, N.4    Bremer, K.5    Teeri, T.H.6    Albert, V.A.7
  • 13
    • 0030839487 scopus 로고    scopus 로고
    • Molecular evolution and functional relevance of the chalcone synthase genes of pea
    • Ito, M., Y. Ichinose, H. Kato, T. Shiraishi, and T. Yamada. 1997. Molecular evolution and functional relevance of the chalcone synthase genes of pea. Mol. Gen. Genet. 255:28-37.
    • (1997) Mol. Gen. Genet. , vol.255 , pp. 28-37
    • Ito, M.1    Ichinose, Y.2    Kato, H.3    Shiraishi, T.4    Yamada, T.5
  • 14
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • H. N. Munro, ed. Academic Press, New York
    • Jukes, T. H., and C. R. Cantor. 1969. Evolution of protein molecules. Pp. 21-123 in H. N. Munro, ed. Mammalian protein metabolism. Academic Press, New York.
    • (1969) Mammalian protein metabolism , pp. 21-123
    • Jukes, T.H.1    Cantor, C.R.2
  • 15
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 17
    • 0028155769 scopus 로고
    • The flavonoid biosynthetic pathway in plants: Function and evolution
    • Koes, R. E., F. Quattrocchio, and J. N. M. Mol. 1994. The flavonoid biosynthetic pathway in plants: function and evolution. BioEssays 16:123-132.
    • (1994) BioEssays , vol.16 , pp. 123-132
    • Koes, R.E.1    Quattrocchio, F.2    Mol, J.N.M.3
  • 18
    • 0024440265 scopus 로고
    • Cloning and molecular characterization of the chalcone synthase multigene family of Petunia hybrida
    • Koes, R. E., C. E. Spelt, P. J. Van Den Elzen, and J. N. M. Mol. 1989. Cloning and molecular characterization of the chalcone synthase multigene family of Petunia hybrida. Gene 81:245-257.
    • (1989) Gene , vol.81 , pp. 245-257
    • Koes, R.E.1    Spelt, C.E.2    Van Den Elzen, P.J.3    Mol, J.N.M.4
  • 20
    • 0003070062 scopus 로고
    • Accelerated evolution following gene duplication and its implications for the neutralist-selectionist controversy
    • T. Otha and K. Aoki, eds. Japan Scientific Press, Tokyo
    • Li, W.-H. 1985. Accelerated evolution following gene duplication and its implications for the neutralist-selectionist controversy. Pp. 333-352 in T. Otha and K. Aoki, eds. Population genetics and molecular evolution. Japan Scientific Press, Tokyo.
    • (1985) Population genetics and molecular evolution , pp. 333-352
    • Li, W.-H.1
  • 21
    • 0027403961 scopus 로고
    • Unbiased estimation of the rates of synonymous and nonsynonymous substitution
    • -. 1993. Unbiased estimation of the rates of synonymous and nonsynonymous substitution. J. Mol. Evol. 36:96-99.
    • (1993) J. Mol. Evol. , vol.36 , pp. 96-99
  • 22
    • 0003421005 scopus 로고    scopus 로고
    • Sinauer Associates, Inc., Sunderland, Mass
    • -. 1997. Molecular evolution. Sinauer Associates, Inc., Sunderland, Mass.
    • (1997) Molecular evolution
  • 23
    • 0026486403 scopus 로고
    • Relative-rate test for nucleotide substitutions between two lineages
    • Li, P., and J. Bousquet. 1992. Relative-rate test for nucleotide substitutions between two lineages. Mol. Biol. Evol. 9:1185-1189.
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 1185-1189
    • Li, P.1    Bousquet, J.2
  • 24
    • 0028024626 scopus 로고
    • A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates with application to the chloroplast genome
    • Muse, S. V., and B. S. Gaut. 1994. A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates with application to the chloroplast genome. Mol. Bio. Evol. 11:715-724.
    • (1994) Mol. Bio. Evol. , vol.11 , pp. 715-724
    • Muse, S.V.1    Gaut, B.S.2
  • 25
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • Nei, M., and T. Gojobori. 1986. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Bio. Evol. 3:418-426.
    • (1986) Mol. Bio. Evol. , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 26
    • 84986414519 scopus 로고
    • Nomenclature for incompletely specified bases in nucleic acid sequences. Recommendations
    • NC-IUB (Nomenclature Committee of the International Union of Biochemistry). 1985. Nomenclature for incompletely specified bases in nucleic acid sequences. Recommendations. Eur. J. Biochem. 150:1.
    • (1985) Eur. J. Biochem. , vol.150 , pp. 1
  • 28
    • 0027327059 scopus 로고
    • Pattern of nucleotide substitution in growth hormone-prolactin gene family: A paradigm for evolution by gene duplication
    • Ohta, T. 1993. Pattern of nucleotide substitution in growth hormone-prolactin gene family: a paradigm for evolution by gene duplication. Genetics 134:1271-1276.
    • (1993) Genetics , vol.134 , pp. 1271-1276
    • Ohta, T.1
  • 30
    • 0034129663 scopus 로고    scopus 로고
    • RRTree: Relative-rate tests between groups of sequences on a phylogenetic tree
    • Robinson-Rechavi, M., and D. Huchon. 2000. RRTree: relative-rate tests between groups of sequences on a phylogenetic tree. Bioinformatics 16:296-297.
    • (2000) Bioinformatics , vol.16 , pp. 296-297
    • Robinson-Rechavi, M.1    Huchon, D.2
  • 31
    • 0023505583 scopus 로고
    • Organization and differential activation of a gene family encoding the plant defense enzyme chalcone synthase in Phaseolus vulgaris
    • Ryder, T. B., S. A. Hedrick, J. N. Bell, X. Liang, S. D. Clouse, and C. J. Lamb. 1987. Organization and differential activation of a gene family encoding the plant defense enzyme chalcone synthase in Phaseolus vulgaris. Mol. Gen. Genet. 210:219-233.
    • (1987) Mol. Gen. Genet. , vol.210 , pp. 219-233
    • Ryder, T.B.1    Hedrick, S.A.2    Bell, J.N.3    Liang, X.4    Clouse, S.D.5    Lamb, C.J.6
  • 32
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 33
    • 0032953315 scopus 로고    scopus 로고
    • Molecular evolution of the COX7A gene family in primates
    • Schmidt, T. R., M. Goodman, and L. I. Grossman. 1999. Molecular evolution of the COX7A gene family in primates. Mol. Biol. Evol. 16:619-626.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 619-626
    • Schmidt, T.R.1    Goodman, M.2    Grossman, L.I.3
  • 35
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J. D., T J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 36
    • 0028913554 scopus 로고
    • Reaction mechanisms of homodimeric plant polyketide synthases (stilbene and chalcone synthase). A single active site for the condensing reaction is sufficient for synthesis of stilbenes, chalcones, and 6′-deoxychalcones
    • Tropf, S., B. Karcher, G. Schroder, and J. Schroder. 1995. Reaction mechanisms of homodimeric plant polyketide synthases (stilbene and chalcone synthase). A single active site for the condensing reaction is sufficient for synthesis of stilbenes, chalcones, and 6′-deoxychalcones. J. Biol. Chem. 270:7922-7928.
    • (1995) J. Biol. Chem. , vol.270 , pp. 7922-7928
    • Tropf, S.1    Karcher, B.2    Schroder, G.3    Schroder, J.4
  • 37
    • 0028321623 scopus 로고
    • Evidence that stibene synthases have developed from chalcone synthases several times in the course of evolution
    • Tropf, S., T Lanz, S. A. Rensing, J. Schroder, and G. Schroder. 1994. Evidence that stibene synthases have developed from chalcone synthases several times in the course of evolution. J. Mol. Evol. 38:610-618.
    • (1994) J. Mol. Evol. , vol.38 , pp. 610-618
    • Tropf, S.1    Lanz, T.2    Rensing, S.A.3    Schroder, J.4    Schroder, G.5
  • 38
    • 0034483261 scopus 로고    scopus 로고
    • Molecular evolution of the exon 2 of CHS genes and the possibility of its application to plant phylogenetic analysis
    • Wang, J., L. Qu, J. Chen, H. Gu, and Z. Chen. 2000. Molecular evolution of the exon 2 of CHS genes and the possibility of its application to plant phylogenetic analysis. Chinese Sci. Bull. 45:1735-1742.
    • (2000) Chinese Sci. Bull. , vol.45 , pp. 1735-1742
    • Wang, J.1    Qu, L.2    Chen, J.3    Gu, H.4    Chen, Z.5
  • 39
    • 0024711702 scopus 로고
    • Differential regulation of soybean chalcone synthase genes in plant defence, symbiosis and upon environmental stimuli
    • Wingender, R., H. Rohrig, C. Horicke, D. Wing, and J. Schell. 1989. Differential regulation of soybean chalcone synthase genes in plant defence, symbiosis and upon environmental stimuli. Mol. Gen. Genet. 218:315-322.
    • (1989) Mol. Gen. Genet. , vol.218 , pp. 315-322
    • Wingender, R.1    Rohrig, H.2    Horicke, C.3    Wing, D.4    Schell, J.5
  • 41
    • 0028064845 scopus 로고
    • Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
    • Yang, Z. 1994. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J. Mol. Evol. 39:306-314.
    • (1994) J. Mol. Evol. , vol.39 , pp. 306-314
    • Yang, Z.1
  • 42
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • -. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13:555-556 [http://abacus.gene.ucl.ac.uk/software/paml.html].
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 555-556
  • 43
    • 0031897964 scopus 로고    scopus 로고
    • Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution
    • -. 1998. Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution. Mol. Biol. Evol. 15:568-573.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 568-573
  • 44
    • 0031960185 scopus 로고    scopus 로고
    • Synonymous and nonsynonymous rate variation in nuclear genes of mammals
    • Yang, Z., and R. Nielsen. 1998. Synonymous and nonsynonymous rate variation in nuclear genes of mammals. J. Mol. Evol. 46:409-418.
    • (1998) J. Mol. Evol. , vol.46 , pp. 409-418
    • Yang, Z.1    Nielsen, R.2
  • 45
    • 0036270185 scopus 로고    scopus 로고
    • Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages
    • -. 2002. Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages. Mol. Biol. Evol. 19:908-917.
    • (2002) Mol. Biol. Evol. , vol.19 , pp. 908-917
  • 46
    • 0034097381 scopus 로고    scopus 로고
    • Codon-substitution models for heterogeneous selection pressure at amino acid sites
    • Yang, Z., R. Nielsen, N. Goldman, and A.-M. K. Pedersen. 2000. Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 155:431-449.
    • (2000) Genetics , vol.155 , pp. 431-449
    • Yang, Z.1    Nielsen, R.2    Goldman, N.3    Pedersen, A.-M.K.4
  • 47
    • 0032584099 scopus 로고    scopus 로고
    • Positive Darwinian selection after gene duplication in primate ribonuclease genes
    • Zhang, J., H. F. Rosenberg, and M. Nei. 1998. Positive Darwinian selection after gene duplication in primate ribonuclease genes. Proc. Natl. Acad. Sci. U. S. A. 95:3708-3713.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 3708-3713
    • Zhang, J.1    Rosenberg, H.F.2    Nei, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.