Rapid selection of differentially expressed genes in TNFα-activated endothelial cells

Molecular Medicine

Volumn 8, Issue 9, 2002, Pages 559-567

  Nagasaka, Takaharu ^b   Boulday, Gwénola ^a   Fraser, Christopher C ^c   Coupel, Stéphanie ^a   Coulon, Flora ^a   Tesson, Laurent ^a   Heslan, Jean Marie ^a   Soulillou, Jean Paul ^a   Charreau, Béatrice ^a,d  

^a Inst Transplant/Rech Transplant   (France)

^b NAGOYA UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^c MILLENNIUM PHARMACEUTICALS INC   (United States)

^d HÔTEL DIEU   (France)

Author keywords

[No Author keywords available]

Indexed keywords

BETA ACTIN; DNA FRAGMENT; PROTEIN; PROTEIN BAX; PROTEIN BCL 2; PROTEIN NOXA; PROTEIN PUMA; TUMOR NECROSIS FACTOR ALPHA; UNCLASSIFIED DRUG;

ANIMAL CELL; ANIMAL TISSUE; ARTICLE; AUTORADIOGRAPHY; BIOINFORMATICS; CELL DIFFERENTIATION; CONTROLLED STUDY; DIFFERENTIAL DISPLAY; DNA LIBRARY; DNA PROBE; DNA SEQUENCE; DNA TEMPLATE; ENDOTHELIUM CELL; EXPRESSED SEQUENCE TAG; GENE CONTROL; GENE EXPRESSION; GENETIC IDENTIFICATION; HOUSEKEEPING GENE; HYBRIDIZATION; NONHUMAN; NORTHERN BLOTTING; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN INTERACTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA ANALYSIS; RNA DIFFERENTIAL DISPLAY; SIGNAL NOISE RATIO; SWINE;

EID: 0036765414     PISSN: 10761551     EISSN: None     Source Type: Journal    
DOI: 10.1007/bf03402166     Document Type: Article

References (32)

1. Welsh J, McClelland M. (1990) Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res. 18 (24): 7213-7218.
2. Liang P, Averboukh L, Keyomarsi K, et. al. (1992) Differential display and cloning of messenger RNAs from human breast cancer versus mammary epithelial cells. Cancer Res. 52 (24): 6966-6968.
3. Liang P, Pardee AB. (1992) Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction. Science 257 (5072): 967-971.
4. Wan JS, Sharp SJ, Poirier GM, et al. (1996) Cloning differentially expressed mRNAs. Nat. Biotechnol. 14 (13): 1685-1691.
5. Haraldsen G, Kvale D, Lien B, et al. (1996) Cytokine-regulated expression of E-selectin, intercellular adhesion molecule-1 (ICAM-1), and vascular cell adhesion molecule-1 (VCAM-1) in human microvascular endothelial cells. J. Immunol. 156 (7): 2558-2565.
6. Xia P, Gamble JR, Rye KA, et al. (1998) Tumor necrosis factor-alpha induces adhesion molecule expression through the sphingosine kinase pathway. Proc. Natl. Acad. Sci. USA 95: 14196-14201.
7. Kalogeris TJ, Laroux FS, Cockrell A, et al. (1999) Effect of selective proteasome inhibitors on TNF-induced activation of primary and transformed endothelial cells. Am. J. Physiol. 276: C856-C864.
8. Batten P, Yacoub MH, Rose ML. (1996) Effect of human cytokines (IFN-gamma, TNF-alpha, IL-1 beta, IL-4) on porcine endothelial cells: induction of MHC and adhesion molecules and functional significance of these changes. Immunology 87 (1): 127-133.
9. Charreau B, Coupel S, Goret F, et al. (2000) Association of glucocorticoids and cyclosporin A or rapamycin prevents E-selectin and IL-8 expression during LPS- and TNFalpha-mediated endothelial cell activation. Transplantation 69 (5): 945-953.
10. Boulday G, Coulon F, de Martin R, et al. (2000) Identification and characterization of novel porcine molecules specifically regulated on endothelial cells by human complement activation. Transplant Proc. 32 (5): 977-978.
11. Horrevoets AJ, Fontjin RD, van Zonnefeld AJ, et al. (1999) Vascular endothelial genes that are responsive to tumor necrosis factor-alpha in vitro are expressed in atherosclerotic lesions, including inhibitor of apoptosis ptotein-1, stannin, and two novel genes. Blood 93: 3418-3431.
12. Miele G, MacRae L, McBride D, et al. (1998) Elimination of false positives generated through PCR re-amplification of differential display cDNA. Biotechniques 25: 138-144.
13. Frost MR, Guggenheim JA. (1999) Mammalian polyadenylation sites: implications for differential display. Nucleic Acids Res. 27: 1386-1391.
14. Liang P, Zhu W, Zhang X, et al. (1994) Differential display using one-base anchored oligo-dT primers. Nucleic Acids Res. 22 (25): 5763-5764.
15. Sambrook J, Fritsch EF, Maniatis T. (1989) Molecular Cloning: A Laboratory Manual 2nd Edn. Cold Spring Harbor, NY.
16. Altschul SF, Gish W, Miller W, et al. (1990) Basic local alignment search tool. J. Mol. Biol. 215 (3): 403-410.
17. Gish W, States DJ. (1993) Identification of protein coding regions by database similarity search. Nat. Genet. 3 (3): 266-272.
18. Liang P, Pardee AB. (1997) Differential display methods and protocols. Methods in Molecular Biology Totowa, NJ: Humana Press 85.
19. Poirier GM, Pyati J, Wan JS, Erlander MG. (1997) Screening differentially expressed cDNA clones obtained by differential display using amplified RNA. Nucleic Acids Res. 25: 913-914.
20. Watier H, Vallee I, Thibault G, et al. (1994) Effect of human inflammatory cytokines on porcine endothelial cell MHC molecule expression: unique role for TNF-alpha in MHC class-II induction. Transplant Proc. 26 (3): 1152-1155.
21. Brauner-Osborne H, Krogsgaard-Larsen P. (2000) Sequence and expression pattern of a novel human orphan G-protein-coupled receptor, GPRC5B, a family C receptor with a short amino-terminal domain. Genomics 65: 121-128.
22. Hijkata M, Kato N, Sato T, et al. (1990) Molecular cloning and characterization of a cDNA for a novel phorbol-12-myristate-13-acetate-responsive gene that is highly expressed in an adult T-cell leukemia cell line. J. Virol. 64: 4632-4639.
23. Oda E, Ohki R, Murasawa H, et al. (2000) Noxa, a BH3-only member of the Bcl2 family and candidate mediator of p53-induced apoptosis. Science 288: 1053-1058.
24. Zhang X, Wang C, Schook LB, et al. (2000) An RNA helicase, RHIV-1, induced by porcine reproductive and respiratory syndrome virus (PRRSV) is mapped on porcine chromosome 10q13. Microb. Pathog. 28: 267-278.
25. Leslie RA, Robertson HA. (2000) Differential Display. NY: Oxford University Press.
26. McClelland M, Mathieu-Daude F, Weslh J. (1995) RNA fingerprinting and differential display using arbitrarily primed PCR. Trends Genet. 11: 242-246.
27. Welsh J, Chada K, Dalal SS, et al. (1992) Arbitrarily primed PCR fingerprinting of RNA. Nucleic Acids Res. 20: 4965-4970.
28. Liang P, Averbroukh L, Pardee AB. (1993) Distribution and cloning of eukariotic mRNAs by means of differential display: refinement and optimization. Nucleic Acids Res. 21: 3269-3275.
29. Rajeevan MS, Ranamukhaarachchi DG, Vernon SD, Unger ER. (2001) Use of real-time quantitative PCR to validate the results of cDNA array and differential display PCR technologies. Methods 25 (4): 443-451.
30. Schopfer CR, Ebel J. (1998) Identification of elicitor-induced cytochrome P450s of soybean (Glycine max L.) using differential display of mRNA. Mol. Gen. Genet. 258 (4): 315-322.
31. Charreau B, Coupel S, Boulday G, Soulillou JP. (2000) Cyclosporine inhibits class II major histocompatibility antigen presentation by xenogeneic endothelial cells to human T lymphocytes by altering expression of the class II transcriptional activator gene. Transplantation 70 (2): 354-361.
32. Wu X, Deng Y. (2002) Bax and BH3-domain-only proteins in p53-mediated apoptosis. Front Biosci 7: d151-d156.