The CRK1 receptor-like kinase gene of tobacco is negatively regulated by cytokinin

Plant Molecular Biology

Volumn 50, Issue 2, 2002, Pages 155-165

  Schäfer, Silke ^a   Schmülling, Thomas ^a,b  

^a UNIVERSITY OF TÜBINGEN   (Germany)

^b FREIE UNIVERSITÄT BERLIN   (Germany)

Author keywords

Cytokinin; Gene regulation; Hormone signalling; Nicotiana tabacum; Receptor kinase

Indexed keywords

CELL CULTURE; CYTOLOGY; DESALINATION; GENETIC ENGINEERING; HORMONES; MUTAGENS; ORGANIC ACIDS; PROTEINS; VAPORIZATION;

ABSCISIC ACID; PUTATIVE RECEPTOR;

PLANTS (BOTANY);

EMBRYOPHYTA; NICOTIANA; NICOTIANA TABACUM; ZEA; ZEA MAYS;

COMPLEMENTARY DNA; CYTOKININ; PHYTOHORMONE; PLANT RNA; PROTEIN KINASE;

ARTICLE; CHEMISTRY; DNA SEQUENCE; DOSE RESPONSE; DRUG EFFECT; ENZYMOLOGY; GENE EXPRESSION REGULATION; GENETIC TRANSCRIPTION; GENETICS; METABOLISM; MOLECULAR CLONING; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; TOBACCO;

BASE SEQUENCE; CLONING, MOLECULAR; CYTOKININS; DNA, COMPLEMENTARY; DOSE-RESPONSE RELATIONSHIP, DRUG; GENE EXPRESSION REGULATION, ENZYMOLOGIC; GENE EXPRESSION REGULATION, PLANT; MOLECULAR SEQUENCE DATA; PLANT GROWTH REGULATORS; PROTEIN KINASES; RNA, PLANT; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; TOBACCO; TRANSCRIPTION, GENETIC;

EID: 0036718810     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1016087908746     Document Type: Article

References (76)

1. Altschul, S.F., Gish, W., Miller, W., Myers, E. and Lipman, D.J. 1990. Basic local alignment search tool. J. Mol. Biol. 215: 403-410.
2. Bairoch, A. and Bucher, P. 1994. PROSITE: recent developments. Nucl. Acids Res. 22: 3583-3589.
3. Becraft, P.W. 1998. Receptor kinases in plant development. Trends Plant Sci. 3: 384-388.
4. Becraft, P.W., Stinard, P.S. and McCarty, D.R. 1996. CRINKLY4: a TNFR-like receptor kinase involved in maize epidermal differentiation. Science 273: 1406-1409.
5. Bleecker, A.B., Esch, J.J., Hall, A.E., Rodriguez, F.I. and Binder, B.M. 1998. The ethylene-receptor family from Arabidopsis: structure and function. Phil. Trans. R. Soc. Lond. Ser. B. 353: 1405-1412.
6. Brandstatter, I. and Kieber, J.J. 1998. Two genes with similarity to bacterial response regulators are rapidly and specifically induced by cytokinin in Arabidopsis. Plant Cell 10: 1009-1019.
7. Brault, M., Maldiney, R. and Miginiac, E. 1997. Cytokinin-binding proteins. Physiol. Plant. 100: 520-527.
8. Busk, P.K., Pujal, J., Jessop, A., Lumbreras, V. and Pagès, M. 1999. Constitutive protein-DNA interactions on the abscisic acid-responsive element before and after developmental activation of the rab28 gene. Plant Mol. Biol. 41: 529-536.
9. Crowell, D.N. 1994. Cytokinin regulation of a soybean pollen allergen gene. Plant Mol. Biol. 25: 829-835.
10. Cserzo, M., Wallin, E., Simon, I., von Heijne, G. and Elofsson, A. 1997. Prediction of transmembrane α-helices in prokaryotic membrane proteins: the Dense Alignment Surface method. Protein Eng. 10: 673-676.
11. D'Agostino, I.B. and Kieber, J.J. 1999a. Molecular mechanisms of cytokinin action. Curr. Opin. Plant Biol. 2: 359-364.
12. D'Agostino I.B. and Kieber, J.J. 1999b. Phosphorelay signal transduction: the emerging family of plant response regulators. Trends Biochem. Sci. 24, 452-456.
13. D'Agostino, I.B., Deruere, J. and Kieber, J.J. 2000. Characterization of the response of the Arabidopsis response regulator gene family to cytokinin. Plant Physiol. 124: 1706-1717.
14. Du, X., Fox, J.E. and Pei, S. 1996. Identification of a binding sequence for the 14-3-3 protein within the cytoplasmic domain of the adhesion receptor, platelet glycoprotein Ib α. J. Biol. Chem. 271: 7362-7367.
15. Deikman, J. and Hammer, P.E. 1995. Induction of anthocyanin accumulation by cytokinins in Arabidopsis thaliana. Plant Physiol. 108: 47-57.
16. De Loose, M., Alliotte, T., Gheysen, G., Genetello, C., Gielen, J., Soetaert, P., Van Montagu, M. and Inzé, D. 1988. Primary structure of a hormonally regulated β-glucanase of Nicotiana plumbaginifolia. Gene 70: 13-23.
17. Dominov, J.A., Stenzler, L., Lee, S., Schwarz, J.J., Leisner, S. and Howell, S.H. 1992. Cytokinins and auxins control the expression of a gene in Nicotiana plumbaginifolia cells by feedback regulation. Plant Cell 4: 451-461.
18. Faiss, M., Zalubílova, J., Strnad, M. and Schmülling, T. 1997. Conditional transgenic expression of the ipt gene indicates a function for cytokinins in paracrine signaling in whole tobacco plants. Plant J. 12: 401-415.
19. Faust, J.R. and Dice, J.F. 1991. Evidence for isopentenyladenine modification on a cell cycle-regulated protein. J. Biol. Chem. 266: 9961-9970.
20. Flores, S. and Tobin, E.M. 1988. Cytokinin modulation of LHCP mRNA levels: the involvement of post-transcriptional regulation. Plant Mol. Biol. 11: 409-415.
21. Glab, N., Labidi, B., Qin, L.-X., Trehin, C., Bergounioux, C. and Meijer, L. 1994. Olomoucine, an inhibitor of the cdc2/cdk2 kinases activity, blocks plant cells at the G1 to S and G2 to M cell cycle transitions. FEBS Lett. 353: 207-211.
22. Hanks, S.K. and Quinn, A.M. 1991. Protein kinase catalytic domain sequence database: identification of conserved features of primary structure and classification of family members. Meth. Enzymol. 200: 38-62.
23. Hanks, S.K., Quinn, A.M. and Hunter, T. 1988. The protein kinase family: conserved features and deduced phylogeny of the catalytic domains. Science 241: 42-52.
24. Hardie, D.G. 1989. Effects of the tumor promoter ocadaic acid on intracellular protein phosphorylation and metabolism. Nature 337: 78-81.
25. Hare, P.D. and van Staden, J. 1997. The molecular basis of cytokinin action. Plant Growth Regul. 23: 41-78.
26. Havlíček, L., Hanuš, J., Veselý, J., Leclerc, S., Meijer, L., Shaw, G. and Strnad, M. 1997. Cytokinin-derived cyclin-dependent kinase inhibitors: synthesis and cdc2 inhibitory activity of olomoucine and related compounds. J. Med. Chem. 40: 408-412.
27. Haystead, T.A.J., Sim, A.T.R., Carling, D., Honnor, R.C., Tsukitani, Y., Cohen, P. and Hardie, D.G. 1989. Effects of the tumor promoter ocadaic acid on intracellular protein phosphorylation and metabolism. Nature 337: 78-81.
28. Hofmann, K. and Stoffel, W. 1993. TMbase - a database of membrane spanning proteins segments. Biol. Chem. Hoppe-Seyler 347: 166.
29. Hubank, M. and Schatz, D.G. 1994. Identifying differences in mRNA expression by representational difference analysis of cDNA. Nucl. Acids. Res. 22: 5640-5648.
30. Ikeda, Y., Koizumi, N., Kusano, T. and Sano, H. 1999. Sucrose and cytokinin modulation of WPK4, a gene encoding a SNF1-related protein kinase from wheat. Plant Physiol. 121: 813-820.
31. Imamura, A., Hanaki, N., Umeda, H., Nakamura, A., Suzuki, T., Ueguchi, C. and Mizuno, T. 1998. Response regulators implicated in His-to-Asp phosphotransfer signalling in Arabidopsis. Proc. Natl. Acad. Sci. USA 95: 2691-2696.
32. Inoue, T., Higushi, M., Hashimoto, Y., Seki, M., Kobayashi, M., Kato, T., Tabata, S., Shinozaki, K. and Kakimoto, T. 2001. Identification of CRE1 as a cytokinin receptor from Arabidopsis. Nature 409: 1060-1063.
33. Kakimoto, T. 1996. CKI1, a histidine kinase homolog implicated in cytokinin signal trans-duction. Science 274: 982-985.
34. Kanyuka, K., Couch, D. and Hooley, R. 2001. A higher plant seven-transmembrane receptor that influences sensitivity to cytokinins. Curr. Biol. 11: 535.
35. Klebe, C., Prinz, H., Wittinghofer, A. and Goody, R.S. 1995. The kinetic mechanism of Ran-nucleotide exchange catalysed by RCC1. Biochemistry 34: 12543-12552.
36. Klein, P., Kanehisa, M. and DeLisi, C. 1985. The detection and classification of membrane-spanning proteins. Biochim. Biophys. Acta 815: 468-476.
37. Lehmann, A., Black, R. and Ecker, J. 1996. Hookless1, an ethylene response gene, is required for differential cell elongation in the Arabidopsis hypocothyl. Cell 85: 183-194.
38. Li, Z. and Wurtzel, E.T. 1998. The ltk gene family encodes novel receptor-like kinases with temporal expression in developing maize endosperm. Plant Mol. Biol. 37: 749-761.
39. Lu, J.L., Ertl, J.R. and Chen, C. 1992. Transcriptional regulation of nitrate reductase mRNA levels by cytokinin-abscisic acid interactions in etiolated barley leaves. Plant Physiol. 98: 1255-1260.
40. Mähonen, A.P., Bonnke, M., Kauppinen, L., Riikonen, M.. Benfey, P.N. and Helariutta, Y. 2000. A novel two-component hybrid molecule regulates vascular morphogenesis of the Arabidopsis root. Genes Dev. 14: 2938-2943.
41. McCarty, D.R. and Chory, J. 2000. Conservation and innovation in plant signalling pathways. Cell 103: 201-209.
42. McGeoch, D.J. 1985. On the predictive recognition of signal peptide sequences. Virus Res. 3: 271-286.
43. Mok, M.C. 1994. Cytokinins and plant development: an overview. In: D.W.S. Mok and M.C. Mok (Eds.) Cytokinins: Chemistry, Activity and Function, CRC Press, Boca Raton, FL, pp. 155-166.
44. Murashige, T. and Skoog, F. 1962. A revised medium for plant growth and bioassays with tobacco tissue culture. Plant Physiol. 15: 473-497.
45. Murray, M.G. and Thompson, W.F. 1980. Rapid isolation of high molecular weight plant DNA. Nucl. Acids Res 8: 4321-4325.
46. Nakai, K. and Kanehisa, M. 1991. Expert system for predicting protein localization sites in gram-negative bacteria. Proteins Struct. Funct. Genet. 11: 95-110.
47. Nielsen, H., Engelbrecht, J., Brunak, S. and von Heijne, G. 1997. Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Eng. 10: 1-6.
48. Puissant, C. and Houdebine, L.-M. 1990. An improvement of the single-step method of the RNA isolation by acid guanidinium thiocyanate-phenol- chloroform extraction. BioTechniques 8: 148-149.
49. Ren, R., Mayer, B.J., Cicchetti, P. and Baltimore, D. 1993. Identification of a ten-amino acid proline-rich SH3 binding site. Science 259: 1157-1161.
50. Renault, L. Nassar, N., Vetter, I., Becker, J., Klebe, C., Roth, M. and Wittinghofer, A. 1998. The 1.7 Å crystal structure of the regulator of chromosome condensation (RCC1) reveals a seven-bladed propeller. Nature 392: 97-101.
51. Rost, B. 1996. PHD: predicting one-dimensional protein structure by profile based neural networks. Meth. Enzymol. 266: 525-539.
52. Rost, B., Casadio, R., Fariselli, P. and Sander. C. 1995. Prediction of helical transmembrane segments at 95% accuracy. Protein Sci. 4: 521-533.
53. Rost, B., Fariselli, P. and Casadio, R. 1996. Topology prediction for helical transmembrane segments at 85% accuracy. Protein Sci. 7: 1704-1718.
54. Rupp, H., Frank, M., Werner, T., Strnad, M. and Schmülling, T. 1999. Increased steady state mRNA levels of the STM and KNAT1 homeobox genes in cytokinin overproducing Arabidopsis thaliana indicate a role for cytokinins in the shoot apical meristem. Plant J. 18: 357-363.
55. Ryals, J., Weymann, K., Lawton, K., Friedrich, L., Ellis, D., Steiner, H.Y., Johnson, J., Delaney, T.P., Jesse, T., Vos, P. and Uknes, S. 1997. The Arabidopsis NIM1 protein shows homology to the mammalian transcription factor inhibitor IκB. Plant Cell 9: 504-509.
56. Sakakibara, H., Suzuki, M., Takei, K., Deji, A., Taniguchi, M. and Sugiyama, T. 1998. A response-regulator homologue possibly involved in nitrogen signal transduction mediated by cytokinin in maize. Plant J. 14: 337-344.
57. Sambrook, J., Fritsch, E. and Maniatis, T. 1989. Molecular Cloning: A Laboratory Manual, 2nd ed. Cold Spring Harbor Laboratory Press, Plainview, NY.
58. Sano, H. and Youssefian, S. 1994. Light and nutritional regulation of transcripts encoding a wheat protein kinase homolog is mediated by cytokinins. Proc. Natl. Acad. Sci. USA 91: 2582-2586.
59. Schäfer, S., Krolzik, S., Romanov, G. and Schmülling, T. 2000. Cytokinin-regulated transcripts in tobacco cell culture. Plant Growth Regul. 32: 307-313.
60. Schmülling, T. 2001. CREam of cytokinin signalling: receptor identified. Trends Plant Sci. 6: 281-284.
61. Schmülling, T., Schäfer, S. and Romanov, G. 1997. Cytokinins as regulators of gene expression. Physiol. Plant. 100: 505-519.
62. Schmülling, T., Rupp, H.M., Frank, M. and Schäfer, S. 1999. Recent advances in cytokinin research: receptor candidates, primary response genes, mutants and transgenic plants. In: M. Strnad, P. Pec and E. Beck (Eds.) Advances in Regulation of Plant Growth and Development, Peres Publishers, Prague, pp. 85-96.
63. Schulze-Gahmen, U., Brandsen, J., Jones, D.H., Morgan, D.O., Meijer, L., Vesely, J. and Kim, S.-H. 1995. Multiple modes of ligand recognition: crystal structures of cyclin-dependent protein kinase 2 in complex with ATP and two inhibitors, olomoucine and isopentenyladenine. Proteins 22: 378-391.
64. Silver, D.L., Pinaev, A., Chen, R. and de Bruijn, F.J. 1996. Postranscriptional regulation of the Sesbania rostrata early nodulin gene SrEnod2 by cytokinin. Plant Physiol. 112: 559-567.
65. Soni, R., Carmichael, J.P., Shah, Z.H. and Murray, J.A.H. 1995. A family of cyclin D homologs from plants differentially controlled by growth regulators and containing the conserved retinoblastoma protein interaction motif. Plant Cell 7: 85-103.
66. 6-(o-hydroxybenzylamino) purine as naturally occurring cytokinin in Populus x canadensis cv. Robusta leaves. Plant Physiol. 99: 74-80.
67. Suzuki, T., Miwa, K., Ishikawa, K., Yamada, H., Aiba, H. and Mizuno, T. 2001. The Arabidopsis sensor His-kinase, AHK4, can respond to cytokinins. Plant Cell Physiol. 42: 107-113.
68. Taniguchi, M., Kiba, T., Sakakibara, H., Ueguchi, C., Mizuno, T. and Sugiyama, T. 1998. Expression of Arabidopsis response regulator homologs is induced by cytokinins and nitrate. FEBS Lett. 429: 259-262.
69. Teramoto, H., Momotani, E., Takeba, G. and Tsuji, H. 1994. Isolation of a cDNA clone for a cytokinin-repressed gene in excised cucumber cotyledons. Planta 193: 573-579.
70. Veselý, J., Havlíček, L., Strnad, M., Blow, J.J., Donella-Deana, A., Pinna, L., Letham, D.S., Kato, J., Detivaud, L., Leclerc, S. and Meijer, L. 1994. Inhibition of cyclin-dependent kinases by purine analogues. Eur. J. Biochem. 224: 771-786.
71. Vögeli-Lange, R., Fründt, C., Hart, C.M., Nagy, F. and Meins, F. Jr. 1994. Developmental, hormonal and pathogenesis-related regulation of the tobacco class I β-1,3-glucanase B promoter. Plant Mol. Biol. 25: 299-311.
72. Westneat, D.F., Noon, W.A., Reeve, H.K. and Aquadro, C.F. 1988. Improved hybridization conditions for DNA 'fingerprints' probed with M13. Nucl. Acids. Res. 16: 4161.
73. Wilkinson, J.Q., Lanaham, M.B., Yen, H.C., Giovannoni, J.J. and Klee, H.J. 1995. An ethylene-inducible component of signal transduction encoded by never-ripe. Science 270: 1807-1809.
74. Williams, M.P. 1994. The structure and function of proline-rich regions in proteins. Biochem. J. 297: 249-260.
75. Yamada, H., Suzuki, T., Terada, K., Takei, K., Ishikawa, K., Miwa, K. and Mizuno, T. 2001. The Arabidopsis AHK4 histidine kinase is a cytokinin-binding receptor that transduces cytokinin signals across the membrane. Plant Cell Physiol., in press.
76. Yamamoto, Y.Y., Matsui, M., Ang, L.H. and Deng, X.-W. 1998. Role of COP1 interacting protein in mediating light-regulated gene expression in Arabidopsis. Plant Cell 19: 1083-1094.