Structural features of prions explored by sequence analysis I. Sequence data

Cellular and Molecular Life Sciences

Volumn 59, Issue 8, 2002, Pages 1366-1376

  Mornon, J P ^a   Prat, K ^a   Dupuis, F ^a   Callebaut, I ^a  

^a SORBONNE UNIVERSITÉ   (France)

Author keywords

Foamy virus; Fusion peptide; HCA; Interferon inducible membrane protein; Prion; TATA box binding protein

Indexed keywords

INTERFERON INDUCIBLE MEMBRANE PROTEIN; MEMBRANE PROTEIN; PRION PROTEIN; TATA BINDING PROTEIN; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; HUMAN; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRION; PROTEIN BINDING; PROTEIN SECONDARY STRUCTURE; PROTEIN STRUCTURE; SPUMA VIRUS; TATA BOX; VIRUS ENVELOPE;

AMINO ACID SEQUENCE; ANIMALS; DNA-BINDING PROTEINS; HUMANS; INTERFERONS; MEMBRANE PROTEINS; MOLECULAR SEQUENCE DATA; PRIONS; PROTEIN STRUCTURE, TERTIARY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, PROTEIN; SPUMAVIRUS; TATA-BOX BINDING PROTEIN; TRANSCRIPTION FACTORS;

ANIMALIA; FOAMY RETROVIRUS; HUMAN SPUMARETROVIRUS; SPUMAVIRUS;

EID: 0036694033     PISSN: 1420682X     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00018-002-8514-7     Document Type: Article

References (54)

1. Prions
2. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
3. Prion protein structural features indicate possible relations to signal peptidases
4. Conversion of alpha-helices into beta-sheets features in the formation of the scrapie prion proteins
5. Scrapie prions: A three-dimensional model of an infectious fragment
6. Structural studies of the scrapie prion protein by electron crystallography
7. NMR structure of the mouse prion protein domain PrP(121-321)
8. NMR characterization of the full-length recombinant murine prion protein, mPrP(23-231)
9. NMR solution structure of the human prion protein
10. Crystal structure of the human prion protein reveals a mechanism for oligomerization
11. Two different neurodegenerative diseases caused by proteins with similar structures
12. Structure of the globular region of the prion protein Ure2 from the yeast Saccharomyces cerevisiae
13. Common prevalence of alanine and glycine in mobile reactive centre loops of serpins and viral fusion peptides: Do prions possess a fusion peptide?
14. Structural plasticity of the feline leukaemia virus fusion peptide: A circular dichroism study
15. Protein-induced fusion can be modulated by target membrane lipids through a structural switch at the level of the fusion peptide
16. The amino-terminal region of the fusion peptide of influenza
17. Membrane structure and fusion-triggering conformational change of the fusion domain form influenza hemagglutinin
18. Serpins and other covalent protease inhibitors
19. An atlas of serpin conformations
20. Structure of staphylococcal alpha-hemolysin, a heptameric transmembrane pore
21. Crystal structure of staphylococcal LukF delineates conformational changes accompanying formation of a transmembrane channel
22. Conformational polymorphism of the amyloidogenic and neurotoxic peptide homologous to the residues 106-126 of the prion peptide
23. Helix-coil transition of Pr106-126: Molecular dynamic study
24. Neurotoxicity of a prion protein fragment
25. Structure of the haemagglutinin membrane glycoprotein of influenza virus at 3 Å resolution
26. Structure of influenza haemagglutinin at the pH of membrane fusion
27. Deciphering protein sequence information through hydrophobic cluster analysis (HCA): Current status and perspectives
28. Improved tools for biological sequence comparison
29. Hydrophobic cluster analysis: An efficient new way to compare and analyse amino acid sequences
30. Detection of secondary structure elements in proteins by hydrophobic cluster analysis
31. The PROSITE database, its status in 1999
32. The protein data bank
33. SWISS-MODEL and the Swiss-Pdb Viewer: An environment for comparative protein modeling
34. Swiss-PDB Viewer (Deep View)
35. Molecular cloning and characterization of MPL, the human homolog of the v-mpl oncogene: Identification of a member of the hematopoietic growth factor receptor superfamily
36. Viral exploitation and subversion of the immune system through chemokine mimicry
37. Why aren't foamy viruses pathogenic?
38. Foamy viruses are unconventional retroviruses
39. The prion protein has DNA strand transfer properties similar to retroviral nucleocapsid protein
40. The prion protein has RNA binding and chaperoning properties characteristic of nucleocapsid protein NCP7 of HIV-1
41. Viral fusion peptides and identification of membrane-interacting segments
42. An endogenous retrovirus and exogenous scrapie in a mouse model of aging
43. Structure of an HIV gp120 envelope glycoprotein in complex with the CD4 receptor and a neutralizing human antibody
44. Evidence for the role of PrP(C) helix 1 in the hydrophilic seeding of prion aggregates
45. Expression cloning of an interferon-inducible 17-kDa membrane protein implicated in the control of cell growth
46. Cellular prion protein: On the road for functions
47. Mammalian prion proteins: Enigma, variation and vaccination
48. C directly interacts with proteins involved in signaling pathways
49. Structural mobility of the human prion protein probed by backbone hydrogen exchange
50. Estimating the total number of protein folds
51. A re-estimation for the total numbers of protein folds and superfamilies
52. Estimating the number of protein folds
53. SCOP database in 2002: Refinements accommodate structural genomics
54. Crystal structure of a human TATA box-binding protein/TATA element complex