Stokes-flow computation of the diffusion coefficient and rotational diffusion tensor of lysozyme, a globular protein

Physics of Fluids

Volumn 14, Issue 7, 2002, Pages 2376-2387

  Zhao, Hong ^a   Pearlstein, Arne J ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

APPROXIMATION THEORY; BOUNDARY ELEMENT METHOD; CRYSTAL STRUCTURE; CRYSTALLOGRAPHY; DIFFUSION; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY;

ROTATIONAL DIFFUSION TENSOR;

ENZYMES;

PROTEIN;

EID: 0036645846     PISSN: 10706631     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.1481875     Document Type: Article

References (84)

1. Subunit structure and physical properties of the hemocyanin of the giant isopod Bathynomus giganteus
2. Extraction of thermodynamic data from ternary diffusion coefficients. Use of precision diffusion measurements for lysozyme chloride-NaCl at 25 °C to determined the change of lysozyme chloride chemical potential with increasing NaCl concentration well into the supersaturated region
3. Precision measurements of ternary diffusion coefficients and implications for protein crystal growth. Lysozyme chloride in aqueous ammonium chloride at 25 °C
4. Huntingtin aggregation monitored by dynamic light scattering
5. Transport and elimination of human NGF during long-term delivery to the brain
6. Preparative electrochromatography of proteins in various types of porous media
7. Flow dichroism of DNA: A new apparatus and further studies
8. DNA orientation in shear flow
9. Dielectric relaxation of biopolymers in solution
10. Regulation of band 3 rotational mobility by ankyrin in intact human red cells
11. Green flourescent protein as a probe to study intracellular solute diffusion
12. 13C off-resonance rotating frame spin-lattice relaxation: Effect of polydispersity
13. Measurement of the rotational diffusion coefficient of lysozyme by depolarized light scattering: Configuration of lysozyme in solution
14. Hydrodynamic steering effects in protein association
15. 15N chemical shift anisotropy and chemical exchange contributions
16. Efficient analysis of macromolecular rotational diffusion from heteronuclear relaxation data
17. Theory of flourescence depolarization by anisotropic rotational diffusion
18. Precision measurements of binary and multicomponent diffusion coefficients in protein solutions relevant to crystal growth: Lysozyme chloride in water and aqueous NaCl at pH 4.5 and 25 °C
19. Diffusion of lysozyme chloride in water and aqueous potassium chloride solutions
20. Use of Taylor-Aris dispersion for measurement of a solute diffusion coefficient in thin capillaries
21. Determination of oligomeric state of proteins in solution from pulsed-field-gradient self-diffusion coefficient measurements. A comparison of experimental, theoretical, and hard-sphere approximated values
22. A versatile optical diffusiometer including a large optical bench of new design
23. Molecular spectroscopy and dynamics of intrinsically flourescent proteins: Coral red (dsRed) and yellow (citrine)
24. Structural aspects and orientation mechanism of mitochondrial Fl-adenosine triphosphatase. Evidence for a negative electric birefringence due to a permanent moment perpendicular to the long axes of the particle
25. Characterization of selectively carbon-13 labeled synthetic melittin and melittin analogs in isotropic solvents by circular dichroism, fluorescence and NMR spectroscopy
26. 2
27. 15N relaxation
28. Predicting protein diffusion coefficients
29. Coupling between the translational and rotational Brownian motions of rigid particles of arbitrary shape. II. General theory
30. A singularity method for calculating hydrodynamic forces and particle velocities in low-Reynolds-number flows
31. Influence of inhibitor binding on the internal motions of lysozyme
32. Molecular dynamics and NMR spin relaxation in proteins
33. Crystal structure of the anthrax lethal factor
34. Calculation of hydrodynamic properties of globular proteins from their atomic-level structures
35. HYDRONMR: Prediction of NMR relaxation of globular proteins from atomic-level structures and hydrodynamic calculations
36. The protein data bank
37. Second kind integral equation formulation of Stokes' flows past a particle of arbitrary shape
38. Interaction of rotational and translational diffusion
39. Reduced surface: An efficient way to compute molecular surfaces
40. An algorithm for sparse linear equations and sparse least-squares
41. An x-ray study of the structure and binding properties of iodine-inactivated lysozyme
42. Gaussian quadrature formulas for triangles
43. Diffusion coefficients for rigid macromolecules with irregular shapes that allow rotational-translational coupling
44. A refined solution structure of hen lysozyme determined using residual dipolar coupling data
45. Protein model building by the use of a constrained-restrained least-squares procedure
46. Real-space refinement of the structure of hen egg-white lysozyme
47. 15N NMR relaxation
48. Dynamics of flourescence polarization in macromolecules
49. Hydrodynamic properties of rigid particles: Comparison of different modeling and computational procedures
50. An empirical relationship between rotational correlation time and solvent accessible surface area
51. Hydration of proteins and polypeptides
52. Use of the flourescence technique as an absolute method for obtaining mean relaxation times of globular proteins
53. Rotational relaxation time of pyridoxyl 5-phosphate lysozyme
54. Kerr effect study of the aqueous solutions of three globular proteins
55. The rotational diffusion of bovine α-lactalbumin: A comparison with egg white lysozyme
56. Dépolarisation de flourescence du lysozyme-DNS
57. Electric properties of macromolecules. VIII. Kerr constants and rotational diffusion of some proteins in water and in glycerol-water solutions
58. 15N NMR relaxation measurements for main-chain and sidechain nuclei of hen egg-white lysozyme
59. Translational and rotational diffusion of proteins
60. Influence of dielectric friction and near-surface increase of viscosity on rotational Brownian motion of charged biopolymers in solution
61. Lysozyme net charge and ion binding in concentrated aqueous electrolyte solutions
62. Interactions of lysozyme in concentrated electrolyte solutions from dynamic light scattering measurements
63. Molecular interactions in crystallizing lysozyme solutions studied by photon correlation spectroscopy
64. Thermodynamics of diffusion in multicomponent systems
65. Diffusion studies of bovine serum albumin by quasielastic light scattering
66. Coulombic interaction and ion-protein macroion coupled diffusion evidenced by light scattering
67. Hydrodynamic properties of macromolecular complexes. I. Translation
68. Hydrodynamic properties of macromolecular complexes. II. Rotation
69. Rapid solution of integral equations of classical potential theory
70. A spectral boundary element approach to three-dimensional Stokes flow
71. An adaptive mesh algorithm for evolving surfaces: Simulations of drop breakup and coalescence
72. Modeling the electrophoresis of rigid polyions: Application to lysozyme
73. Modeling the free solution electrophoretic mobility of short DNA fragments
74. Boundary element modeling of biomolecular transport
75. Computation of the electrophoretic mobility of proteins