An empirical relationship between rotational correlation time and solvent accessible surface area

Journal of Biomolecular NMR

Volumn 12, Issue 1, 1998, Pages 177-182

  Krishnan, V V ^a   Cosman, Monique ^a  

^a LAWRENCE LIVERMORE NATIONAL LABORATORY   (United States)

Author keywords

Rotational correlation time; Solvent accessible surface area; Structure and dynamics

Indexed keywords

SASA;

EID: 0001340405     PISSN: 09252738     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1008226330666     Document Type: Article

References (48)

1. Barbato, G., Ikura, M., Kay, L.E., Pastor, R.W. and Bax, A. (1992) Biochemistry, 31, 5269-5278.
2. Bruschweiler, R., Liao, X.B. and Wright, P.E. (1995) Science, 268, 886-889.
3. Buck, M., Boyd, J., Redfield, C., MacKenzie, D.A., Jeenes, D.J., Archer, D.B., and Dobson, C.M. (1995) Biochemistry, 34, 4041-4055.
4. Buck, M., Schwalbe, H. and Dobson, C.M. (1996) J. Mol. Biol., 257, 669-683.
5. Cantor, C.R. and Schimmel, P.R. (1980) Biophysical Chemistry, part. II, Techniques for the Study of Biological Structure and Function, W.H. Freeman, San Francisco, CA, pp. 539-590.
6. Carper, W.P. and Keller, C.E. (1997) J. Phys. Chem. Ser A, 101, 3246-3250.
7. Creamer T.P., Srinivasan, R. and Rose, G.D. (1997) Biochemistry, 36, 2832-2835.
8. Dayie, K.T., Wagner, G. and Lefèvre, J.-F. (1996) Annu. Rev. Phys. Chem., 47, 243-282.
9. Delpuech, J. (Ed.) (1995) Dynamics of Solutions and Fluid Mixtures., Wiley, New York, NY, Chapters I, II, and VII.
10. Eimer, W., Williamson, J.R., Boxer, S.G. and Pecora, R. (1990) Biochemistry, 29, 799-811.
11. Eisenberg, D. and McLachlan, A.D. (1986) Nature, 319, 199-203.
12. García de la Torre, J. and Bloomfield, N.A. (1981) Quart. Rev. Biophys., 14, 81-139.
13. García de la Torre, J., Navarro, S., Lopez Martinez, M.C., Diaz, F.G. and Lopez Cascales, J.J. (1994) Biophys. J., 67, 530-531.
14. Gerstein, M. and Lynden-Bell, R.M. (1993) J. Mol. Biol., 230, 641-650.
15. Güntert, P. (1997) in Protein NMR techniques, (Ed., Reid, B.R.), Humana Press, NJ, pp. 157-194.
16. Jones, D.N.M., Searles, M.A., Shaw, G.L., Churchill, M.E.A., Ner, S.S., Keller, J., Travers, A.A. and Neuhaus, D. (1994) Structure, 2, 609-627.
17. Kay, L.E., Torchia, D.A. and Bax, A. (1989) Biochemistry, 28, 8972-8979.
18. Koenig, S.H. (1975) Biopolymers, 14, 2421-2423.
19. Krishnan, V.V. (1997) J. Magn. Reson., 124, 468-473.
20. Lee, B. and Richards, F.M. (1971) J. Mol. Biol., 55, 379-400.
21. Luginbühl, P., Pervushin, K.V., Iwai, H. and Wüthrich, K. (1997) Biochemistry, 36, 7305-7312.
22. MacKay, J.P., Shaw, G.L. and King, G.F. (1996) Biochemistry, 35, 4867-4877.
23. Müller, J.J. (1991) Biopolymers, 31, 149-160.
24. Nirmala, N.R. and Wagner, G. (1988) J. Am. Chem. Soc., 110, 7557-7558.
25. Paci, E. and Velikson, B. (1997) Biopolymers, 41, 785-797.
26. Palmer, A.G., Rance, M. and Wright, P.E. (1991) J. Am. Chem. Soc., 113, 4371-4380.
27. Palmer, A.G., Williams, J. and McDermott, A. (1996) J. Phys. Chem., 100, 13293-13310.
28. Peng, J.W. and Wagner, G. (1995) Biochemistry, 34, 16733-16752.
29. Press, W.H., Flannery, B.P., Teukolsky, S.A. and Vetterling, W.T. (1988) Numerical Recipes: The Art of Scientific Computing, Cambridge University Press, New York, NY, pp. 498-546.
30. Primrose, W.U. (1993) In NMR of Macromolecules, A Practical Approach (Ed., Roberts, G.C.K.) Oxford University Press, Oxford, p. 9.
31. Richards, F.M. (1977) Annu. Rev. Biophys. Bioeng., 6, 151-176.
32. Richmond, T.J. (1984) J. Mol. Biol., 178, 2133-2141.
33. Robert, C.H. (1995) Biophys. J., 69, 840-848.
34. Smith, P.E. and van Gunsteren, W.F. (1994) J. Mol. Biol., 236, 629-635.
35. Squire, P.G. and Himmel, M.E. (1979) Arch. Biochem. Biophys., 196, 165-177.
36. Tanford, C. (1963) Physical Chemistry of Macromolecules, Wiley, New York, NY, pp. 317-456.
37. Tjandra, N., Kuboniwa, H., Ren, H. and Bax, A. (1995) Eur. J. Biochem., 230, 1014-1024.
38. Tjandra, N., Garrett, D.S., Gronenborn, A.M., Bax, A. and Clore, G.M. (1997) Nat. Struct. Biol., 4, 443-449.
39. Tycko, R. (Ed.) (1994) Nuclear Magnetic Resonance Probes of Molecular Dynamics, Kluwer Academic Publishers, Dordrecht.
40. van Holde, K.E., (1985) Physical Chemistry, 2nd ed., Prentice-Hall Inc., Englewood Cliffs, NJ.
41. van Mierlo, C.P.M., Darby, N.J., Keller, J., Neuhaus, D. and Creighton, T.E. (1993) J. Mol. Biol., 229, 1125-1146.
42. Venable, R.M. and Pastor, R.W. (1988) Biopolymers, 27, 1001-1014.
43. Viswanath, D.S. and Natarajan, G. (1989) Data Book on the Viscosity of Liquids, Hemishere, New York, NY
44. Walters, K.J., Dayie, K.T., Reece, R.J., Ptashne, M. and Wagner, G. (1997) Nat. Struct. Biol., 4, 744-750.
45. Wüthrich, K. (1986) NMR of Proteins and Nucleic Acids, Wiley, New York, NY
46. Yu-Orekhov, V., Nolde, D.E., Golovanov, A.P., Dorzhnev, D.M. and Arseniev, A.S. (1995) Appl. Magn. Reson., 9, 581-588.
47. Zhou, H.-X. (1995a) Biophys. J., 69, 2286-2297.
48. Zhou, H.-X. (1995b) Biophys. J., 69, 2298-2303.