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Volumn 35, Issue 3, 2002, Pages 160-170

Computational selection of distinct class- and subclass-specific gene expression signatures

Author keywords

ANOVA; Bioinformatics; Classification; Clustering; Gene expression; LDA; Microarray; Pattern recognition

Indexed keywords

CLOFIBRATE; ENZYME INDUCING AGENT; GEMFIBROZIL; PEROXISOME PROLIFERATOR; PHENOBARBITAL; UNCLASSIFIED DRUG; WYETH 14 643;

EID: 0036628189     PISSN: 15320464     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1532-0464(02)00525-7     Document Type: Article
Times cited : (44)

References (33)
  • 1
    • 0033536012 scopus 로고    scopus 로고
    • Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays
    • Alon U., Barkai N., Notterman D.A.et al. Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays. Proc. Natl. Acad. Sci. USA. 96:1999;6745-6750.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 6745-6750
    • Alon, U.1    Barkai, N.2    Notterman, D.A.3
  • 2
    • 0033569406 scopus 로고    scopus 로고
    • Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
    • Golub T.R., Slonim D.K., Tamayo P.et al. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science. 286:1999;531-537.
    • (1999) Science , vol.286 , pp. 531-537
    • Golub, T.R.1    Slonim, D.K.2    Tamayo, P.3
  • 3
    • 0035931947 scopus 로고    scopus 로고
    • Gene-expression profiles in hereditary breast cancer
    • Hedenfalk I., Duggan D., Chen Y.et al. Gene-expression profiles in hereditary breast cancer. N. Engl. J. Med. 344:2001;539-548.
    • (2001) N. Engl. J. Med. , vol.344 , pp. 539-548
    • Hedenfalk, I.1    Duggan, D.2    Chen, Y.3
  • 4
    • 18244409687 scopus 로고    scopus 로고
    • Gene expression profiling predicts clinical outcome of breast cancer
    • van 't Veer L.J., Dai H., van de Vijver M.J.etal Gene expression profiling predicts clinical outcome of breast cancer. Nature. 415:2002;530-536.
    • (2002) Nature , vol.415 , pp. 530-536
    • Van't Veer, L.J.1    Dai, H.2    Van De Vijver, M.J.3    et, l.4
  • 5
    • 18544366104 scopus 로고    scopus 로고
    • Application of cDNA microarrays to generate a molecular taxonomy capable of distinguishing between colon cancer and normal colon
    • Zou T.T., Selaru F.M., Xu Y.et al. Application of cDNA microarrays to generate a molecular taxonomy capable of distinguishing between colon cancer and normal colon. Oncogene. 21:2002;4855-4862.
    • (2002) Oncogene , vol.21 , pp. 4855-4862
    • Zou, T.T.1    Selaru, F.M.2    Xu, Y.3
  • 6
    • 0347201147 scopus 로고    scopus 로고
    • Multiclass cancer diagnosis using tumor gene expression signatures
    • Ramaswamy S, Tamayo P, Rifkin R, et al. Multiclass cancer diagnosis using tumor gene expression signatures. Proc Natl Acad Sci USA 2000;98:15149-54.
    • (2000) Proc Natl Acad Sci USA , vol.98 , pp. 15149-15154
    • Ramaswamy, S.1    Tamayo, P.2    Rifkin, R.3
  • 7
    • 0035845511 scopus 로고    scopus 로고
    • Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications
    • Sorlie T., Perou C.M., Tibshirani R.et al. Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications. Proc. Natl. Acad. Sci. USA. 98:2001;10869-10874.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 10869-10874
    • Sorlie, T.1    Perou, C.M.2    Tibshirani, R.3
  • 8
    • 0035810997 scopus 로고    scopus 로고
    • Recursive partitioning for tumor classification with gene expression microarray data
    • Zhang H, Yu CY, Singer B, Xiong M. Recursive partitioning for tumor classification with gene expression microarray data. Proc Natl Acad Sci USA 2000;98:6730-5.
    • (2000) Proc Natl Acad Sci USA , vol.98 , pp. 6730-6735
    • Zhang, H.1    Yu, C.Y.2    Singer, B.3    Xiong, M.4
  • 10
    • 0034518116 scopus 로고    scopus 로고
    • Toxicogenomics-based discrimination of toxic mechanism in HepG2 human hepatoma cells
    • Burczynski M.E., McMillian M., Ciervo J.et al. Toxicogenomics-based discrimination of toxic mechanism in HepG2 human hepatoma cells. Toxicol. Sci. 58:2000;399-415.
    • (2000) Toxicol. Sci. , vol.58 , pp. 399-415
    • Burczynski, M.E.1    McMillian, M.2    Ciervo, J.3
  • 11
    • 17944366528 scopus 로고    scopus 로고
    • Clustering of hepatotoxins based on mechanism of toxicity using gene expression profiles
    • Waring J.F., Jolly R.A., Ciurlionis R.et al. Clustering of hepatotoxins based on mechanism of toxicity using gene expression profiles. Toxicol. Appl. Pharmacol. 175:2001;28-42.
    • (2001) Toxicol. Appl. Pharmacol. , vol.175 , pp. 28-42
    • Waring, J.F.1    Jolly, R.A.2    Ciurlionis, R.3
  • 12
    • 0031246430 scopus 로고    scopus 로고
    • Ratio-based decisions and the quantitative analysis of cDNA microarray images
    • Chen Y., Dougherty E.R., Bittner M.L. Ratio-based decisions and the quantitative analysis of cDNA microarray images. J. Biomed. Opt. 2:1997;364-374.
    • (1997) J. Biomed. Opt. , vol.2 , pp. 364-374
    • Chen, Y.1    Dougherty, E.R.2    Bittner, M.L.3
  • 13
    • 0034961692 scopus 로고    scopus 로고
    • MAPS: A microarray project system for gene expression experiment information and data validation
    • Bushel P.R., Hamadeh H.K., Bennett L.et al. MAPS: a microarray project system for gene expression experiment information and data validation. Bioinformatics. 17:2001;564-565.
    • (2001) Bioinformatics , vol.17 , pp. 564-565
    • Bushel, P.R.1    Hamadeh, H.K.2    Bennett, L.3
  • 19
    • 0003965698 scopus 로고
    • H.C. Romesburg. Malabar, FL: Krieger Publishing Company
    • Romesburg H.C. Cluster analysis for researchers. 1984;Krieger Publishing Company, Malabar, FL.
    • (1984) Cluster analysis for researchers
  • 20
    • 0034730124 scopus 로고    scopus 로고
    • Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations
    • Lee M.T., Kuo F.C., Whitmore G.A., Sklar J. Importance of replication in microarray gene expression studies: statistical methods and evidence from repetitive cDNA hybridizations. Proc. Natl. Acad. Sci. USA. 97:2000;9834-9839.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 9834-9839
    • Lee, M.T.1    Kuo, F.C.2    Whitmore, G.A.3    Sklar, J.4
  • 21
    • 0033518873 scopus 로고    scopus 로고
    • Searching for evidence of altered gene expression: A comment on statistical analysis of microarray data
    • Wittes J., Friedman H.P. Searching for evidence of altered gene expression: a comment on statistical analysis of microarray data. J. Natl. Cancer Inst. 91:1999;400-401.
    • (1999) J. Natl. Cancer Inst. , vol.91 , pp. 400-401
    • Wittes, J.1    Friedman, H.P.2
  • 23
    • 0034927555 scopus 로고    scopus 로고
    • Analysis of variance for gene expression microarray data
    • Kerr M.K., Martin M., Churchill G.A. Analysis of variance for gene expression microarray data. J. Comput. Biol. 7:2000;819-837.
    • (2000) J. Comput. Biol. , vol.7 , pp. 819-837
    • Kerr, M.K.1    Martin, M.2    Churchill, G.A.3
  • 24
    • 0031614692 scopus 로고    scopus 로고
    • Regulation of cytochrome P450 gene transcription by phenobarbital
    • Kemper B. Regulation of cytochrome P450 gene transcription by phenobarbital. Prog. Nucleic Acid Res. Mol. Biol. 61:1998;23-64.
    • (1998) Prog. Nucleic Acid Res. Mol. Biol. , vol.61 , pp. 23-64
    • Kemper, B.1
  • 25
    • 0034730126 scopus 로고    scopus 로고
    • Integration of the ubiquitin-proteasome pathway with a cytosolic oligopeptidase activity
    • Wang E.W., Kessler B.M., Borodovsky A.et al. Integration of the ubiquitin-proteasome pathway with a cytosolic oligopeptidase activity. Proc. Natl. Acad. Sci. USA. 97:2000;9990-9995.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 9990-9995
    • Wang, E.W.1    Kessler, B.M.2    Borodovsky, A.3
  • 26
    • 0036372855 scopus 로고    scopus 로고
    • New feature subset selection procedures for classification of expression profiles
    • research0017.1-research0017.11
    • Bo T., Jonassen I. New feature subset selection procedures for classification of expression profiles. Genome. Biol. 3:2002;research0017.1-research0017.11.
    • (2002) Genome. Biol. , vol.3
    • Bo, T.1    Jonassen, I.2
  • 27
    • 0036139278 scopus 로고    scopus 로고
    • Gene selection for sample classification based on gene expression data: Study of sensitivity to choice of parameters of the GA/KNN method
    • Li L., Weinberg C.R., Darden T.A., Pedersen L.G. Gene selection for sample classification based on gene expression data: study of sensitivity to choice of parameters of the GA/KNN method. Bioinformatics. 17:2001;1131-1142.
    • (2001) Bioinformatics , vol.17 , pp. 1131-1142
    • Li, L.1    Weinberg, C.R.2    Darden, T.A.3    Pedersen, L.G.4
  • 28
    • 0035687554 scopus 로고    scopus 로고
    • Assessing gene significance from cDNA microarray expression data via mixed models
    • Wolfinger R.D., Gibson G., Wolfinger E.D.et al. Assessing gene significance from cDNA microarray expression data via mixed models. J. Comput. Biol. 8:2001;625-637.
    • (2001) J. Comput. Biol. , vol.8 , pp. 625-637
    • Wolfinger, R.D.1    Gibson, G.2    Wolfinger, E.D.3
  • 29
    • 0036126861 scopus 로고    scopus 로고
    • A systematic statistical linear modeling approach to oligonucleotide array experiments
    • Chu T.M., Weir B., Wolfinger R. A systematic statistical linear modeling approach to oligonucleotide array experiments. Math. Biosci. 176:2002;35-51.
    • (2002) Math. Biosci. , vol.176 , pp. 35-51
    • Chu, T.M.1    Weir, B.2    Wolfinger, R.3
  • 30
    • 0142128826 scopus 로고    scopus 로고
    • Gene expression analysis reveals chemical-specific profiles
    • Hamadeh H.K., Bushel P.R., Jayadev S.et al. Gene expression analysis reveals chemical-specific profiles. Toxicol. Sci. 67:2002;219-231.
    • (2002) Toxicol. Sci. , vol.67 , pp. 219-231
    • Hamadeh, H.K.1    Bushel, P.R.2    Jayadev, S.3
  • 31
    • 0142065599 scopus 로고    scopus 로고
    • Prediction of compound signature using high density gene expression profiling
    • Hamadeh H.K., Bushel P.R., Jayadev S.et al. Prediction of compound signature using high density gene expression profiling. Toxicol. Sci. 67:2002;232-240.
    • (2002) Toxicol. Sci. , vol.67 , pp. 232-240
    • Hamadeh, H.K.1    Bushel, P.R.2    Jayadev, S.3
  • 32
    • 0034526621 scopus 로고    scopus 로고
    • Microarray expression profiling identifies genes with altered expression in HDL-deficient mice
    • Callow M.J., Dudoit S., Gong E.L., Speed T.P., Rubin E.M. Microarray expression profiling identifies genes with altered expression in HDL-deficient mice. Genome. Res. 10:2000;2022-2029.
    • (2000) Genome. Res. , vol.10 , pp. 2022-2029
    • Callow, M.J.1    Dudoit, S.2    Gong, E.L.3    Speed, T.P.4    Rubin, E.M.5
  • 33
    • 0036628957 scopus 로고    scopus 로고
    • Methapyrilene toxicity: Anchorage of pathologic observations to gene expression alterations
    • Hamadeh H.K., Knight B.L., Haugen A.C.et al. Methapyrilene toxicity: anchorage of pathologic observations to gene expression alterations. Toxicol. Pathol. 30:2002;470-482.
    • (2002) Toxicol. Pathol. , vol.30 , pp. 470-482
    • Hamadeh, H.K.1    Knight, B.L.2    Haugen, A.C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.