Evolution of nitrate reductase: Molecular and structural variations on a common function

ChemBioChem

Volumn 3, Issue 2-3, 2002, Pages 198-206

  Stolz, John F ^a   Basu, Partha ^a  

^a DUQUESNE UNIVERSITY   (United States)

Author keywords

Bioinorganic chemistry; Cell biology; Metalloenzymes; Nitrate reductase; Nitrogen

Indexed keywords

AMMONIA; CYTOCHROME; CYTOCHROME CD1; METALLOPROTEINASE; MOLYBDENUM; NITRATE REDUCTASE; NITROGEN; PROTEIN; PROTEIN NAP; PROTEIN NAR; PROTEIN NAS; PTERIN DERIVATIVE; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ANAEROBIC BACTERIUM; ARTICLE; BINDING SITE; CHEMICAL REACTION; CLADISTICS; CYTOLOGY; DESULFOVIBRIO; ENZYME ANALYSIS; ENZYME MECHANISM; ENZYME STRUCTURE; EUKARYOTIC CELL; EVOLUTION; GENE TRANSFER; NONHUMAN; NUCLEOTIDE SEQUENCE; ORGANIC CHEMISTRY; PHYLOGENY; PRIORITY JOURNAL; PROKARYOTE; REDUCTION; STRUCTURE ACTIVITY RELATION; TAXONOMY; UNINDEXED SEQUENCE;

AMINO ACID SEQUENCE; BINDING SITES; EVOLUTION, MOLECULAR; MOLECULAR SEQUENCE DATA; NITRATE REDUCTASES; PHYLOGENY; SEQUENCE HOMOLOGY, AMINO ACID;

BACTERIA (MICROORGANISMS); DESULFOVIBRIO; DESULFOVIBRIO DESULFURICANS; EUKARYOTA; PROKARYOTA;

EID: 0036523461     PISSN: 14394227     EISSN: None     Source Type: Journal    
DOI: 10.1002/1439-7633(20020301)3:2/3<198::AID-CBIC198>3.0.CO;2-C     Document Type: Article

References (81)

1. D. J. Richardson, B. C. Bercks, D. A. Russell, S. Spiro, C. J. Taylor, Cell. Mol. Life Sci. 2001, 58, 165-178.
2. W. H. Campbell, Cell Mol. Life Sci. 2001, 58, 194-204.
3. Note that the pyranopterin cofactor (sometimes referred to as molybdopterin) does not contain molybdenum. The molybdenum-bound form is called molybdenum cofactor. For a detailed discussion, see: B. Fischer, J. H. Enemark, P. Basu, J. Inorg. Biochem. 1998, 72, 13-21.
4. W. H. Campbell, Annu. Rev. Plant Physiol. Plant Mol Biol. 1999, 50,277-303.
5. S. Ramirez-Arcos, L. A. Fernandez-Herrero, I. Marin, J. Berenguer, Biochim. Biophys. Acta 1997, 1396 215-227.
6. P. Volkl, R. Huber, E. Drobner, R. Rachel, S. Buggraf, A. Trincone, K. O. Stetter, Appl. Environ. Microbial. 1993, 59, 2918-2926.
7. W. G. Zumft, Microbiol. Mol. Biol. Rev. 1997, 67, 533-616.
8. R. Hille, Chem. Rev. 1996, 96, 2757-2816.
9. J. T. Lin, V. Stewart, Adv. Microb. Physiol. 1998, 39, 1-30.
10. F. Blasco, B. Guigliarelli, A. Maalon, M. Asso, G. Giordano, R. A. Rothery, Cell. Mol. Life Sci. 2001, 58, 179-193.
11. B. Berks, S. J. Ferguson, J. W. B. Moir, D. J. Richardson, Biochem. Biophys. Acta 1995, 1232, 97-173.
12. J. Carter, D. J. Richardson, S. Spiro, Arch. Microbiol 1995, 163, 159-166.
13. B.C. Berks, D. J. Richardson, A. Reilly, A. C. Willis, S. J. Ferguson, Biochem. J. 1995, 309, 983-992.
14. D. M. M. Castillo, F. Reyes, R. Blasco, M. D. Roldan, M. Gavira, F. J. Caballero, C. Moreno-Vivian, Curr. Microbial. 1996, 33, 341-346.
15. L. C. Potter, P. Millington, L. Griffiths, G. H. Thomas, J. A. Cole, Biochem. J. 1999, 344, 77-84.
16. C. Moreno-Vivian, P. Cabello, M. Martinez-Luque, R. Blasco, F. Castillo, J. Bacteriol. 1999, 181, 6573-6584.
17. L. Bedzyk, T. Wang, R. W. Ye, J. Bacteriol. 1999, 187, 2802-2806.
18. S. Bursakov, M-Y Liu, W. J. Payne, J. LeGall, I. Moura, J. J. G. Moura, Anaerobe 1995, 1, 55-60.
19. J. A. Cole in The Nitrogen and Sulfur Cycles (Eds.: J. A. Cole, S. J. Ferguson), Cambridge University Press, Cambridge, 1988, pp. 281-329.
20. J. A. Cole, FEMS Microbiol. Lett. 1996, 136, 1-11.
21. V. Stewart, Microbiol. Rev. 1988, 52, 190-232.
22. A. D. Moodie, W. J. Ingledew, Adv. Micro. Phys. 1990, 31, 225-269.
23. H. Stouthamer in Biology of Anaerobes (Ed.: M. Zehnder), Blackwell Scientific, Boston, 1988, pp. 245-303.
24. J. M. Tiedje in Biology of Anaerobes (Ed.: M. Zehnder), Blackwell Scientific, Boston, 1988, pp. 179-244.
25. P. A. Ketchum, W. J. Payne, Appl. Environ. Microbiol 1992, 58, 3586-3592.
26. L. Philippot, O. Hojberg, Biochim. Biophys. Acta. 1999, 1446 1-23.
27. P. A. Ketchum, G. Denariaz, J. LeGall, W. J. Payne, J. Bacteriol. 1991, 173, 2498-2505.
28. W. G. Zumft, H. Koerner, Antonie van Leeuwenhoek 1997, 71, 43-58.
29. S. Bursakov, M.-Y. Liu, W. J. Payne, J. LeGall, I. Moura, J. J. G. Moura, Anaerobe 1995, 1, S5-60.
30. D. J. Richardson, A. G. McEwan, M. D. Page, J. B. Jackson, S. J. Ferguson, Eur. J. Biochem. 1990, 194, 263-270.
31. B. Berks, D. J. Richardson, C. Robinson, A. Reilly, R. T. Aplin, S. J. Ferguson, Eur. J. Biochem. 1994, 220, 117-124.
32. A. N. Antipov, N. N. Lyalikova, T. V. Khijniak, N. P. L'vov, FEBS Lett. 1998, 444, 257-260.
33. S. Afshar, C. Kim, H. G. Monbouquette, I. Schroeder, Appl. Environ. Microbiol. 1998, 64, 3004-3008.
34. F. Martinez Murillo, T. Gugliuzza, J. F. Senko, P. Basu, J. F. Stolz, Arch. Microbiol. 1999, 147, 1-14.
35. S. Kajie, Y. Anraku, Eur. J. Biochem. 1986, 154, 457-463.
36. M.-C. Liu, H. D. Peck, Jr, J. Biol. Chem. 1981, 256, 13159-13164.
37. W. Schumacher, U. Hole, P. M. H. Kroneck, Biochem. Biophys. Biophys. Res. Comm. 1994, 205, 911-916.
38. G. B. Smith, J. M. Tiedje, Appl. Environ. Microbiol. 1992, 58, 376-384.
39. T. Brittain, R. Blackmore, C. Greenwood, A. J. Thomson, Eur. J. Biochem. 1992, 209, 793-802.
40. O. Einsle, A. Messerschmidt, P. Stach, G. P. Bourenkov, H. D. Bartunik, R. Huber, P. M. H. Kroneck, Nature 1999, 400, 476-480.
41. J. A. Gerlt, P. C. Babbitt, Genome Biology 2000, 1, 1-10.
42. K. E. Nelson, I. T. Paulsen, J. F Heidelberg, C. M. Fraser, Nat. Biotechnol. 2000, 18, 1049-1054.
43. D. G. Higgins, P. M. Sharp, Comput. Appl. Biosci. 1989, 5, 151-153;
44. D. G. Higgins, Adv. Protein Chem. 2000, 54, 99-135.
45. J. Felsenstein, Annu. Rev. Genet. 1988, 22, 521-526.
46. D. L. Swofford, PAUP (Phylogenetic Analysis Using Parsimony; and Other Methods), Version 4, Sinauer Associates, Sunderland, Massachusetts, 1998.
47. W. H. Campbell, J. H. Kinghorn, Trends Biochem. Sci. 1990, 15, 315-319.
48. W. H. Campbell, Plant Physiol. 1996, 111, 355-361.
49. R. Tischner, Plant Cell Environ. 2000, 23, 1005-1024.
50. G. Van der Auwera, S. Chapelle, R. De Wachter, FEBS Lett. 1994, 338, 133-136;
51. G. Van der Auwera, R. De Baere, Y. Van de Peer, P. De Rijk, R. De Wachter, Mol. Biol. Evol. 1995, 12, 671-678;
52. J. H. Gunderson, H. Elwood, A. Ingold, K. Kindle, M. L. Sogin, Proc. Natl. Acad. Sci. 1987, 84, 5823-5827.
53. K. Yoshimatsu, T Sakurai, T. Fujiwara, FEBS Lett. 2000, 470, 216-220.
54. J. Castresana, D. Moreira, J. Mol. Evol. 1999, 49, 453-460.
55. P. Ralf, J. F. Imhoff, Syst. Appl. Microbiol. 2000, 23, 47-57.
56. J. G. Lawrence, Curr. Opin. Genet. Dev. 1999, 9, 642-648.
57. S. Ramirez-Arcos, L. A. Fernandez-Herrero, I. Marin, J. Berenguer, J. Bacteriol. 1998, 180, 3137-3143.
58. R. A. Siddiqui, U. Warneck-Eberz, A. Hengsberger, B. Schneider, B. Friedrich, J. Bacteriol. 1993, 175, 5867-5876.
59. J. L. Johnson, K. V. Rajagopalan, Proc. Natl. Acad. Sci. USA 1982, 79, 6856-6860;
60. J. L. Johnson, B. E. Hainline, K. V. Rajagopalan, B. H. Arison, J. Biol. Chem. 1984, 259, 5414-5422.
61. C. Kisker, H. Schindelin, A. Pacheco, W. W. Wehbi, R. M. Garrett, K. V. Rajagopalan, J. H. Enemark, D. C. Rees, Cell 1997, 91 973-983.
62. J. M. Dias, M. E. Than, A. Humm, R. Huber, G. P. Bourenkov, H. D. Bartunik, S. Bursakov, J. Calvete, J. Caldeira, C. Carneiro, J. J. G. Moura, I. Moura, M. J. Romão, Structure 1999, 7, 65-79.
63. G. N. George, J. A. Mertens, W. H. Campbell, J. Am. Chem. Soc. 1999, 121, 9730-9731.
64. B. C. Berks, F. Sargent, T. Palmer, Mol. Microbiol. 2000, 35, 260-274;
65. B. C. Berks, Mol. Microbiol. 1996, 22, 393.
66. C. A. Trieber, R. A. Rothery, J. H. Weiner, J. Biol. Chem. 1996, 271, 4620-4626;
67. J. H. Weiner, R. A. Rothery, D. Sambassivarao, C. A. Trieber, Biochim. Biophys. Acta 1992, 1102, 1-18.
68. A. Magalon, M. Asso, B. Guigliarelli, R. A. Rothery, P. Bertrand, G. Giordano, F. Blasco, Biochemistry 1998, 37,7363-7370.
69. G. N. George, N. A. Turner, B. C. Bray, F. F. Morpeth, D. H. Boxer, S. P. Cramer, Biochem. J. 1989, 259, 693-700.
70. H.-K. Li, C. Temple, K. V. Rajagopalan, H. Schindelin, J. Am. Chem. Soc. 2000, 122, 7673-7680;
71. H. Schindelin, C. Kisker, J. Hilton, K. V. Rajagopalan, D. C. Rees, Science 1996, 272, 1615-1621.
72. A. S. McAlpine, A. G. McEwan, S. Bailey, J. Mol. Biol. 1998, 275, 613-623;
73. A. S. McAlpine, A. G. McEwan, A. L. Shaw, S. Bailey, J. Biol. Inorg. Chem. 1997, 2, 690-701;
74. F. Schneider, J. Loewe, R. Huber, H. Schindelin, C. Kisker, J. Knaeblein, J. Mol. Biol. 1996, 263, 53-69;
75. J. Knablein, H. Dobbek, S. Ehlert, F. Schneider, J. Biol. Chem. 1997, 378, 293-302.
76. S. D, Garton, J. Hilton, H. Oku, B. R. Crouse, K. V. Rajagopalan, M. K. Johnson, J. Am. Chem. Soc. 1997, 119, 12906-12916;
77. M. K. Johnson, S. D. Garton, H. Oku, J. Biol. Inorg. Chem. 1997, 2,797-803;
78. A. F. Bell, X. He, J. P. Ridge, G. R. Hanson, A. G. McEwan, R J. Tonge, Biochemistry 2001, 40, 440-448;
79. P. E. Baugh, C. D. Garner, J. M. Charnock, D. Collison, E. S. Davies, A. S. McAlpine, S. Bailey, I. Lane, G. R. Hanson, A. G. McEwan, J. Biol. Inorg. Chem. 1997, 2,634-643;
80. G. N. George, J. Hilton, C. Temple, R. C. Prince, K. V. Rajagopalan, J. Am. Chem. Soc. 1999, 121 1256-1266;
81. G. N. George, J. Hilton, K. V. Rajagopalan, J. Am. Chem. Soc. 1996, 118, 1113-1117.