메뉴 건너뛰기




Volumn 46, Issue 4, 2002, Pages 959-969

Two distinct regions on the surface of an RNA-binding domain are crucial for RNase E function

Author keywords

[No Author keywords available]

Indexed keywords

ISOENZYME; RIBONUCLEASE E; UNCLASSIFIED DRUG;

EID: 0036434916     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2958.2002.03231.x     Document Type: Article
Times cited : (23)

References (46)
  • 1
    • 0018072940 scopus 로고
    • Isolation, genetic mapping, and some characterization of a mutation in Escherichia coli that affects the processing of ribonucleic acids
    • Apirion, D. (1978) Isolation, genetic mapping, and some characterization of a mutation in Escherichia coli that affects the processing of ribonucleic acids. Genetics 90: 659-671.
    • (1978) Genetics , vol.90 , pp. 659-671
    • Apirion, D.1
  • 2
    • 0031951386 scopus 로고    scopus 로고
    • mRNA stabilization by the ompA 5′ untranslated region: Two protective elements hinder distinct pathways for mRNA degradation
    • Arnold, T.E., Yu, J., and Belasco, J.G. (1998) mRNA stabilization by the ompA 5′ untranslated region: Two protective elements hinder distinct pathways for mRNA degradation. RNA 4: 319-330.
    • (1998) RNA , vol.4 , pp. 319-330
    • Arnold, T.E.1    Yu, J.2    Belasco, J.G.3
  • 3
    • 0026008229 scopus 로고
    • The Ams (altered mRNA stability) protein and ribonuclease E are encoded by the same structural gene of Escherichia coli
    • Babitzke, P., and Kushner, S.R. (1991) The Ams (altered mRNA stability) protein and ribonuclease E are encoded by the same structural gene of Escherichia coli. Proc Natl Acad Sci USA 88: 1-5.
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 1-5
    • Babitzke, P.1    Kushner, S.R.2
  • 4
    • 0002860014 scopus 로고
    • mRNA degradation in prokaryotic cells. An overview
    • Belasco, J.G., and Brawerman, G. (eds). San Diego: Academic Press
    • Belasco, J.G. (1993) mRNA degradation in prokaryotic cells. An overview. In Control of Messenger RNA Stability. Belasco, J.G., and Brawerman, G. (eds). San Diego: Academic Press, pp. 3-12.
    • (1993) Control of Messenger RNA Stability , pp. 3-12
    • Belasco, J.G.1
  • 5
    • 0033120903 scopus 로고    scopus 로고
    • The structural basis for terminator recognition by the Rho transcription termination factor
    • Bogden, C.E., Fass, D., Bergman, N., Nichols, M.D., and Berger, J.M. (1999) The structural basis for terminator recognition by the Rho transcription termination factor. Mol Cell 3: 487-493.
    • (1999) Mol Cell , vol.3 , pp. 487-493
    • Bogden, C.E.1    Fass, D.2    Bergman, N.3    Nichols, M.D.4    Berger, J.M.5
  • 6
    • 0026062066 scopus 로고
    • Ribosome-messenger recognition: mRNA target sites for ribosomal protein S1
    • Boni, I.V., Isaeva, D.M., Musychenko, M.L., and Tzareva, N.V. (1991) Ribosome-messenger recognition: mRNA target sites for ribosomal protein S1. Nucleic Acids Res 19: 155-162.
    • (1991) Nucleic Acids Res , vol.19 , pp. 155-162
    • Boni, I.V.1    Isaeva, D.M.2    Musychenko, M.L.3    Tzareva, N.V.4
  • 7
    • 0026492668 scopus 로고
    • Control of RNase E-mediated RNA degradation by 5′-terminal base pairing in E. coli
    • Bouvet, P., and Belasco, J.G. (1992) Control of RNase E-mediated RNA degradation by 5′-terminal base pairing in E. coli. Nature 360: 488-491.
    • (1992) Nature , vol.360 , pp. 488-491
    • Bouvet, P.1    Belasco, J.G.2
  • 8
    • 0031471204 scopus 로고    scopus 로고
    • The solution structure of the S1 RNA binding domain: A member of an ancient nucleic acid-binding fold
    • Bycroft, M., Hubbard, T.J., Proctor, M., Freund, S.M., and Murzin, A.G. (1997) The solution structure of the S1 RNA binding domain: A member of an ancient nucleic acid-binding fold. Cell 88: 235-242.
    • (1997) Cell , vol.88 , pp. 235-242
    • Bycroft, M.1    Hubbard, T.J.2    Proctor, M.3    Freund, S.M.4    Murzin, A.G.5
  • 9
    • 0028849881 scopus 로고
    • Homology modeling by the ICM method
    • Cardozo, T., Totrov, M., and Abagyan, R. (1995) Homology modeling by the ICM method. Proteins 23: 403-414.
    • (1995) Proteins , vol.23 , pp. 403-414
    • Cardozo, T.1    Totrov, M.2    Abagyan, R.3
  • 10
    • 0028269435 scopus 로고
    • Co-purification of E. coli RNase E and PNPase: Evidence for a specific association between two enzymes important in RNA processing and degradation
    • Carpousis, A.J., Van Houwe, G., Ehretsmann, C., and Krisch, H.M. (1994) Co-purification of E. coli RNase E and PNPase: Evidence for a specific association between two enzymes important in RNA processing and degradation. Cell 76: 889-900.
    • (1994) Cell , vol.76 , pp. 889-900
    • Carpousis, A.J.1    Van Houwe, G.2    Ehretsmann, C.3    Krisch, H.M.4
  • 11
    • 0027411514 scopus 로고
    • Yeast tRNA (Asp) recognition by its cognate class II aminoacyl-tRNA synthetase
    • Cavarelli, J., Rees, B., Ruff, M., Thierry, J.C., and Moras, D. (1993) Yeast tRNA (Asp) recognition by its cognate class II aminoacyl-tRNA synthetase. Nature 362: 181-184.
    • (1993) Nature , vol.362 , pp. 181-184
    • Cavarelli, J.1    Rees, B.2    Ruff, M.3    Thierry, J.C.4    Moras, D.5
  • 12
    • 0025814702 scopus 로고
    • Structure and function of a bacterial mRNA stabilizer: Analysis of the 5′ untranslated region of ompA mRNA
    • Chen, L.-H., Emory, S.A., Bricker, A.L., Bouvet, P., and Belasco, J.G. (1991) Structure and function of a bacterial mRNA stabilizer: Analysis of the 5′ untranslated region of ompA mRNA. J Bacteriol 173: 4578-4586.
    • (1991) J Bacteriol , vol.173 , pp. 4578-4586
    • Chen, L.-H.1    Emory, S.A.2    Bricker, A.L.3    Bouvet, P.4    Belasco, J.G.5
  • 13
    • 0025754277 scopus 로고
    • Analysis of the altered mRNA stability (ams) gene from Escherichia coli
    • Claverie-Martin, F., Diaz-Torres, M.R., Yancey, S.D., and Kushner, S.R. (1991) Analysis of the altered mRNA stability (ams) gene from Escherichia coli. J Biol Chem 266: 2843-2851.
    • (1991) J Biol Chem , vol.266 , pp. 2843-2851
    • Claverie-Martin, F.1    Diaz-Torres, M.R.2    Yancey, S.D.3    Kushner, S.R.4
  • 14
    • 0037036432 scopus 로고    scopus 로고
    • Critical features of a conserved RNA stem-loop important for feedback regulation of RNase E synthesis
    • Diwa, A.A., and Belasco, J.G. (2002) Critical features of a conserved RNA stem-loop important for feedback regulation of RNase E synthesis. J Biol Chem 277: 20415-20422.
    • (2002) J Biol Chem , vol.277 , pp. 20415-20422
    • Diwa, A.A.1    Belasco, J.G.2
  • 15
    • 0034657405 scopus 로고    scopus 로고
    • An evolutionarily conserved RNA stem-loop functions as a sensor that directs feedback regulation of RNase E gene expression
    • Diwa, A., Bricker, A.L., Jain, C., and Belasco, J.G. (2000) An evolutionarily conserved RNA stem-loop functions as a sensor that directs feedback regulation of RNase E gene expression. Genes Dev 14: 1249-1260.
    • (2000) Genes Dev , vol.14 , pp. 1249-1260
    • Diwa, A.1    Bricker, A.L.2    Jain, C.3    Belasco, J.G.4
  • 16
    • 0028797303 scopus 로고
    • RNase E autoregulates its synthesis by controlling the degradation rate of its own mRNA in Escherichia coli: Unusual sensitivity of the rne transcript to RNase E activity
    • Jain, C., and Belasco, J.G. (1995) RNase E autoregulates its synthesis by controlling the degradation rate of its own mRNA in Escherichia coli: Unusual sensitivity of the rne transcript to RNase E activity. Genes Dev 9: 84-96.
    • (1995) Genes Dev , vol.9 , pp. 84-96
    • Jain, C.1    Belasco, J.G.2
  • 17
    • 0036231777 scopus 로고    scopus 로고
    • Consequences of RNase E scarcity in Escherichia coli
    • Jain, C., Deana, A., and Belasco, J.G. (2002) Consequences of RNase E scarcity in Escherichia coli. Mol Microbiol 43: 1053-1064.
    • (2002) Mol Microbiol , vol.43 , pp. 1053-1064
    • Jain, C.1    Deana, A.2    Belasco, J.G.3
  • 18
    • 0031015217 scopus 로고    scopus 로고
    • CspA, the major cold-shock protein of Escherichia coli, is an RNA chaperone
    • Jiang, W., Hou, Y., and Inouye, M. (1997) CspA, the major cold-shock protein of Escherichia coli, is an RNA chaperone. J Biol Chem 272: 196-202.
    • (1997) J Biol Chem , vol.272 , pp. 196-202
    • Jiang, W.1    Hou, Y.2    Inouye, M.3
  • 19
    • 0034005317 scopus 로고    scopus 로고
    • Regions of RNase E important for 5′-end-dependent RNA cleavage and autoregulated synthesis
    • Jiang, X., Diwa, A., and Belasco, J.G. (2000) Regions of RNase E important for 5′-end-dependent RNA cleavage and autoregulated synthesis. J Bacteriol 182: 2468-2475.
    • (2000) J Bacteriol , vol.182 , pp. 2468-2475
    • Jiang, X.1    Diwa, A.2    Belasco, J.G.3
  • 20
    • 15844404508 scopus 로고    scopus 로고
    • RNase E cleaves at multiple sites in bubble regions of RNA I stem loops yielding products that dissociate differentially from the enzyme
    • Kaberdin, V.R., Chao, Y.H., and Lin-Chao, S. (1996) RNase E cleaves at multiple sites in bubble regions of RNA I stem loops yielding products that dissociate differentially from the enzyme. J Biol Chem 271: 13103-13109.
    • (1996) J Biol Chem , vol.271 , pp. 13103-13109
    • Kaberdin, V.R.1    Chao, Y.H.2    Lin-Chao, S.3
  • 21
    • 0034636985 scopus 로고    scopus 로고
    • Enhanced cleavage of RNA mediated by an interaction between substrates and the arginine-rich domain of E. coli ribonuclease E
    • Kaberdin, V.R., Walsh, A.P., Jakobsen, T., McDowall, K.J., and von Gabain, A. (2000) Enhanced cleavage of RNA mediated by an interaction between substrates and the arginine-rich domain of E. coli ribonuclease E. J Mol Biol 301: 257-264.
    • (2000) J Mol Biol , vol.301 , pp. 257-264
    • Kaberdin, V.R.1    Walsh, A.P.2    Jakobsen, T.3    McDowall, K.J.4    Von Gabain, A.5
  • 22
    • 0029889965 scopus 로고    scopus 로고
    • RNase E polypeptides lacking a carboxyl-terminal half suppress a mukB mutation in Escherichia coli
    • Kido, M., Yamanaka, K., Mitani, T., Niki, H., Ogura, T., and Hiraga, S. (1996) RNase E polypeptides lacking a carboxyl-terminal half suppress a mukB mutation in Escherichia coli. J Bacteriol 178: 3917-3925.
    • (1996) J Bacteriol , vol.178 , pp. 3917-3925
    • Kido, M.1    Yamanaka, K.2    Mitani, T.3    Niki, H.4    Ogura, T.5    Hiraga, S.6
  • 23
    • 0036210631 scopus 로고    scopus 로고
    • RNase E plays an essential role in the maturation of Escherichia coli tRNA precursors
    • Li, Z., and Deutscher, M.P. (2002) RNase E plays an essential role in the maturation of Escherichia coli tRNA precursors. RNA 8: 97-109.
    • (2002) RNA , vol.8 , pp. 97-109
    • Li, Z.1    Deutscher, M.P.2
  • 24
    • 0028276973 scopus 로고
    • Effects of nucleotide sequence on the specificity of rne-dependent and RNase E-mediated cleavages of RNA I encoded by the pBR322 plasmid
    • Lin-Chao, S., Wong, T.-T., McDowall, K.J., and Cohen, S.N. (1994) Effects of nucleotide sequence on the specificity of rne-dependent and RNase E-mediated cleavages of RNA I encoded by the pBR322 plasmid. J Biol Chem 269: 10797-10803.
    • (1994) J Biol Chem , vol.269 , pp. 10797-10803
    • Lin-Chao, S.1    Wong, T.-T.2    McDowall, K.J.3    Cohen, S.N.4
  • 25
    • 0033607239 scopus 로고    scopus 로고
    • RNase E is required for the maturation of ssrA RNA and normal ssrA RNA peptide-tagging activity
    • Lin-Chao, S., Wei, C.L., and Lin, Y.T. (1999) RNase E is required for the maturation of ssrA RNA and normal ssrA RNA peptide-tagging activity. Proc Natl Acad Sci USA 96: 12406-12411.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 12406-12411
    • Lin-Chao, S.1    Wei, C.L.2    Lin, Y.T.3
  • 26
    • 0033048415 scopus 로고    scopus 로고
    • The C-terminal half of RNase E, which organizes the Escherichia coli degradosome, participates in mRNA degradation but not rRNA processing in vivo
    • Lopez, P.J., Marchand, I., Joyce, S.A., and Dreyfus, M. (1999) The C-terminal half of RNase E, which organizes the Escherichia coli degradosome, participates in mRNA degradation but not rRNA processing in vivo. Mol Microbiol 33: 188-199.
    • (1999) Mol Microbiol , vol.33 , pp. 188-199
    • Lopez, P.J.1    Marchand, I.2    Joyce, S.A.3    Dreyfus, M.4
  • 27
    • 0029962989 scopus 로고    scopus 로고
    • The N-terminal domain of the rne gene product has RNase E activity and is non-overlapping with the arginine-rich RNA-binding site
    • McDowall, K.J., and Cohen, S.N. (1996) The N-terminal domain of the rne gene product has RNase E activity and is non-overlapping with the arginine-rich RNA-binding site. J Mol Biol 255: 349-355.
    • (1996) J Mol Biol , vol.255 , pp. 349-355
    • McDowall, K.J.1    Cohen, S.N.2
  • 28
    • 0027273009 scopus 로고
    • The ams-1 and rne-3071 temperature-sensitive mutations in the ams gene are in close proximity to each other and cause substitutions within a domain that resembles a product of the Escherichia coli mre locus
    • McDowall, K.J., Hernandez, R.G., Lin-Chao, S., and Cohen, S.N. (1993) The ams-1 and rne-3071 temperature-sensitive mutations in the ams gene are in close proximity to each other and cause substitutions within a domain that resembles a product of the Escherichia coli mre locus. J Bacteriol 175: 4245-4249.
    • (1993) J Bacteriol , vol.175 , pp. 4245-4249
    • McDowall, K.J.1    Hernandez, R.G.2    Lin-Chao, S.3    Cohen, S.N.4
  • 29
    • 0028341449 scopus 로고
    • A+U content rather than a particular nucleotide order determines the specificity of RNase E cleavage
    • McDowall, K.J., Lin-Chao, S., and Cohen, S.N. (1994) A+U content rather than a particular nucleotide order determines the specificity of RNase E cleavage. J Biol Chem 269: 10790-10796.
    • (1994) J Biol Chem , vol.269 , pp. 10790-10796
    • McDowall, K.J.1    Lin-Chao, S.2    Cohen, S.N.3
  • 30
    • 0032531768 scopus 로고    scopus 로고
    • Ribonuclease E is a 5′-end-dependent endonuclease
    • Mackie, G.A. (1998) Ribonuclease E is a 5′-end-dependent endonuclease. Nature 395: 720-723.
    • (1998) Nature , vol.395 , pp. 720-723
    • Mackie, G.A.1
  • 31
    • 0029094248 scopus 로고
    • Recruiting proteins to the RNA world
    • Mattaj, I.W., and Nagai, K. (1995) Recruiting proteins to the RNA world. Nature Struct Biol 2: 518-522.
    • (1995) Nature Struct Biol , vol.2 , pp. 518-522
    • Mattaj, I.W.1    Nagai, K.2
  • 32
    • 0029100702 scopus 로고
    • A new set of useful cloning and expression vectors derived from pBlueScript
    • Mayer, M.P. (1995) A new set of useful cloning and expression vectors derived from pBlueScript. Gene 163: 41-46.
    • (1995) Gene , vol.163 , pp. 41-46
    • Mayer, M.P.1
  • 33
    • 0025906534 scopus 로고
    • Genetic studies of cleavage-initiated mRNA decay and processing of ribosomal 9S RNA show that the Escherichia coli ams and rne loci are the same
    • Melefors, Ö., and von Gabain, A. (1991) Genetic studies of cleavage-initiated mRNA decay and processing of ribosomal 9S RNA show that the Escherichia coli ams and rne loci are the same. Mol Microbiol 5: 857-864.
    • (1991) Mol Microbiol , vol.5 , pp. 857-864
    • Melefors, Ö.1    Von Gabain, A.2
  • 34
    • 0027250040 scopus 로고
    • Escherichia coli endoribonuclease RNase E: Autoregulation of expression and site-specific cleavage of mRNA
    • Mudd, E.A., and Higgins, C.F. (1993) Escherichia coli endoribonuclease RNase E: Autoregulation of expression and site-specific cleavage of mRNA. Mol Microbiol 9: 557-568.
    • (1993) Mol Microbiol , vol.9 , pp. 557-568
    • Mudd, E.A.1    Higgins, C.F.2
  • 35
    • 0025688893 scopus 로고
    • RNase E, an endoribonuclease, has a general role in the chemical decay of E. coli mRNA: Evidence that rne and ams are the same genetic locus
    • Mudd, E.A., Krisch, H.M., and Higgins, C.F. (1990) RNase E, an endoribonuclease, has a general role in the chemical decay of E. coli mRNA: Evidence that rne and ams are the same genetic locus. Mol Microbiol 4: 2127-2135.
    • (1990) Mol Microbiol , vol.4 , pp. 2127-2135
    • Mudd, E.A.1    Krisch, H.M.2    Higgins, C.F.3
  • 36
    • 0018791193 scopus 로고
    • A conditional lethal mutation in an Escherichia coli strain with a longer chemical lifetime of mRNA
    • Ono, M., and Kuwano, M. (1979) A conditional lethal mutation in an Escherichia coli strain with a longer chemical lifetime of mRNA. J Mol Biol 129: 343-357.
    • (1979) J Mol Biol , vol.129 , pp. 343-357
    • Ono, M.1    Kuwano, M.2
  • 37
    • 0036571060 scopus 로고    scopus 로고
    • Initiation of tRNA maturation by RNase E is essential for cell viability in E. coli
    • Ow, M.C., and Kushner, S.R. (2002) Initiation of tRNA maturation by RNase E is essential for cell viability in E. coli. Genes Dev 16: 1102-1115.
    • (2002) Genes Dev , vol.16 , pp. 1102-1115
    • Ow, M.C.1    Kushner, S.R.2
  • 38
    • 0033636189 scopus 로고    scopus 로고
    • Analysis of mRNA decay and rRNA processing in Escherichia coli in the absence of RNase E-based degradosome assembly
    • Ow, M.C., Liu, Q., and Kushner, S.R. (2000) Analysis of mRNA decay and rRNA processing in Escherichia coli in the absence of RNase E-based degradosome assembly. Mol Microbiol 38: 854-866.
    • (2000) Mol Microbiol , vol.38 , pp. 854-866
    • Ow, M.C.1    Liu, Q.2    Kushner, S.R.3
  • 39
    • 0032858516 scopus 로고    scopus 로고
    • Sequence-selective interactions with RNA by CspB, CspC and CspE, members of the CspA family of Escherichia coli
    • Phadtare, S., and Inouye, M. (1999) Sequence-selective interactions with RNA by CspB, CspC and CspE, members of the CspA family of Escherichia coli. Mol Microbiol 33: 1004-1014.
    • (1999) Mol Microbiol , vol.33 , pp. 1004-1014
    • Phadtare, S.1    Inouye, M.2
  • 40
    • 0029078286 scopus 로고
    • Mutational analysis of the putative nucleic acid-binding surface of the cold-shock domain, CspB, revealed an essential role of aromatic and basic residues in binding of single-stranded DNA containing the Y-box motif
    • Schroder, K., Graumann, P., Schnuchel, A., Holak, T.A., and Marahiel, M.A. (1995) Mutational analysis of the putative nucleic acid-binding surface of the cold-shock domain, CspB, revealed an essential role of aromatic and basic residues in binding of single-stranded DNA containing the Y-box motif. Mol Microbiol 16: 699-708.
    • (1995) Mol Microbiol , vol.16 , pp. 699-708
    • Schroder, K.1    Graumann, P.2    Schnuchel, A.3    Holak, T.A.4    Marahiel, M.A.5
  • 41
    • 0035168335 scopus 로고    scopus 로고
    • Autoregulation allows Escherichia coli RNase E to adjust continuously its synthesis to that of its substrates
    • Sousa, S., Marchand, I., and Dreyfus, M. (2001) Autoregulation allows Escherichia coli RNase E to adjust continuously its synthesis to that of its substrates. Mol Microbiol 42: 867-878.
    • (2001) Mol Microbiol , vol.42 , pp. 867-878
    • Sousa, S.1    Marchand, I.2    Dreyfus, M.3
  • 42
    • 0025881986 scopus 로고
    • The gene specifying RNase E (rne) and a gene affecting mRNA stability (ams) are the same gene
    • Taraseviciene, L., Miczak, A., and Apirion, D. (1991) The gene specifying RNase E (rne) and a gene affecting mRNA stability (ams) are the same gene. Mol Microbiol 5: 851-855.
    • (1991) Mol Microbiol , vol.5 , pp. 851-855
    • Taraseviciene, L.1    Miczak, A.2    Apirion, D.3
  • 43
    • 0034708447 scopus 로고    scopus 로고
    • The CafA protein required for the 5′-maturation of 16S rRNA is a 5′-end-dependent ribonuclease that has context-dependent broad sequence specificity
    • Tock, M.R., Walsh, A.P., Carroll, G., and McDowall, K.J. (2000) The CafA protein required for the 5′-maturation of 16S rRNA is a 5′-end-dependent ribonuclease that has context-dependent broad sequence specificity. J Biol Chem 275: 8726-8732.
    • (2000) J Biol Chem , vol.275 , pp. 8726-8732
    • Tock, M.R.1    Walsh, A.P.2    Carroll, G.3    McDowall, K.J.4
  • 44
    • 0022336784 scopus 로고
    • Processing enzyme ribonuclease E specifically cleaves RNA I, an inhibitor of primer formation in plasmid DNA synthesis
    • Tomcsanyi, T., and Apirion, D. (1985) Processing enzyme ribonuclease E specifically cleaves RNA I, an inhibitor of primer formation in plasmid DNA synthesis. J Mol Biol 185: 713-720.
    • (1985) J Mol Biol , vol.185 , pp. 713-720
    • Tomcsanyi, T.1    Apirion, D.2
  • 45
    • 3543037550 scopus 로고    scopus 로고
    • Ribonuclease E organizes the protein interactions in the Escherichia coli RNA degradosome
    • Vanzo, N.F., Li, Y.-S., Py, B., Blum, E., Higgins, C.F., Raynal, L.C., et al. (1998) Ribonuclease E organizes the protein interactions in the Escherichia coli RNA degradosome. Genes Dev 12: 2770-2781.
    • (1998) Genes Dev , vol.12 , pp. 2770-2781
    • Vanzo, N.F.1    Li, Y.-S.2    Py, B.3    Blum, E.4    Higgins, C.F.5    Raynal, L.C.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.