메뉴 건너뛰기




Volumn 9, Issue 4, 2002, Pages 655-669

Identifying and quantifying sources of variation in microarray data using high-density cDNA membrane arrays

Author keywords

Akaike Information Criterion; Analysis of variance; ANOVA; cDNA microarray; Differential gene expression; Replicated microarray experiments

Indexed keywords

ANALYSIS OF VARIANCE; ARTICLE; BURKITT LYMPHOMA; CLUSTER ANALYSIS; CONTROLLED STUDY; DEVICE; DNA MICROARRAY; GENE TARGETING; GENETIC ALGORITHM; GENETIC VARIABILITY; HUMAN; HUMAN CELL; IMAGE ANALYSIS; LYMPHOMA CELL LINE; MEMBRANE; MULTIVARIATE ANALYSIS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN TARGETING; QUALITATIVE ANALYSIS; RADIATION; RNA EXTRACTION;

EID: 0036399459     PISSN: 10665277     EISSN: None     Source Type: Journal    
DOI: 10.1089/106652702760277372     Document Type: Article
Times cited : (35)

References (37)
  • 2
    • 0033536012 scopus 로고    scopus 로고
    • Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays
    • Alon, U., Barkai, N., Notterman, D.A., Gish, K., Ybarra, S., Mack, D., and Levine, A.J. 1999. Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays. Proc. Natl. Acad. Sci. USA 96, 6745-6750.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 6745-6750
    • Alon, U.1    Barkai, N.2    Notterman, D.A.3    Gish, K.4    Ybarra, S.5    Mack, D.6    Levine, A.J.7
  • 3
    • 0034703060 scopus 로고    scopus 로고
    • Global gene expression profiling in Esherichia coli K12: The effects of integration host factor
    • Arfin, S.M., Long, A.D., Ito, E.T., Tolleri, L., Riehle, M.M., Paegle, E.S., and Hatfield, G.W. 2000. Global gene expression profiling in Esherichia coli K12: The effects of integration host factor. J. Biol. Chem. 275, 29672-29684.
    • (2000) J. Biol. Chem , vol.275 , pp. 29672-29684
    • Arfin, S.M.1    Long, A.D.2    Ito, E.T.3    Tolleri, L.4    Riehle, M.M.5    Paegle, E.S.6    Hatfield, G.W.7
  • 5
    • 0034948896 scopus 로고    scopus 로고
    • A Bayesian framework for the analysis of microarray expression data: Regularized t-test and statistical inferences of gene changes
    • Baldi, P., and Long, A.D. 2001. A Bayesian framework for the analysis of microarray expression data: Regularized t-test and statistical inferences of gene changes. Bioinformatics 17, 509-519.
    • (2001) Bioinformatics , vol.17 , pp. 509-519
    • Baldi, P.1    Long, A.D.2
  • 9
    • 0034714421 scopus 로고    scopus 로고
    • Gene expression data analysis
    • Brazma, A., and Vilo, J. 2000. Gene expression data analysis. FEBS Lett. 480, 17-24.
    • (2000) FEBS Lett , vol.480 , pp. 17-24
    • Brazma, A.1    Vilo, J.2
  • 11
    • 0031246430 scopus 로고    scopus 로고
    • Ratio-based decisions and the quantitative analysis of cDNA microarray images
    • Chen, Y., Dougherty, E.R., and Bittner, M.R. 1997. Ratio-based decisions and the quantitative analysis of cDNA microarray images. J. Biomed. Opt. 2, 364-374.
    • (1997) J. Biomed. Opt , vol.2 , pp. 364-374
    • Chen, Y.1    Dougherty, E.R.2    Bittner, M.R.3
  • 12
    • 0032837252 scopus 로고    scopus 로고
    • Computational methods for the identification of differential and coordinated gene expression
    • Claverie, J.M. 1999. Computational methods for the identification of differential and coordinated gene expression. Human Mol. Genet. 8, 1821-1832.
    • (1999) Human Mol. Genet , vol.8 , pp. 1821-1832
    • Claverie, J.M.1
  • 14
    • 85007266222 scopus 로고    scopus 로고
    • Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments
    • Dudoit, S., Yang, Y.H., Callow, M.J., and Speed, T.P. Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments. Statistica Sinica. In press.
    • Statistica Sinica
    • Dudoit, S.1    Yang, Y.H.2    Callow, M.J.3    Speed, T.P.4
  • 15
    • 0029995095 scopus 로고    scopus 로고
    • From hybridization image to numerical values: A practical, high throughput quantification system for high density filter hybridizations
    • Granjeaud, S., Nguyen, C., Rocha, D., Luton, R., and Jordan, B.R. 1996. From hybridization image to numerical values: A practical, high throughput quantification system for high density filter hybridizations. Genet. Anal. 12, 151-162.
    • (1996) Genet. Anal , vol.12 , pp. 151-162
    • Granjeaud, S.1    Nguyen, C.2    Rocha, D.3    Luton, R.4    Jordan, B.R.5
  • 21
    • 0000884487 scopus 로고    scopus 로고
    • Experimental design for gene expression microarrays
    • Kerr, M.K., and Churchill, G.A. 2001. Experimental design for gene expression microarrays. Biostatistics 2, 183-201.
    • (2001) Biostatistics , vol.2 , pp. 183-201
    • Kerr, M.K.1    Churchill, G.A.2
  • 22
    • 0034927555 scopus 로고    scopus 로고
    • Analysis of variance for gene expression microarray data
    • Kerr, M.K., Martin, M., and Churchill, G.A. 2000. Analysis of variance for gene expression microarray data. J. Comput. Biol. 7, 819-837.
    • (2000) J. Comput. Biol , vol.7 , pp. 819-837
    • Kerr, M.K.1    Martin, M.2    Churchill, G.A.3
  • 24
    • 0033610079 scopus 로고    scopus 로고
    • Gene expression profile of aging and its retardation by caloric restriction
    • Lee, C.K., Klopp, R.G., Weindruch, R., and Prolla, T.A. 1999. Gene expression profile of aging and its retardation by caloric restriction. Science 285, 1390-1393.
    • (1999) Science , vol.285 , pp. 1390-1393
    • Lee, C.K.1    Klopp, R.G.2    Weindruch, R.3    Prolla, T.A.4
  • 25
    • 0034730124 scopus 로고    scopus 로고
    • Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations
    • Lee, M.L., Kuo, F.C., Whitmore, G.A., and Sklar, J. 2000. Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations. Proc. Natl. Acad. Sci. USA 97, 9834-9839.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 9834-9839
    • Lee, M.L.1    Kuo, F.C.2    Whitmore, G.A.3    Sklar, J.4
  • 26
    • 0035827588 scopus 로고    scopus 로고
    • Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framework. Analysis of global gene expression in Escherichia coli K12
    • Long, A.D., Mangalam, H.J., Chan, B.Y., Tolleri, L., Hatfield, G.W., and Baldi, P. 2001. Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framework. Analysis of global gene expression in Escherichia coli K12. J. Biol. Chem. 276, 19937-19944.
    • (2001) J. Biol. Chem , vol.276 , pp. 19937-19944
    • Long, A.D.1    Mangalam, H.J.2    Chan, B.Y.3    Tolleri, L.4    Hatfield, G.W.5    Baldi, P.6
  • 28
    • 0034923013 scopus 로고    scopus 로고
    • On differential variability of expression ratios: Improving statistical inference about gene expression changes from microarray data
    • Newton, M.A., Kendziorski, C.M., Richmond, C.S., Blattner, F.R., and Tsui, K.W. 2001. On differential variability of expression ratios: Improving statistical inference about gene expression changes from microarray data. J. Comp. Biol. 8, 37-52.
    • (2001) J. Comp. Biol , vol.8 , pp. 37-52
    • Newton, M.A.1    Kendziorski, C.M.2    Richmond, C.S.3    Blattner, F.R.4    Tsui, K.W.5
  • 33
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • Tusher, V.G., Tibshirani, R., and Chu, G. 2001. Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl. Acad. Sci USA 98, 5116-5121.
    • (2001) Proc. Natl. Acad. Sci USA , vol.98 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3
  • 35
    • 0034717076 scopus 로고    scopus 로고
    • Gene expression profiling in human peripheral blood mononuclear cells using highdensity filter-based cDNA microarrays
    • Walker, J., and Rigley, K. 2000. Gene expression profiling in human peripheral blood mononuclear cells using highdensity filter-based cDNA microarrays. J. Immunol. Methods 239, 167-179.
    • (2000) J. Immunol. Methods , vol.239 , pp. 167-179
    • Walker, J.1    Rigley, K.2
  • 37
    • 0003576793 scopus 로고    scopus 로고
    • Normalization for cDNA microarray data
    • Bittner, M.L., Chen, Y., Dorsel, A.N., and Dougherty, E.R., eds., SPIE, Bellingham, WA
    • Yang, Y.-H., Dudoit, S., Luu, P., and Speed, T.P. 2001. Normalization for cDNA microarray data. In Bittner, M.L., Chen, Y., Dorsel, A.N., and Dougherty, E.R., eds., Microarrays: Optical Technologies and Informatics, SPIE, Bellingham, WA.
    • (2001) Microarrays: Optical Technologies and Informatics
    • Yang, Y.-H.1    Dudoit, S.2    Luu, P.3    Speed, T.P.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.