Solution conformations of unmodified and A37N6-dimethylallyl modified anticodon stem-loops of Escherichia coli tRNAphe

Journal of Molecular Biology

Volumn 319, Issue 5, 2002, Pages 1015-1034

  Cabello Villegas, Javier ^a   Winkler, Malcolm E ^b   Nikonowicz, Edward P ^a  

^a RICE UNIVERSITY   (United States)

^b UNIVERSITY OF TEXAS MEDICAL SCHOOL   (United States)

Author keywords

Frameshift; Prenylation; RNA dynamics; Translation defect; U turn

Indexed keywords

PYRIMIDINE; TRANSFER RNA;

ANTICODON; ARTICLE; BASE PAIRING; CATALYST; CODON; CONFORMATION; CONTROLLED STUDY; CRYSTAL STRUCTURE; ESCHERICHIA COLI; MOLECULE; NONHUMAN; PRENYLATION; PRIORITY JOURNAL; PROTEIN SYNTHESIS; RNA SEQUENCE; THERMOSTABILITY;

ESCHERICHIA COLI;

EID: 0036303671     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0022-2836(02)00382-0     Document Type: Article

References (62)

1. Biosynthesis and function of modified nucleosides
2. Mechanisms of modifying enzymes
3. Genetics and regulation of tRNA and rRNA modification
4. Biophysical and conformational properties of modified nucleosides in RNA
5. 2+ binding and coupled conformational transitions in DNA analogs
6. 2+ in RNA structure and function
7. Modified nucleosides at positions 34 and 37 of tRNAs and their predicted coding capacities
8. Sequence specificity of tRNA-modifying enzymes: An analysis of 258 tRNA sequences
9. Escherichia coli dimethylallyl diphosphate:tRNA dimethylallyl-transferase: A binding mechanism for recombinant enzyme
10. 2-isopentenyl transferase: Dependence on the anticodon arm structure
11. Compilation of tRNA sequences and sequences of tRNA genes
12. Effects of miaA on translation and growth rates
13. 6-(4-hydroxyisopentenyl)adenosine distinguish between bases 3′ of the codon
14. Role of tRNA modification in translational fidelity
15. 37 in tRNA, mutation in rpsD(S4) or streptomycin
16. Influence of modification next to the anticodon in tRNA on codon context sensitivity of translational suppression and accuracy
17. 2-isopentenyl)-adenosine tRNA modification, and spontaneous mutagenesis in Escherichia coli K-12
18. The role of 2-methylthio-N6-isopentenyladenosine in readthrough and suppression of nonsense codons in Eshcerichia coli
19. In vitro analysis of translational rate and accuracy with an unmodified tRNA
20. Three-dimensional tertiary structure of yeast phenylalanine transfer RNA
21. Structure of yeast phenylalanine tRNA at 3 Å resolution
22. The effect of point mutations affecting Escherichia coli tryptophan tRNA on anticodon-anticodon interactions and on UGA suppression
23. Escherichia coli dimethylallyl diphosphate:tRNA dimethylallyl-transferase: Essential elements for recognition of tRNA substrates within the anticodon stem-loop
24. Phe
25. 15N labeled nucleic acids
26. Multidimensional heteronuclear NMR experiments for structure determination of isotopically labeled RNA
27. 15N HSQC experiments
28. Detection of N - H···N hydrogen bonding in RNA via scalar couplingsin the absence of observable imino proton resonances
29. Phosphorylation of isoprenoid alcohols
30. NMR investigation of RNA structure
31. NMR structure and dynamics of an RNA motif common to the spliceosome branch-point helix and the RNA-binding site for GA coat protein
32. Stabilization of RNA structure by Mg ions: Specific and non-specific effects
33. Structure of the P1 helix from group I self-splicing introns
34. 1H-n.m.r. study
35. On the conformation of the anticodon loops of initiator and elongator methionine tRNAs
36. +-C base-pair and by pseudouridine
37. Anticodon-anticodon interaction induces conformational changes in tRNA: Yeast tRNAAsp, a model for tRNA-mRNA recognition
38. Cys-EF-Tu-GDPNP reveals general and specific features in the ternary complex in tRNA
39. Lys,3 shows a canonical anticodon loop
40. Lys,3 includes disruption of intraloop hydrogen bonding by the naturally occurring amino acid modification t6A
41. Role modifications in tyrosine transfer RNA: A modified base affecting ribosome binding
42. Synthesis and function of isopentenyl adenosine derivatives in tRNA
43. 6A) present next to the anticodon contributes to the decoding efficiency of the tRNA
44. The evolving tRNA molecule
45. Temperature jump relaxation studies on the interactions between transfer RNAs with complementary anticodons. The effect of modified bases adjacent to the anticodon triplet
46. Modulation role of modified nucleotides in RNA loop-loop interaction
47. The nucleotide in position 32 of the tRNA anticodon loop determines ability of anticodon UCC to discriminate among glycine codons
48. Glycine codon discrimination and the nucleotide in position 32 of the anticodon loop
49. tRNA imbalance promotes - 1 Frameshifting via near-cognate decoding
50. Pro(GGG) of Salmonella typhimurium induce +1 frameshifting at the peptidyl-site
51. Functional effect of deletion and mutation of the Escherichia coli ribosomal RNA and tRNA pseudouridine synthase RluA
52. Regulation of substrate recognition by the MiaA tRNA prenyltransferase modification enzyme of Escherichia coli K-12
53. Cloning and Expression of the Gene for Bacteriophage T7 RNA Polymerase
54. 15N labelled RNAs for heteronuclear multidimensional NMR studies
55. Preparation of isotopically labeled ribonucleotides for multidimensional NMR spectroscopy of RNA
56. 13C-labeled ribozyme
57. 31P J coupling constants in isotopically labeled RNA
58. 13C alpha carbons
59. Conformational analysis of nucleic acids. Determination of backbone geometry of single-helical RNA and DNA in aqueous solution