Detection of N-H ··· N hydrogen bonding in RNA via scalar couplings in the absence of observable imino proton resonances

Nucleic Acids Research

Volumn 28, Issue 7, 2000, Pages 1585-1593

  Hennig, Mirko ^a   Williamson, James R ^a  

^a SCRIPPS RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

IMINO ACID; PROTON; RNA;

ARTICLE; HUMAN IMMUNODEFICIENCY VIRUS 2; HYDROGEN BOND; NUCLEAR MAGNETIC RESONANCE IMAGING; PRIORITY JOURNAL; RNA ANALYSIS; RNA STRUCTURE;

BASE PAIRING; BASE SEQUENCE; DEUTERIUM; HIV LONG TERMINAL REPEAT; HIV-2; HYDROGEN BONDING; IMINES; MAGNETIC RESONANCE SPECTROSCOPY; NITROGEN; NUCLEIC ACID CONFORMATION; RNA STABILITY; RNA, VIRAL;

HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 2;

EID: 0034176994     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (42)

1. Dingley,A.J. and Grzesiek,S. (1998) J. Am. Chem. Soc., 120, 8293-8297.
2. Pervushin,K., Ono,A., Fernandez,C., Szyperski,T., Kainosho,M. and Wuthrich,K. (1998) Proc. Natl Acad. Sci. USA, 95, 14147-14151.
3. Hennig,M. and Geierstanger,B.H. (1999) J. Am. Chem. Soc., 121, 5123-5126.
4. Majumdar,A., Kettani,A. and Skripkin,E. (1999) J. Biomol. NMR, 14, 67-70.
5. Benedict,H., Limbach,H.-H., Wehlan,M., Fehlhammer,W.-P., Golubev,N.S. and Janoschek,R. (1998) J. Am. Chem. Soc., 120, 2939-2950.
6. Dingley,A.J., Masse,J.E., Peterson,R.D., Barfield,M., Feigon,J. and Grzesiek,S. (1999) J. Am. Chem. Soc., 121, 6019-6027.
7. Scheurer,C. and Brueschweiler,R. (1999) J. Am. Chem. Soc., 121, 8661-8662.
8. Wohnert,J., Dingley,A.J., Stoldt,M., Gorlach,M., Grzesiek,S. and Brown,L.R. (1999) Nucleic Acids Res., 27, 3104-3110.
9. Churcher,M.J., Lamont,C., Hamy,F., Dingwall,C., Green,S.M., Lowe,A.D., Butler,J.G., Gait,M.J. and Karn,J. (1993) J. Mol. Biol., 230, 90-110.
10. Long,K.S. and Crothers,D.M. (1995) Biochemistry, 34, 8885-8895.
11. Tao,J. and Frankel,A.D. (1992) Proc. Natl Acad. Sci. USA, 89, 2723-2726.
12. Tao,J. and Frankel,A.D. (1993) Proc. Natl Acad. Sci. USA, 90, 1571-1575.
13. Puglisi,J.D., Tan,R., Calnan,B.J., Frankel,A.D. and Williamson,J.R. (1992) Science, 257, 76-80.
14. Puglisi,J.D., Chen,L., Frankel,A.D. and Williamson,J.R. (1993) Proc. Natl Acad. Sci. USA, 90, 3680-3684.
15. Brodsky,A.S., Erlacher,H.A. and Williamson,J.R. (1998) Nucleic Acids Res., 26, 1991-1995.
16. Weeks,K.M. and Crothers,D.M. (1991) Cell, 66, 577-588.
17. Hamy,F., Asseline,U., Grasby,J., Iwai,S., Pritchard,C., Slim.G., Butler,P.J., Karn,J. and Gait,M.J. (1993) J. Mol. Biol., 230, 111-123.
18. Tao,J., Chen,L. and Frankel,A.D. (1997) Biochemistry, 36, 3491-3495.
19. Aboul-ela,F., Karn,J. and Varani,G. (1995) J. Mol. Biol., 253, 313-332.
20. Varani,G., Aboul-ela,F. and Allain,F.H.-T. (1996) Prog. NMR Spectrosc., 29, 51-127.
21. Brodsky,A.S. and Williamson,J.R. (1997) J. Mol. Biol., 267, 624-639.
22. Long,K.S. and Crothers,D.M. (1999) Biochemistry, 38, 10059-10069.
23. Michnicka,M.J., Harper,J.W. and King,G.C. (1993) Biochemistry, 32, 395-400.
24. Hall,K.B. (1995) Methods Enzymology, 261, 542-559.
25. Delaglio,F., Grzesiek,S., Vuister,G.W., Zhu,G., Pfeifer,J. and Bax,A. (1995) J. Biomol. NMR, 6, 277-293.
26. Garrett,D.S., Powers,R., Gronenborn,A.M. and Clore,G.M. (1991) J. Magn. Reson., 95, 214-220.
27. Wishart,D.S., Bigam,C.G., Yao,J., Abildgaard,F., Dyson,H.J., Oldfield,E., Markley,J.L. and Sykes,B.D. (1995)J. Biomol. NMR, 6, 135-140.
28. London,R.E. (1980) J. Magn. Reson., 86, 410-415.
29. Sklenar,V., Peterson,R.D., Rejante,M.R. and Feigon,J. (1994) J. Biomol. NMR, 4, 117-122.
30. Bax,A., Vuister,G.W., Grzesiek,S., Delaglio,F., Wang,A.C., Tschudin,R. and Zhu,G. (1994) Methods Enzymology, 239, 79-105.
31. Rexroth,A., Schmidt,P., Szalma,S., Geppert,T., Schwalbe,H. and Griesinger,C. (1995) J. Am. Chem. Soc., 117, 10389-10390.
32. Giessner-Prettre,C. and Pullman,B. (1987) Q. Rev. Biophys., 20, 113-172.
33. Hansen,P.E. (1988) Prog. NMR Spectrosc., 20, 207-255.
34. James,T.L., James,J.L. and Lapidot,A. (1981) J. Am. Chem. Soc., 103, 6748-6750.
35. Buchner,P., Maurer,W. and Ruterjans,H. (1978) J. Magn. Reson., 29, 45-63.
36. Szewczak,A.A., Ortoleva-Donnelly,L., Zivarts,M.V., Oyelere,A.K., Kazantsev,A.V. and Strobel,S.A. (1999) Proc. Natl Acad. Sci. USA, 96, 11183-11188.
37. Ye,X., Gorin,A., Ellington,A.D. and Patel,D.J. (1996) Nature Struct. Biol., 3, 1026-1031
38. Ye,X., Kumar,R.A. and Patel,D.J. (1995) Chem. Biol., 2, 827-840.
39. Hamy,F., Felder,E.R., Heizmann,G., Lazdins,J., Aboul-ela,F., Varani,G., Karn,J. and Klimkait,T. (1997) Proc. Natl Acad. Sci. USA, 94, 3548-3553.
40. Shaka,A.J., Barker,P.B. and Freeman,R. (1985) J. Magn. Reson., 64, 547-552.
41. Marion,D., Ikura,M., Tschudin,R. and Bax,A. (1989) J. Magn. Reson., 85, 393-399.
42. Piotto,M., Saudek,V. and Sklenar,V. (1992) J. Biomol. NMR, 2, 661-665.