The crystal structure of HIV reverse-transcription primer tRNA(Lys,3) shows a canonical anticodon loop

RNA

Volumn 6, Issue 10, 2000, Pages 1347-1355

  Benas P ^a   Bec, G ^a   Keith, G ^a   Marquet, R ^a   Ehresmann, C ^a   Ehresmann, B ^a   Dumas, P ^a  

^a CNRS   (France)

Author keywords

Anticodon; HIV; Modified bases; Reverse transcription primer; tRNA

Indexed keywords

ADENOSINE DERIVATIVE; DIMER; THIOURIDINE; TRANSFER RNA;

ANTICODON; ARTICLE; CRYSTAL STRUCTURE; HUMAN IMMUNODEFICIENCY VIRUS; NONHUMAN; NUCLEAR MAGNETIC RESONANCE; PRIORITY JOURNAL; REVERSE TRANSCRIPTION;

ANIMALS; ANTICODON; BASE SEQUENCE; CATTLE; CHICKENS; CRYSTALLOGRAPHY, X-RAY; HIV-1; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; NUCLEIC ACID CONFORMATION; RABBITS; RNA; RNA, TRANSFER, LYS;

HUMAN IMMUNODEFICIENCY VIRUS; RNA VIRUSES;

EID: 0033744175     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1017/S1355838200000911     Document Type: Article

References (47)

1. Unconventional structure of tRNA(Lys)SUU anticodon explains tRNA's role in bacterial and mammalian ribosomal frameshifting and primer selection by HIV-1
2. tRNA/Aminoacyl-tRNA synthetase interactions
3. Single atom modification (O → S) of tRNA confers ribosome binding
4. Singly and bifurcated hydrogen-bonded base-pairs in tRNA anticodon hairpins and ribozymes
5. The free R value: A novel statistical quantity for assessing the accuracy of crystal structures
6. Crystallography and NMR system: A new software suite for macromolecular structure determination
7. X-ray crystal structures of 70S ribosome functional complexes
8. The aspartic acid tRNA system: Recognition by a Class II aminoacyl-tRNA synthetase
9. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
10. The ternary complex of EF-Tu and its role in protein biosynthesis
11. Primary, secondary and tertiary structures of tRNAs
12. Detection and treatment of twinning: An improvement and new results
13. +-C base-pair and by pseudouridine
14. Purification of tRNATrp, tRNAVal, and partial purification of tRNAlle and tRNAfMet from beef liver
15. On the physical basis for ambiguity in genetic coding interactions
16. Modulatory role of modified nucleotides in RNA loop-loop interaction
17. Effect of uridine dethiolation in the anticodon triplet of tRNA(Glu) on its association with tRNA(Phe)
18. Initiation of reverse transcription of HIV-1: Secondary structure of the HIV-1 RNA/tRNA(Lys,3) (template/primer)
19. Specific initiation and switch to elongation of human immunodeficiency virus type 1 reverse transcription require the post-transcriptional modifications of primer tRNA(Lys,3)
20. Modified nucleotides of tRNA(3Lys) modulate primer/template loop-loop interaction in the initiation complex of HIV-1 reverse transcription
21. Structural basis for the specificity of the initiation of HIV-1 reverse transcription
22. Crystallographic refinement of yeast phenylalanine transfer RNA at 2.5 Å resolution
23. Improved methods for the building of protein models in electron density maps and the location of errors in these models
24. Primary structure of three tRNAs from brewer's yeast: tRNA(Pro,2), tRNA(His,1) and tRNA(His,2)
25. Three-dimensional structure of yeast phenylalanine transfer RNA: Folding of the polynucleotide chain
26. Synthesis and studies on the effect of 2-thiouridine and 4-thiouridine on sugar conformation and RNA duplex stability
27. tRNAs as primer of reverse transcriptases
28. Anticodon-anticodon interaction induces conformational changes in tRNA: Yeast tRNAAsp, a model for tRNA-mRNA recognition
29. AMoRe: An automated package for molecular replacement
30. Conformation of N-(purin-6ylcarbamoyl) glycine, a hypermodified base in tRNA
31. Modified nucleosides and conformation of anticodon loops: Crystal structure of t6A and g6A
32. HIV-1 A-rich RNA loop mimics the tRNA anticodon structure
33. Structural domains of transfer RNA molecules
34. Nucleotide sequence of three isoaccepting lysine tRNAs from rabbit liver and SV40-transformed mouse fibroblasts
35. Complete nucleotide sequence of the AIDS virus, HTLV-III
36. Structure of a triple helical DNA with a triplex-duplex junction
37. Structure of yeast phenylalanine tRNA at 3 Å resolution
38. Recognition in the Glutamine tRNA system: From structure to function
39. Visualization of elongation factor-Tu on the Escherichia coli ribosome
40. Sequence requirements for efficient translational frameshifting in the Escherichia coli dnaX gene and the role of an unstable interaction between tRNA(Lys) and an AAG lysine codon
41. Unusual anticodon loop structure found in E. coli lysine tRNA
42. CD and NMR studies on the conformational thermostability of 2-thioribothymidine found in the TψC loop of thermophile tRNA
43. Crystallographic refinement of yeast aspartic acid transfer RNA
44. Detecting and overcoming crystal twinning
45. Molecular mechanism of codon recognition by tRNA species with modified uridine in the first position of the anticodon
46. 1H NMR studies on the conformational characteristics of 2-thiopyrimidine nucleotides found in transfer RNAs