Lessons learned from the core RNA promoters of Brome mosaic virus and Cucumber mosaic virus

Molecular Plant Pathology

Volumn 3, Issue 1, 2002, Pages 53-59

  Kao, C Cheng ^a  

^a INDIANA UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BROME MOSAIC VIRUS; BROMUS; CUCUMBER MOSAIC VIRUS; CUCUMIS SATIVUS;

EID: 0036178425     PISSN: 14646722     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1464-6722.2001.00090.x     Document Type: Article

References (52)

1. Subgenomic RNA promoters dictate the mode of recognition by bromoviral RNA-dependent RNA polymerases
2. Minimal templates directing accurate initiation of subgenomic RNA synthesis in vitro by the brome mosaic virus RNA-dependent RNA polymerase
3. Mechanistic analysis of RNA synthesis by RNA-dependent RNA polymerase from two promoters reveals similarities to DNA-dependent RNA polymerase
4. Mutational analysis of cis-acting sequences and gene function in RNA3 of cucumber mosaic virus
5. Comparison of the replication of positive-strand RNA viruses of plants and animals
6. A mechanism for initiating RNA-dependent RNA polymerization
7. A minimal RNA promoter for minus-strand RNA synthesis by the brome mosaic virus polymerase complex
8. Cis-acting sequences for minus-strand RNA synthesis in plant-infecting RNA viruses
9. Efficient and specific initiation of subgenomic RNA synthesis by the cucumber mosaic virus replicase in vitro requires an upstream RNA stem-loop
10. Brome mosaic virus defective RNAs generated during infection of barley plants
11. In vitro transcription by the turnip yellow mosaic virus RNA polymerase: A comparison with the alfalfa mosaic virus and brome mosaic virus replicases
12. Mutational analysis of the sequence and structural requirements in brome mosaic virus RNA for minus-strand promoter activity
13. Mutational analysis of the tRNA mimicry of brome mosaic virus RNA
14. Non-canonical substrates of aminoacyl-tRNA synthetases: The tRNA-like structure of brome mosaic virus genomic RNA
15. Intercistronic as well as terminal sequences are required for efficient amplification of brome mosaic virus RNA3
16. Nucleotide sequence analysis of six satellite RNAs of Cucumber Mosaic Virus: Primary sequence and secondary structure alternations do not correlate with differences in pathogenicity
17. Interplay of tRNA-like structures from plant viral RNAs with partners of the translation and replication machineries
18. A conserved hairpin structure in alfamovirus and bromovirus subgenomic promoters is required for efficient RNA synthesis in vitro
19. Improved predictions of secondary structures for RNA
20. A core promoter hairpin is essential for subgenomic RNA synthesis in alfalfa mosaic alfamovirus and is conserved in other Bromoviridae
21. De novo initiation of viral RNA-dependent RNA synthesis. Minireview
22. Brome mosaic virus, good for a virologist's basic needs
23. A mutant viral RNA promoter with an altered conformation retains efficient recognition by a viral RNA replicase through a solution-exposed adenine
24. RNA motifs that determine specificity between a viral replicase and its promoter
25. Structural and thermodynamic studies of mutant RNA motifs that impair the specificity between a viral replicase and its promoter
26. The bovine viral diarrhea virus RNA-dependent RNA polymerase recognizes different nucleotide moieties during de novo initiation and elongation of RNA synthesis
27. Viral RNA-dependent RNA polymerase has terminal transferase activity: Implications for viral RNA synthesis
28. Cellular factors in the transcription and replication of viral RNA genomes: A parallel to DNA-dependent RNA transcription
29. Mutational analysis of the core and modulator sequences of the BMV RNA3 subgenomic promoter
30. Evidence implicating a tRNA heritage for the promoters of (+) strand RNA synthesis in brome mosaic virus and related viruses. The evolution of catalytic function
31. Minus-strand initiation by brome mosaic virus replicase within the 3′ tRNA-like structure of native and modified RNA templates
32. Cucumber mosaic virus
33. The requirement for a 5′ stem-loop structure in brome mosaic virus replication supports a new model for viral positive-strand RNA initiation
34. Recombination and polymerase error facilitate restoration of infectivity in brome mosaic virus
35. Cucumber mosaic virus, a model for RNA virus evolution
36. Sequence-specific recognition of an RNA promoter by a viral RNA polymerase
37. Identification of the base moieties in an RNA promoter specifically recognized by a viral RNA-dependent RNA polymerase
38. Use of RNA, DNA and chimeric templates revealed that a viral RNA-dependent RNA polymerase can bridge the gap from the RNA to the DNA world
39. Specific site selection in RNA resulting from a combination of nonspecific secondary structure and CCR-boxes: Initiation of minus-strand synthesis by turnip yellow mosaic virus RNA-dependent RNA polymerase
40. Recognition of the core RNA promoter for minus-strand RNA synthesis by the brome mosaic virus and cucumber mosaic virus RNA replicases
41. Core promoter for initiation of cucumber mosaic virus subgenomic RNA4A
42. Initiation of genomic (+)-strand RNA synthesis from DNA and RNA templates by a viral RNA-dependent RNA polymerase
43. Initiation of brome mosaic virus genomic RNA synthesis requires a correctly positioned box B
44. RNA sequence and structural determinants for the recognition and efficiency of RNA synthesis by a viral RNA replicase
45. Spatial requirements for promoter recognition by a viral RNA-dependent RNA polymerase
46. A brome mosaic virus intergenic RNA3 replication signal functions with viral replication protein 1a to dramatically stabilize RNA in vivo
47. Initiation of (-)-strand RNA synthesis catalyzed by the brome mosaic virus RNA-dependent RNA polymerase: Synthesis of oligonucleotides
48. RNA synthesis by the brome mosaic virus RNA-dependent RNA polymerase: Transition from initiation to elongation
49. Characterization of RNA products associated with or aborted by a viral RNA-dependent RNA polymerase
50. Nucleotides near the 5′-terminus of the template contributes to the completion of RNA synthesis by viral RNA replicases
51. Induced fit in RNA-protein interaction
52. Requirement of 3′-terminal guanosine in (-)-strand RNA for in vitro replication of cucumber mosaic virus satellite RNA by viral RNA-dependent RNA polymerase