A core promoter hairpin is essential for subgenomic RNA synthesis in alfalfa mosaic alfamovirus and is conserved in other Bromoviridae

Virus Genes

Volumn 17, Issue 3, 1998, Pages 233-242

  Jaspars, E M J ^a  

^a LEIDEN UNIVERSITY   (Netherlands)

Author keywords

Alfamovirus; Bromoviridae; Core promoter hairpin; Genome activation; Ilarvirus; RNA 4 synthesis

Indexed keywords

COAT PROTEIN; VIRUS RNA;

ALFALFA MOSAIC VIRUS; ALFAMOVIRUS; ARTICLE; GENETIC CONSERVATION; MOLECULAR STABILITY; MOSAIC VIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; PROMOTER REGION; RNA STRUCTURE; RNA SYNTHESIS;

ALFAMOVIRUS; BASE SEQUENCE; BROMOVIRIDAE; CAPSID; DNA-DIRECTED RNA POLYMERASES; MEDICAGO SATIVA; MUTATION; NUCLEIC ACID CONFORMATION; PROMOTER REGIONS (GENETICS); RNA, VIRAL; SEQUENCE HOMOLOGY, NUCLEIC ACID;

EID: 0032408320     PISSN: 09208569     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1008065704102     Document Type: Article

References (62)

1. Rybicki E.P., in Murphy F.A., Fauquet C.M., Bishop D.H.L., Ghabrial S.A., Jarvis A.W., Martelli G.P., Mayo M.A., and Summers M.D. (eds.). Virus taxonomy. Classification and nomenclature of viruses. Sixth report of the international committee on taxonomy of viruses. Springer, Wien, New York, 1995, pp. 450-457.
2. Miller W.A., Dreher T.W., and Hall T.C., Nature 313, 68-70, 1985.
3. Marsh L.E., Dreher T.W., and Hall T.C., Nucleic Acids Res 16, 981-995, 1988.
4. Adkins S., Siegel R.W., Sun J.-H., and Kao C.C., RNA 3, 634-647, 1997.
5. Van der Kuyl A.C., Langereis K., Houwing C.J., Jaspars E.M.J., and Bol J.F., Virology 176, 346-354, 1990.
6. French R., Janda M., and Ahlquist P., Science 231, 1294-1297, 1986.
7. French R. and Ahlquist P., J Virol 62, 2411-2420, 1988.
8. Pacha R.F., Allison R.F., and Ahlquist P., Virology 174, 436-443, 1990.
9. Boccard F. and Baulcombe D., Virology 193, 563-578, 1993.
10. Van der Vossen E.A.G., Notenboom T., and Bol J.F., Virology 212, 663-672, 1995.
11. Siegel R.W., Adkins S., and Kao C.C., Proc Natl Acad Sci USA 94, 11238-11243, 1997.
12. De Graaff M., Thorburn C., and Jaspars E.M.J., Virology 213, 650-654, 1995.
13. Reusken C.B.E.M., Neeleman L., Brederode F.T., and Bol J.F., J Virol 71, 8385-8391, 1997.
14. Marsh L.E., Pogue G.P., and Hall T.C., Virology 172, 415-427, 1989.
15. Pogue G.P. and Hall T.C., J Virol 66, 674-684, 1992.
16. Van der Vossen E.A.G. and Bol J.F., Virology 220, 539-543, 1996.
17. Van Rossum C.M.A., Reusken C.B.E.M., Brederode F.T., and Bol J.F., J Gen Virol 78, 3045-3049, 1997.
18. Reusken C.B.E.M., Neeleman L., and Bol J.F., J Virol 69, 4552-4555, 1995.
19. Koper-Zwarthoff E.C., Brederode F.T., Veeneman G., Van Boom J.H., and Bol J.F., Nucleic Acids Res 8, 5635-5647, 1980.
20. Ahlquist P., Dasgupta R., and Kaesberg P., J Mol Biol 172, 369-383, 1984.
21. Dreher T.W. and Hall T.C., in Domingo E., Holland J.J., and Ahlquist P. (eds.). RNA genetics. Vol. I. RNA-directed virus replication. CRC, Boca Raton, FL, 1988, pp. 91-113.
22. Romero J., Dzianott A.M., and Bujarski J.J., Virology 187, 671-681, 1992.
23. Van der Kuyl A.C., Neeleman L., and Bol J.F., Virology 185, 496-499, 1991.
24. Van der Vossen E.A.G., Neeleman L., and Bol J.F., Virology 202, 891-903, 1994.
25. Houwing C.J. and Jaspars E.M.J., Biochimie 75, 617-621, 1993.
26. De Graaff M., Man in 't Veld M.R., and Jaspars E.M.J., Virology 208, 583-589, 1995.
27. Houwing C.J.. Van de Putte P., and Jaspars E.M.J., Arch Virol 143, 489-500, 1998.
28. Jaspars E.M.J., in Davies J.W. (ed.). Molecular plant virology. Vol. I. CRC Press, Boca Raton, FL, 1985, pp. 155-221.
29. Quadt R., Rosdorff H.J.M., Hunt T.W., and Jaspars E.M.J., Virology 182, 309-315, 1991.
30. Reusken C.B.E.M. and Bol J.F., Nucleic Acids Res 24, 2660-2665, 1996.
31. Baer M.L., Houser F., Loesch-Fries L.S., and Gehrke L., EMBO J 13, 727-735, 1994.
32. Zuidema D., Ph.D. Thesis, University of Leiden, 1983.
33. Grieco F., Martelli G.P., and Savino V., J Gen Virol 76, 929-937, 1995.
34. Ding S.-W., Anderson B.J., Haase H.R., and Symons R.H., Virology 198, 593-601, 1994.
35. Shi B.-J., Ding S.-W., and Symons R.H., J Gen Virol 78, 237-241, 1997.
36. Shi B.-J., Ding S.-W., and Symons R.H., J Gen Virol 78, 505-510, 1997.
37. Ahlquist P., Luckow V., and Kaesherg P., J Mol Biol 153, 23-38, 1981.
38. Allison R.F., Janda M., and Ahlquist P., Virology 172, 321-330, 1989.
39. Palukaitis P., Roossinck M.J., Dietzgen R.G., and Francki R.I.B., Advan Virus Res 41, 281-348, 1992.
40. Shi B.-J., Ding S.W., and Symons R.H., Gen Bank accession number U64435, 1996.
41. Salánki K., Balázs E., and Burgyán J., Virus Res 33, 281-289, 1994.
42. O'Reilly D., Thomas C.J.R., and Coutts R.H.A., Virus Genes 8, 79-81, 1994.
43. Moriones E., Roossinck M.J., and Garcia-Arenal F., J Gen Virol 72, 779-783, 1991.
44. Karasawa A., Nakaho K., Kakutani T., Minobe Y., and Ehara Y., Virology 185, 464-467, 1991.
45. Barker R.F., Jarvis N.P., Thompson D.V., Loesch-Fries L.S., and Hall T.C., Nucleic Acids Res 11, 2881-2891, 1983.
46. Langereis K., Mugnier M.-A., Cornelissen B.J.C., Pinck L., and Bol J.F., Virology 154, 409-414, 1986.
47. Ravelonandro M., Pinck M., and Pinck L., Biochimie 66, 395-402, 1984.
48. Neeleman L., Van der Kuyl A.C., and Bol J.F., Virology 181, 687-693, 1991.
49. Cornelissen B.J.C., Janssen H., Zuidema D., and Bol J.F., Nucleic Acids Res 12, 2427-2437, 1984.
50. Ge X. and Scott S.W., Virus Res 40, 57-63, 1996.
51. Scott S.W. and Ge X., J Gen Virol 76, 957-963, 1995.
52. Scott S.W. and Ge X., J Gen Virol 76, 1801-1806, 1995.
53. Rafael-Martin M. and Rivera-Bustamante R.F., Gen Bank accession number X86352, 1995.
54. Ge X., Scott S.W., and Zimmerman M.T., Arch Virol 142, 1213-1226, 1997.
55. Guo D., Maiss E., Adam G., and Casper R., J Gen Virol 76, 1073-1079, 1995.
56. Sánchez-Navarro J.A. and Pallás V., Arch Virol 142, 749-763, 1997.
57. Hammond R.W. and Crosslin J.M., Virology 208, 349-353, 1995.
58. Shiel P.J., Alrefai R.H., Domier L.L., Korban S.S., and Berger P.H., Arch Virol 140, 1247-1256, 1995.
59. Bachman E.J., Scott S.W., Ge X., and Vance V.B., Virology 201, 127-131, 1994.
60. Freier S.M., Kierzek R., Jaeger J.A., Sugimoto N, Caruthers M.H., Neilson T., and Turner D.H., Proc Natl Acad Sci USA 83, 9373-9377, 1986.
61. Jaeger J.A., Turner D.H., and Zuker M., Proc Natl Acad Sci USA 86, 7706-7710, 1989.
62. Francki R.I.B., in Francki R.I.B. (ed.). The plain viruses. Vol. I. Polyhedral virions with tripartite genomes. Plenum Press, New York, 1985, pp. 1-18.