Comparison of levels of genetic diversity detected with AFLP and microsatellite markers within and among mixed Q. petraea (MATT.) LIEBL. and Q. robur L. stands

Silvae Genetica

Volumn 51, Issue 2-3, 2002, Pages 72-79

  Mariette, Stéphanie ^a   Cottrell, J ^a   Csaikl, U M ^a   Goikoechea, P ^a   Konig A ^a   Lowe, A J ^a   Van Dam, B C ^a   Barreneche, T ^a   Bodenes C ^a   Streiff, R ^a   Burg, K ^a   Groppe, K ^a   Munro, R C ^a   Tabbener, H ^a   Kremer, A ^a  

^a CEMAGREF   (France)

Author keywords

AFLP; Genetic differentiation; Genetic diversity; Microsatellite; Quercus petraea; Quercus robur

Indexed keywords

BIODIVERSITY; GENES; POPULATION STATISTICS;

GENETIC DIVERSITY;

GENETIC ENGINEERING;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; GENETIC POLYMORPHISM; GENETIC VARIABILITY; MICROSATELLITE MARKER; PLANT STAND STRUCTURE; POPULATION GENETIC STRUCTURE;

QUERCUS PETRAEA; QUERCUS ROBUR;

EID: 0036032042     PISSN: 00375349     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (33)

1. Barreneche, T., Bahrman, N. and Kremer, A.: Two dimensional gel electrophoresis confirms the low level of genetic differentiation between Quercus robur L. and Quercus petraea (MATT.) LIEBL. For. Genet. 3: 89-92 (1996).
2. Baruffi, L., Damiani, G., Guglielmino, C. R., Bandi, C., Malacrida, A. R. and Gasperi, G.: Polymorphism within and between populations of Ceratitis capitata: Comparison between RAPD and multilocus enzyme electrophoresis data. Heredity 74: 425-437 (1995).
3. Bodenes, C., Joandet, S., Laigret, F. and Kremer, A.: Detection of genomic regions differentiating two closely related oak species Quercus petraea (MATT.) LIEBL. and Quercus robur L. Heredity 78: 433-444 (1997a).
4. Bodenes, C., Labbe, T., Pradere, S. and Kremer, A.: General vs local differentiation between two closely related white oak species. Mol. Ecol. 6: 713-724 (1997b).
5. Breyne, P., Boerjan, W., Gerats, T., Van Montagu, M. and Van Gysel, A.: Applications of AFLP in plant breeding, molecular biology and gene tics. Belg. J. Bot. 129: 107-117 (1997).
6. Brown, A. H. D. and Weir, B. S.: Measuring genetic variability in plant populations. In: Tanksley, S. D. and Orton, T. J. (Eds.): Isozymes in Plant Genetics and Breeding, Part A., Elsevier Science Publishers BV, Amsterdam. pp. 219-239 (1983).
7. Cagigas, M. E., Vazquez, E., Blanco, G. and Sánchez, J. A.: Combined assessment of genetic variability in populations of Brown trout (Salmo trutta L.) based on allozymes, microsatellites and RAPD markers. Mar. Biotechnol. 1: 286-296 (1999).
8. Dow, B. D., Ashley, M. V. and Howe, H. F.: Characterization of highly variable (GA/CT)n microsatellites in the bur oak, Quercus macrocarpa. Theor. Appl. Genet. 91: 137-141 (1995).
9. Ducousso, A., Guyon, J. P. and Kremer, A.: Latitudinal and altitudinal variation of bud burst in western populations of sessile oak [Quercus petraea (MATT.) LIEBL.]. Ann. Sci. For. 53: 775-782 (1996).
10. Dupouey, J.L. and Badeau, V.: Morphological variability of oaks (Quercus robur L., Quercus petraea (MATT.) LIEBL., Quercus pubescens) in northeastern France: preliminary results. Ann. Sci. For. 50: 35-40 (1993).
11. Gerber, S., Mariette, S., Streiff, R., Bodenes, C. and Kremer, A.: Comparison of microsatellites and AFLP markers for parentage analysis. Mol. Ecol. 9: 1037-1048 (2000).
12. Isabel, N., Beaulieu, J. and Bousequet, J.: Complete congruence between gene diversity estimates derived from genotypic data at enzyme and random amplified polymorphic DNA loci in black spruce. P. Natl. Acad. Sci. USA 92: 6369-6373 (1995).
13. Isabel, N., Beaulieu, J., Theriault, P. and Bousquet, J.: Direct evidence for biased gene diversity estimates from dominant random amplified polymorphic DNA (RAPD) fingerprints. Mol. Ecol. 8, 477-483 (1999).
14. Jin, L. and Chakraborty, R.: Population structure, stepwise mutations, heterozygote deficiency and their implications in DNA forensics. Heredity 74: 274-285 (1995).
15. Karp, A., Kresovich, S., Bhat, K. V., Ayad, W. G. and Hodgkin, T.: Molecular tools in plant genetic resources conservation: A guide to the technologies. IPGRI Technical Bulletin 2: 36-42 (1997).
16. th Edition, Griffin, London (1977).
17. Kremer, A., Dupouey, J. L., Deans, J. D., Cottrell, J., Csaikl, U., Finkeldey, R., Espinel, S., Jensen, J., Kleinschmit, J., Van Dam, B., Ducousso, A., Forrest, I., Lopez de Herredia, U., Lowe, A. J., Tutkova, M., Munro, R. C., Steinhoff, S. and Badeau, V.: Leaf morphological differentiation between Quercus robur and Quercus petraea is stable across western European mixed oak stands. Ann. For. Sci. (in press) (2002).
18. Kremer, A. and Petit, R. J.: Gene diversity in natural populations of oaks species. Ann. Sci. For. 50: 186-202 (1993).
19. Kremer, A., Petit, R. J., Zanetto, A., Fougère, V., Ducousso, A., Wagner, D. and Chauvin, C.: Nuclear and organelle gene diversity in Quercus robur and Q. petraea. In: Muller-Starck, G. and Ziehe, M. (Eds.): Genetic Variation in European. Populations of Forest Trees, Sauerländer's Verlag, Frankfurt am Main. pp. 141-166 (1991).
20. Lannér-Herrera, C., Gustafsson, M., Fält, A. S. and Bryngelsson, T.: Diversity in natural populations of wild Brassica oleracea as estimated by isozyme and RAPD analysis. Genetic Resources and Crop Evolution 43: 13-23 (1996).
21. Le Corre, V., Dumolin-Lapègue, S. and Kremer, A.: Genetic variation at allozyme and RAPD loci in sessile oak Quercus petraea (MATT.) LIEBL.: the role of history and geography. Mol. Ecol. 6, 519-529 (1997).
22. Lynch, M. and Milligan, B. G.: Analysis of population genetic structure with RAPD markers. Mol. Ecol. 3, 91-99 (1994).
23. Moreau, F., Kkleinschmit, J. and Kremer, A.: Molecular differentiation between Q. petraea and Q. robur assessed by random amplified DNA fragments. For. Genet. 1: 51-64 (1994).
24. Müller-Starck, G., Herzog, S. and Hattemer, H. H.: Intra- and inter-population genetic variation in juvenile populations of Quercus robur L. and Quercus petraea LIEBL. Ann. Sci. For. 50: 233-244 (1993).
25. Müller-Starck, G. and Ziehe, M.: Genetic variation in populations of Fagus sylvatica L., Quercus robur L. and Q. petraea. LIEBL. in Germany. In: Müller-Starck, G. and Ziehe, M. (Eds.): Genetic Variation in European Populations of Forest Trees, Sauerländer's Verlag, Frankfurt am Main. pp. 125-140 (1991).
26. Nei, M.: Molecular Evolutionary Genetics. Columbia University Press, New-York. (1987).
27. Petit, R. J. and Pons, O.: Bootstrap variance of diversity and differentiation estimators in a subdivided population. Heredity 80: 56-61 (1998).
28. Rousset, F.: Equilibrium values of measures of population subdivision for stepwise mutation processes. Genetics 14: 1357-1362 (1996).
29. Slatkin, M.: A measure of population subdivision based on microsatellite allele frequencies. Genetics 139: 457-462 (1995).
30. Sokal, R. and Rohlf, F. J.: Biometry. Freeman WH and Company, New-York (1995).
31. Steinkellner, H., Fluch, S., Turetschek, E., Lexer, C., Streiff, R., Kremer, A., Burg, K. and Gloessl, J.: Identification and characterization of (GA/CT)n microsatellite loci from Quercus petraea. Plant Mol. Biol. 33: 1093-1096 (1997).
32. Streiff, R., Ducousso, A., Lexer, C., Steinkellner, H., Glössl, J. and Kremer, A.: Pollen dispersal inferred from paternity analysis in a mixed oak stand of Quercus robur L. and Quercus petraea (MATT.) LIEBL. Mol. Ecol. 8: 831-841 (1999).
33. Zanetto, A., Roussel, G. and Kremer, A.: Geographic variation of inter-specific differentiation between Quercus robur L. and Quercus petraea (MATT.) LIEBL. For. Genet. 1: 111-123 (1994).