Comparison of microsatellites and amplified fragment markers for parentage analysis

Molecular Ecology

Volumn 9, Issue 8, 2000, Pages 1037-1048

  Gerber, S ^a   Mariette, S ^a   Streiff, R ^a   Bodenes C ^a   Kremer, A ^a  

^a CEMAGREF   (France)

Author keywords

AFLP; LOD scores; Markers; Microsatellites; Parentage

Indexed keywords

ALLELE; AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; GENE FLOW; GENE FREQUENCY; GENETIC ANALYSIS; MICROSATELLITE DNA; OAK; PARENTHOOD; SIMULATION;

ANGIOSPERMS; DNA, PLANT; GENETIC MARKERS; LOD SCORE; MICROSATELLITE REPEATS; POLYMORPHISM, GENETIC; PROBABILITY; TREES;

QUERCUS;

EID: 0033861056     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-294X.2000.00961.x     Document Type: Article

References (41)

1. Akerman S, Tammisola J, Lapinjoki S et al. (1995) RAPD markers in parentage confirmation of a valuable breeding progeny of European white birch. Canadian Journal of Forest Research, 25, 1070-1076.
2. Alderson G, Gibbs H, Sealy S (1999) Parentage and kinship studies in an obligate brood parasitic bird, the brown-headed cowbird (Molothrus ater), using microsatellite DNA markers. Journal of Heredity, 90, 182-190.
3. Billot C, Boury S, Benet H, Kloareg B (1999) Development of RAPD markers for parentage analysis in Laminaria digitata. Botanica Marina, 42, 307-314.
4. Devlin B, Ellstrand NC (1990) The development and application of a refined method for estimating gene flow from angiosperm paternity analysis. Evolution, 44, 248-259.
5. DeWoody J, Fletcher D, Wilkins S, Nelson W, Avise J (1998) Molecular genetic dissection of spawning, parentage, and reproductive tactics in a population of redbreast sunfish. Lepomis auritus. Evolution, 52, 1802-1810.
6. Dow BD, Ashley MV (1996) Microsatellite analysis of seed dispersal and parentage of saplings in bur oak, Quercus macrocarpa. Molecular Ecology, 5, 615-627.
7. Dow BD, Ashley MV (1998) High levels of gene flow in bur oak revealed by paternity analysis using microsatellites. Journal of Heredity, 89, 62-70.
8. Estoup A, Angers B (1998) Microsatellites and minisatellites for molecular ecology: theoretical and empirical considerations. In: Advances in Molecular Ecology (ed. Carvalho GR), pp. 55-86. IOS Press, the Netherlands.
9. Fondrk MK, Page REJ, Hunt GJ (1993) Paternity analysis of worker honeybees using random amplified polymorphic DNA. Naturwissenschaften, 80, 226-231.
10. Gachot-Neveu H, Petit M, Roeder J (1999) Paternity determination in two groups of Eulemur fulvus mayottensis: implications for understanding mating strategies. International Journal of Primatology, 20, 107-119.
11. Grashof-Bokdam CJ, Jansen J, Smulders MJM (1998) Dispersal patterns of Lonicera periclymenum determined by genetic analysis. Molecular Ecology, 7, 165-174.
12. Hadrys H, Schierwater B, Dellaporta S, Desalle R, Buss L (1993) Determination of paternity in dragonflies by random amplified polymorphic DNA fingerprinting. Molecular Ecology, 2, 79-87.
13. Höggren M, Tegelström H (1995) DNA fingerprinting shows within-season multiple paternity in the adder (Vipern berus). Copeia, 2, 271-277.
14. Hooper R, Siva-Jothy M (1996) Last male sperm precedence in a damselfly demonstrated by RAPD profiling. Molecular Ecology, 5, 449-452.
15. Jamieson A, Taylor SS (1997) Comparisons of three probability formulae for parentage exclusion. Animal Genetics, 28, 397-400.
16. Jarne P, Lagoda PJL (1996) Microsatellites, from molecules to populations and back. Trends in Ecology and Evolution, 11, 424-429.
17. Kichler K, Holder MT, Davis SK, Marquez R, Owens DW (1999) Detection of multiple paternity in the Kemp's ridley sea turtle with limited sampling. Molecular Ecology, 8, 819-830.
18. Krauss S (1999) Complete exclusion of nonsires in an analysis of paternity in a natural plant population using amplified fragment length polymorphism (AFLP). Molecular Ecology, 8, 217-226.
19. Krauss S, Peakall R (1998) An evaluation of the AFLP finger-printing technique for the analysis of paternity in natural populations of Persoonia Mollis (proteaceae). Australian Journal of Botany, 46, 533-546.
20. Levitan D, Grosberg R (1993) The analysis of paternity and maternity in the marine hydrozoan Hydractinia symbiolongicarpus using randomly amplified polymorphic dna (RAPD) markers. Molecular Ecology, 2, 315-326.
21. Lewis P, Snow A (1992) Deterministic paternity exclusion using RAPD markers. Molecular Ecology, 1, 155-160.
22. Marshall TC, Slate J, Kruuk LEB, Pemberton JM (1998) Statistical confidence for likelihood-based paternity inference in natural populations. Molecular Ecology, 7, 639-655.
23. Meagher TR, Thompson E (1986) The relationship between single parent and parent pair genetic likelihoods in genealogy reconstruction. Theoretical Population Biology, 29, 87-106.
24. Milligan BG, Mcmurry CK (1993) Dominant vs. codominant genetic markers in the estimation of male mating success. Molecular Ecology, 2, 275-283.
25. Mommens G, Vanzeveren A, Peelman LJ (1998) Effectiveness of bovine microsatellites in resolving paternity cases in American bison, Bison bison L. Animal Genetics, 29, 12-18.
26. Moran P, Garciavazquez E (1998) Multiple paternity in Atlantic salmon: a way to maintain genetic variability in relicted populations. Journal of Heredity, 89, 551-553.
27. Oreilly P, Herbinger C, Wright J (1998) Analysis of parentage determination in Atlantic salmon (Salmo salar) using micro-satellites. Animal Genetics, 29, 363-370.
28. Parker PG, Snow AA, Schug MD, Booton GC, Fuerst PA (1998) What molecules can tell us about populations: choosing and using a molecular marker. Ecology, 79, 361-382.
29. Press WH, Teukolsky SA, Vetterling WT, Flannery BP (1992) Chapter 7. Random numbers. In: Numerical Recipes in C: the Art of Scientific Computing, pp. 274-286. Cambridge University Press, Cambridge.
30. Prodöhl PA, Loughry WJ, McDonough CM, Nelson WS, Thompson EA, Avise JC (1998) Genetic maternity and paternity in a local population of armadillos assessed by microsatellite DNA markers and field data. American Naturalist, 151, 7-19.
31. Questiau S, Eybert M, Taberlet P (1999) Amplified fragment length polymorphism (AFLP) markers reveal extra-pair parentage in a bird species: the bluethroat (Luscinia svecica). Molecular Ecology, 8, 1331-1339.
32. Sampson J (1998) Multiple paternity in Eucalyptus rameliana (myrtaceae). Heredity, 81, 349-355.
33. SanCristobal M, Chevalet C (1997) Error tolerant parent identification from a finite set of individuals. Genetical Research, 70, 53-62.
34. Schnabel A (1998) Parentage analysis in plants: mating systems, gene flow, and relative fertilities. In: Advances in Molecular Ecology (ed. Carvalho GR), pp. 173-189. IOS Press, the Netherlands.
35. Skroch P, Nienhuis J (1995) Impact of scoring error and reproducibility of RAPD data on RAPD estimates of genetic distance. Theoretical and Applied Genetics, 91, 1086-1091.
36. Streiff R, Labbe T, Bacilieri R, Steinkellner H, Glossl J, Kremer A (1998) Within-population genetic structure in Quercus robur L. and Quercus petraea (Matt.) Liebl. assessed with isozymes and microsatellites. Molecular Ecology, 7, 317-328.
37. Streiff R, Ducousso A, Lexer C, Steinkellner H, Gloessl J, Kremer A (1999) Pollen dispersal inferred from paternity analysis in a mixed stand of Quercus robur L. and Quercus petraea (Matt.) Liebl. Molecular Ecology, 8, 831-841.
38. Tegelström H, Höggren M (1994) Paternity determination in the adder (Vipera berus) - DNA fingerprinting or random amplified polymorphic DNA? Biochemical Genetics, 32, 249-256.
39. Vos P, Hogers R, Bleeker M et al. (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Research, 23, 4407-4414.
40. Williams GK, Kubelik AR, Livak KJ, Rafalski JA, Tingey SV (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research, 18, 6531-6535.
41. Ziegenhagen B, Scholz F, Madaghiele A, Vendramin GG (1998) Chloroplast microsatellites as markers for paternity analysis in Abies alba. Canadian Journal of Forest Research - Revue Canadienne de Recherche Forestiere, 28, 317-321.