Detection of genomic regions differentiating two closely related oak species Quercus petraea (Matt.) Liebl. and Quercus robur L.

Heredity

Volumn 78, Issue 4, 1997, Pages 433-444

  Bodenes C ^a   Joandet, S ^a   Laigret, F ^a   Kremer, A ^a  

^a CEMAGREF   (France)

Author keywords

molecular differentiation; nucleotide divergence; oaks; RAPD; SCAR

Indexed keywords

QUERCUS; QUERCUS PETRAEA; QUERCUS ROBUR;

EID: 0030899676     PISSN: 0018067X     EISSN: None     Source Type: Journal    
DOI: 10.1038/hdy.1997.67     Document Type: Article

References (45)

1. ALTSCHUL, S. F., GISH, W., MILLER, W., MYERS, E. W. AND LIPMAN, D. J. 1990. Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
2. BACILIERI, R., DUCOUSSO, A., PETIT, R. J. AND KREMER, A. 1996. Mating system and asymmetric hybridization flow in a mixed stand of European oaks. Evolution, 50, 900-908.
3. BODÉNÈS, C., LAIGRET, F. AND KREMER, A. 1996. Inheritance and molecular variations of PCR-SSCP fragments in Pedunculate oak (Quercus robur L.). Theor. Appl. Genet. (in press).
4. CHALMERS, K. J., WAUGH, R., SPRENT, J. I., SIMONS, A. J. AND POWELL, W. 1992. Detection of genetic variation between and within populations of Gliricidia sepmium and G. maculata using RAPD markers. Heredity, 69, 465-472.
5. CHONG, D. K. X., YANG, R. Y. AND YEH, F. C. 1994. Nuclcotide divergence between populations of trembling aspen (Populus tremuloides) estimated with RAPDs. Curr. Genet., 26, 374-376.
6. CLARK, A. G. AND LANIGAN, C. M. S. 1993. Prospects for estimating nucleotide divergence with RAPDs. Mol. Biol. Evol., 10, 1096-1111.
7. CRAWFORD, D. J. 1985. Electrophoretic data and plant speciation. Syst. Bot., 10, 405-416.
8. DENHART, D. T. 1966. A membrane filter technique for the detection of complementary DNA. Biochem. Biophys. Res. Commun., 23, 641-646.
9. DUPOUEY, J. L. AND BADEAU, V. 1993. Morphological variability of oaks (Quercus robur L., Quercus petraea (Matt.) Liebl., Quercus pubescens Willd.) in northeastern France: preliminary results. Ann. Sci. For., 50, 35s-40 s.
10. FAVRE, J. M. AND BROWN, S. 1996. A flow cytometric evaluation of the nuclear DNA content and GC per cent in genomes of European oak species. Ann. Sci. For., 53, 915-917.
11. FLAVELL, R. B., BENETT, M. D., SMITH, J. B. AND SMITH, D. B. 1974. Genome size and the proportion of repeated nucleotide sequence DNA in plants. Biochem. Genet., 12, 257-269.
12. GRATTAPAGLIA, D. AND SEDEROFF, R. 1994. Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross: mapping strategy and RAPD markers. Genetics, 137, 1121-1137.
13. HARADA, K., KINOSHITA, A., SHUKOR, N. A. A., TACHIDA, H. AND YAMAYKI, T. 1995. Genetic variation estimated in three Shorea species by the RAPD analysis. Jap. J. Genet., 69, 713-718.
14. KENDALL, M. G. AND STUART, A. 1977. The Advanced Theory of Statistics, Vol. I, 4th edn. Griffin, London.
15. KLEIN-LANKHORST, R. M., VERMUNT, A., WEIDE, R., LIHARSKA, T. AND ZABEL, P. 1991. Isolation of molecular markers for tomato (L. esculentum) using random amplified polymorphic DNA (RAPD). Theor. Appl. Genet., 83, 108-114.
16. KLEINSCHMIT, J. R. G., BACILIERI, R., KREMER, A. AND ROLOFF, A. 1995. Comparison of morphological traits of pedunculate oak (Q. robur L.) and sessile oak (Q. petraea (Matt.) Liebl.). Silvae Genet., 44, 256-269.
17. KREMER, A. AND PETIT, R. J. 1993. Gene diversity in natural populations of oak species. Ann. Sci. For., 50, 186s-202s.
18. KRIEBER, M. AND ROSE, M. R. 1986. Molecular aspects of the species barrier. Ann. Rev. Ecol. Syst., 17, 465-485.
19. LEBART, L., MORINEAU, A. AND TABART, N. 1984. Multivariate Descriptive Stastitical Methods: Correspondance Analysis and Related Techniques for Large Matrices. J. Wiley and Sons, New York.
20. LISITSYN, N., LISITSYN, N. AND WIGLER, M. 1993. Cloning the differences between two complex genomes. Science, 259, 946-951.
21. MOREAU, F., KLEINSCHMIT, J. AND KREMER, A. 1994. Molecular differentiation between Q. petraea and Q. robur assessed by random amplified DNA fragments. Forest Genet., 1, 51-64.
22. MULLER-STARCK, G., HERZOG, S. AND HATTEMER, H. H. 1993. Intra and inter population genetic variation in juvenile populations of Quercus robur L. and Quercus petraea Liebl. Ann. Sci. For., 50, 233s-244s.
23. NEI, M. 1987. Molecular Evolutionary Genetics. Columbia University Press, New York.
24. NEI, M. AND LI, W. H. 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. U.S.A., 76, 5269-5273.
25. NEI, M. AND MILLER, J. C. 1990. A simple method for estimating average number of nucleotide substitutions within and between populations from restriction data. Genetics, 125, 873-879.
26. N'GORAN, J. A., LAURENT, V., RISTERUCCI, A. M. AND LANAUD, C. 1994. Comparative genetic diversity studies of Theobroma cacao L. using RFLP and RAPD markers. Heredity, 73, 589-597.
27. PARAN, I. AND MICHELMORE, R. W. 1993. Development of reliable PCR-based markers linked to downy mildew resistance genes in lettuce. Theor. Appl. Genet., 85, 985-993.
28. PELTIER, D., FARCY, E., DULIEU, H. AND BERVILLE, A. 1994. Origin, distribution and mapping of RAPD markers from wild Petunia species in Petunia hybrida Hort lines. Theor. Appl. Genet., 88, 637-645.
29. PETIT, R. J., WAGNER, D. B. AND KREMER, A. 1993 Ribosomal DNA gene and chloroplast DNA polymorphisms in a mixed stand of Quercus robur and Quercus petraea. Ann. Sci. For., 50, 41s-47s.
30. PLOMION, C., BARHMAN, N., DUREL, C. E. AND O'MALLEY, D. M. 1995. Genomic mapping in Pinus pinaster (maritime pine) using RAPD and protein markers. Heredity, 74, 661-668.
31. REED, K. C. AND MANN, D. A. 1985. Rapid transfer of DNA from agarose gels to nylon membranes. Nucl. Acids Res., 13, 7207-7221.
32. REITER, R. S., WILLIAMS, J. G. K., FELDMANN, K. A., RAFALSKI, J. A., TINGEY, S. V. AND SCOLNIK, P. A. 1992. Global and local genome mapping in Arabidopsis thaliana by using recombinant inbred lines and random amplified polymorphic DNAs. Proc. Natl. Acad. Sci. U.S.A., 89, 1477-1481.
33. ROSE, M. R. AND DOOLITTLE, W. F. 1983. Molecular biological mechanisms of speciation. Science, 200, 157-162.
34. RYCHLIK, W., SPENCER, W. J. AND RHOADS, R. E. 1990. Optimization of the annealing temperature for DNA amplification in vitro. Nucl. Acids Res., 18, 6409-6412.
35. SAGHAI-MAROOF, M. A., SOLIMAN, K. M., JORGENSEN, R. A. AND ALLARD, R. W. 1984. Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics. Proc. Natl. Acad. Sci. U.S.A., 81, 8014-8018.
36. SHELDON, F. H. 1995. Advances in the theory and practice of DNA hybridization as a systematic method. In: Schierwater, B., Streit, B., Wagner, G. P. and DeSalle, R. (eds) Molecular Ecology and Evolution: Approaches and Applications, pp. 285-297. Birkhäuser Verlag, Basel,
37. SOUTHERN, E. M. 1976. Detection of specific sequences among DNA fragments separated by gel electrophoresis J. Mol. Biol., 98, 503-517.
38. STEINHOFF, S. 1993. Results of species hybridization with Quercus robur L. and Quercus petraea (Matt.) Licbl. Ann. Sci. For., 50, 137s-143s.
39. THORMANN, C. E., FERREIRA, M. E., CAMARGO, L. E. A., TIVANG, J. G. AND OSBORN, T. C. 1994. Comparison of RFLP and RAPD markers to estimating genetic relationships within and among cruciferous species. Theor. Appl. Genet., 88, 973-980.
40. WILBUR, W. J. AND LIPMAN, D. J. 1983. Rapid similarity searches of nucleic acid and protein data banks. Proc. Natl. Acad. Sci. U.S.A., 80, 726-730.
41. WILKIE, S. E., ISAAC, P. G. AND SLATER, R. 1993. Random amplified polymorphic DNA (RAPD) markers for genetic analysis in Allium. Theor. Appl. Genet., 86 497-504.
42. WILLIAMS, J. G. K., KUBELIK, A. R., LIVAK, K. J., RAFALSKI, J. A. AND TINGEY, S. V. 1990. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucl. Acids Res., 18, 6531-6535.
43. WILLIAMS, J. G. K., HANAFEY, M. K., RAFALSKI, J. A. AND TINGEY, S. V. 1993. Genetic analysis using random amplified polymorphic DNA markers. Methods Enzymol., 318, 705-740.
44. XU, H., WILSON, D, J., ARULSEKAR, S. AND BAKALINSKY, A. T. 1995. Sequence specific polymerase chain-reaction markers derived from randomly amplified polymorphic DNA markers for fingerprinting grape (Vitis) root-stocks. J. Amer. Soc. Hort. Sci., 120, 714-720.
45. ZANETTO, A., ROUSSEL, G. AND KREMER, A. 1994. Geographic variation of inter-specific differentiation between Quercus robur L. and Quercus petraea (Matt.) Liebl. Forest Genet., 1, 111-123.