LINEs and gypsy-like retrotransposons in Hordeum species

Plant Molecular Biology

Volumn 49, Issue 1, 2002, Pages 1-14

  Vershinin, Alexander V ^a   Druka, Arnis ^b   Alkhimova, Alena G ^c   Kleinhofs, Andris ^b   Heslop Harrison, John S ^d  

^a INSTITUTE OF CYTOLOGY AND GENETICS   (Russian Federation)

^b WASHINGTON STATE UNIVERSITY   (United States)

^c INSTITUTE OF MOLECULAR BIOLOGY AND GENETICS   (Ukraine)

^d UNIVERSITY OF LEICESTER   (United Kingdom)

Author keywords

Barley; Genome evolution and size; Gypsy retrotransposons; LINEs; Retroelements

Indexed keywords

BIODIVERSITY; DNA; GENES; PLANTS (BOTANY);

HYBRIDIZATION;

MOLECULAR BIOLOGY;

EMBRYOPHYTA; HORDEUM; HORDEUM BULBOSUM; HORDEUM VULGARE; HORDEUM VULGARE SUBSP. VULGARE; TRANSPOSONS;

PLANT DNA;

AMINO ACID SEQUENCE; ARTICLE; BARLEY; CHEMISTRY; CHROMOSOME MAP; DNA SEQUENCE; FLUORESCENCE IN SITU HYBRIDIZATION; GENE DOSAGE; GENETICS; GENOME; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; RETROPOSON; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; CHROMOSOME MAPPING; DNA, PLANT; GENE DOSAGE; GENOME, PLANT; HORDEUM; IN SITU HYBRIDIZATION, FLUORESCENCE; MOLECULAR SEQUENCE DATA; RETROELEMENTS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID;

EID: 0036010757     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1014469830680     Document Type: Article

References (65)

1. Chromosomal distribution of reverse transcriptase-containing retroelements in two Triticeae species
2. Nuclear DNA amounts in angiosperms
3. A rapid alkaline extraction procedure for screening recombinant plasmid DNA
4. Genes encoding a subunit of respiratory NADH dehydrogenase (ND1) and a reverse transcriptase-like protein (RTL) are linked to ribosomal RNA gene pieces in Chlamydomonas reinhardii mitochondrial DNA
5. Comparative analysis of the chromosomal and genomic organization of Ty1-copia-like retrotransposons in pteridophytes, gymnosperms and angiosperms
6. Dictyostelium transposable element DIRS-1 preferentially inserts into DIRS-1 sequences
7. Genomic sequencing
8. Origins and evolutionary relationships of retroviruses
9. Transposing without ends: The non-LTR retrotransposable elements
10. Origin and evolutionary relationships of retroelements
11. Transposable elements controlling I-R hybrid dysgenesis in D. melanogaster are similar to mammalian LINEs
12. A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity
13. Extreme heterogeneity of Ty1-copia group retrotransposons in plants
14. Diversity, origin and distribution of retrotransposons (gypsy and copia) in conifers
15. A rapidly rearranging retrotransposons within the miniexon gene locus of Crithidia fasciculata
16. S1 SINE retroelements are methylated at symmetrical and non-symmetrical positions in Brassica napus: Identification of a preferred target site for asymmetrical methylation
17. Retrotransposon families in rice plants
18. The retrotransposon Rtip1 is integrated into a novel type of minisatellite, MiniSip1, in the genome of the common morning glory and carries another new type of minisatellite, MiniSip2
19. Retroelements: Propagation and adaptation
20. Retroelements in bacteria
21. Type I (R1) and type II (R2) ribosomal DNA insertions of Drosophila melanogaster are retrotransposable elements closely related to those of Bombyx mori
22. An integrated map of the barley genome
23. A molecular, isozyme and morphological map of the barley (Hordeum vulgare) genome
24. IFG, a gypsy-like retrotransposon in Pinux (Pinaceac), has an extensive history in pines
25. The genomic organization of non-LTR retrotransposons (LINEs) from three Beta species and five other angiosperms
26. Plant retrotransposons
27. Identification and characterization of novel retrotransposons of the gypsy type in rice
28. An abundant LINE-like element amplified in the genome of Lilium speciosum
29. Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition
30. BARE-1, a copia-like retroelement in barley (Hordeum vulgare L.)
31. Wheat retrotransposon families identified by reverse transcriptase domain analysis
32. Evolution of retroposons by acquisition or deletion of retrovirus-like genes
33. Molecular genetics of barley
34. Mitochondrial class II introns encode proteins related to the reverse transcriptases of retroviruses
35. BIS 1, a major component of the cereal genome and a tool for studying genomic organization
36. Complete nucleotide sequence of the Drosophila transposable element copia: Homology between copia and retroviral proteins
37. A contiguous 60 kb genomic stretch from barley reveals molecular evidence for gene islands in a monocot genome
38. The Ty1-copia group retrotransposons in Vicia species: Copy number, sequence heterogeneity and chromosomal localization
39. Transient occurrence of extrachromosomal DNA of an Arabidopsis thaliana transposon-like element, Tat1
40. Athila, a new retroelement from Arabidopsis thaliana
41. A Ty3/gypsy retrotransposon-like sequence localizes to the centromeric regions of cereal chromosomes
42. Molecular evolution of magellan, a maize Ty3/gypsy-like retrotransposon
43. Intimate association of microsatellite repeats with retrotransposons and other dispersed repetitive elements in barley
44. Evidence that a recent increase in maize genome size was caused by the massive amplification of intergene retrotransposons
45. Nested retrotransposons in the intergenic regions of the maize genome
46. Analysis and chromosomal localization of retrotransposons in sugar beet (Beta vulgaris L.): LINEs and Ty-copia-like elements as major components of the genome
47. Cin4, an insert altering the structure of the A1 gene in Zea mays, exhibits properties of non-viral retrotransposons
48. BARE-ID, a representative of a family of BARE-like elements of the barley genome
49. An env-like protein encoded by a Drosophila retroelement: Evidence that gypsy is a infectious retrovirus
50. Gypsy-like retrotransposons are widespread in the plant kingdom
51. Phylogenetic analysis of the genus Hordeum using repetitive DNA sequences
52. Retrons in bacteria
53. Minor bases in DNA of higher plants
54. Retrotransposon BARE-1 and its role in genome evolution in the genus Hordeum
55. Meiosis in interspecific Hordeum hybrids. I. Diploid combinations
56. Meiosis in interspecific Hordeum hybrids. II. Triploid hybrids
57. Retroelements in genome organization
58. Copia-like retrotransposons are ubiquitous among plants
59. Copia-like retrotransposons in rice: Sequence heterogeneity species distribution and chromosomal locations
60. Potential retroviruses in plants: Tat1 is related to a group of Arabidopsis thaliana Ty3/gypsy retrotransposons that encode envelope-like proteins
61. Multiple non-LTR retrotransposons in the genome of Arabidopsis thaliana
62. Origin and evolution of retroelements based upon their reverse transcriptase sequences
63. A bacterial artificial chromosome library for barley (Hordeum vulgare L.) and the identification of clones containing putative resistance genes