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Volumn 33, Issue 1, 1997, Pages 11-21

Comparative analysis of the chromosomal and genomic organization of Ty1-copia-like retrotransposons in pteridophytes, gymnosperms and angiosperms

Author keywords

Arabidopsis thaliana; ferns; in situ hybridization; phylogenetics; pines; reverse transcriptase genes

Indexed keywords

RNA DIRECTED DNA POLYMERASE;

EID: 0031046820     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1005797222148     Document Type: Article
Times cited : (104)

References (54)
  • 1
    • 51249171246 scopus 로고
    • Nuclear DNA content of some important plant species
    • Arumuganathan K, Earle ED: Nuclear DNA content of some important plant species. Plant Mol Biol Rep 9: 208-218 (1991).
    • (1991) Plant Mol Biol Rep , vol.9 , pp. 208-218
    • Arumuganathan, K.1    Earle, E.D.2
  • 2
    • 0028873712 scopus 로고
    • Nuclear DNA amounts in angiosperms
    • Bennett MD, Leitch IJ: Nuclear DNA amounts in angiosperms. Ann Bot 76: 113-176 (1995).
    • (1995) Ann Bot , vol.76 , pp. 113-176
    • Bennett, M.D.1    Leitch, I.J.2
  • 3
    • 0002949584 scopus 로고
    • Retrotransposons and the FB element from Drosophila melanogaster
    • Berg DE, Howe MM (eds), American Society for Microbiology, Washington DC
    • Bingham PM, Zachar Z: Retrotransposons and the FB element from Drosophila melanogaster. In: Berg DE, Howe MM (eds), Mobile DNA, pp. 485-502. American Society for Microbiology, Washington DC (1989).
    • (1989) Mobile DNA , pp. 485-502
    • Bingham, P.M.1    Zachar, Z.2
  • 4
    • 0002765558 scopus 로고
    • Transposable elements in Saccharomyces cerevisiae
    • Berg DE, Howe MM (eds) American Society for Microbiology, Washington DC
    • Boeke J: Transposable elements in Saccharomyces cerevisiae. In: Berg DE, Howe MM (eds) Mobile DNA, pp. 335-374. American Society for Microbiology, Washington DC (1989).
    • (1989) Mobile DNA , pp. 335-374
    • Boeke, J.1
  • 5
    • 0021799352 scopus 로고
    • Ty elements transpose through an RNA intermediate
    • Boeke JD, Garfinkel DJ, Styles CA, Fink GR: Ty elements transpose through an RNA intermediate. Cell 40: 491-500 (1985).
    • (1985) Cell , vol.40 , pp. 491-500
    • Boeke, J.D.1    Garfinkel, D.J.2    Styles, C.A.3    Fink, G.R.4
  • 6
    • 0027318630 scopus 로고
    • Non-random distribution of transposable elements in the nuclear genome of plants
    • Capel J, Montero LM, Martinez-Zapater JM, Salinas J: Non-random distribution of transposable elements in the nuclear genome of plants. Nucl Acids Res 21: 2369-2373 (1993).
    • (1993) Nucl Acids Res , vol.21 , pp. 2369-2373
    • Capel, J.1    Montero, L.M.2    Martinez-Zapater, J.M.3    Salinas, J.4
  • 7
    • 0029026039 scopus 로고
    • Transposable elements map in a conserved pattern of distribution extending from beta- Heterochromatin to centromeres in Drosophila melanogaster
    • Carmena M, González C: Transposable elements map in a conserved pattern of distribution extending from beta- heterochromatin to centromeres in Drosophila melanogaster. Chromosoma 103: 676-684 (1995).
    • (1995) Chromosoma , vol.103 , pp. 676-684
    • Carmena, M.1    González, C.2
  • 8
    • 0021956741 scopus 로고
    • Nucleotide sequence of a yeast Ty element: Evidence for a unusual mechanism of gene expression
    • Clare J, Farabaugh P: Nucleotide sequence of a yeast Ty element: evidence for a unusual mechanism of gene expression. Proc Natl Acad Sci USA 82: 2829-2833 (1985).
    • (1985) Proc Natl Acad Sci USA , vol.82 , pp. 2829-2833
    • Clare, J.1    Farabaugh, P.2
  • 9
    • 85004235284 scopus 로고
    • Nuclear volume, chromosome size and DNA content relationships in three species of Pinus
    • Dhillon SS: Nuclear volume, chromosome size and DNA content relationships in three species of Pinus. Cytologia 45: 555-560 (1980).
    • (1980) Cytologia , vol.45 , pp. 555-560
    • Dhillon, S.S.1
  • 10
    • 0018086289 scopus 로고
    • Distribution of heterochromatin in reconstructed karyotype of Vicia faba as identified by banding- and DNA-late replication patterns
    • Döbel P, Schubert I, Rieger R: Distribution of heterochromatin in reconstructed karyotype of Vicia faba as identified by banding- and DNA-late replication patterns. Chromosoma 69: 193-209 (1978).
    • (1978) Chromosoma , vol.69 , pp. 193-209
    • Döbel, P.1    Schubert, I.2    Rieger, R.3
  • 12
    • 0026516955 scopus 로고
    • Extreme heterogeneity of Ty1-copia group retrotransposons in plants
    • Flavell AJ, Smith DB, Kumar A: Extreme heterogeneity of Ty1-copia group retrotransposons in plants. Mol Gen Genet 231: 233-242 (1992).
    • (1992) Mol Gen Genet , vol.231 , pp. 233-242
    • Flavell, A.J.1    Smith, D.B.2    Kumar, A.3
  • 13
    • 0001475768 scopus 로고
    • The molecular characterization and organization of plant chromosomal DNA sequences
    • Flavell RB: The molecular characterization and organization of plant chromosomal DNA sequences. Ann Rev Plant Phys 31: 569-596 (1980).
    • (1980) Ann Rev Plant Phys , vol.31 , pp. 569-596
    • Flavell, R.B.1
  • 14
    • 0023058739 scopus 로고
    • Repetitive DNA and chromosome evolution in plants
    • Flavell RB: Repetitive DNA and chromosome evolution in plants. Philos Trans R Soc Lond Ser B 312: 227-242 (1986).
    • (1986) Philos Trans R Soc Lond Ser B , vol.312 , pp. 227-242
    • Flavell, R.B.1
  • 15
    • 0016351896 scopus 로고
    • Genome size and the pro-portion of repeated nucleotide sequence DNA in plants
    • Flavell RB, Bennett MD, Smith JB: Genome size and the pro-portion of repeated nucleotide sequence DNA in plants. Biochem Genet 12: 257-269 (1974).
    • (1974) Biochem Genet , vol.12 , pp. 257-269
    • Flavell, R.B.1    Bennett, M.D.2    Smith, J.B.3
  • 16
    • 0027952929 scopus 로고
    • Differentiation of field bean heterochromatin by in situ hybridization with a repeated FokI sequence
    • Fuchs J, Pich U, Meister A, Schubert I: Differentiation of field bean heterochromatin by in situ hybridization with a repeated FokI sequence. Chromosome Res 2: 25-28 (1994).
    • (1994) Chromosome Res , vol.2 , pp. 25-28
    • Fuchs, J.1    Pich, U.2    Meister, A.3    Schubert, I.4
  • 17
    • 0000131359 scopus 로고
    • The molecular cytogenetics of Vigna unguiculata (L.) Walp: The physical organization and characterization of 18s-5.8s-25s rRNA genes, 5s rRNA genes, telomere-like sequences, and a family of centromeric repetitive DNA sequences
    • Galasso I, Schmidt T, Pignone D, Heslop-Harrison JS: The molecular cytogenetics of Vigna unguiculata (L.) Walp: the physical organization and characterization of 18s-5.8s-25s rRNA genes, 5s rRNA genes, telomere-like sequences, and a family of centromeric repetitive DNA sequences. Theor Appl Genet 91: 928-935 (1995).
    • (1995) Theor Appl Genet , vol.91 , pp. 928-935
    • Galasso, I.1    Schmidt, T.2    Pignone, D.3    Heslop-Harrison, J.S.4
  • 18
    • 0018614061 scopus 로고
    • Cloning and characterization of ribosomal RNA genes from wheat and rye
    • Gerlach WL, Bedbrook JR: Cloning and characterization of ribosomal RNA genes from wheat and rye. Nucl Acids Res 7: 1869-1885 (1979).
    • (1979) Nucl Acids Res , vol.7 , pp. 1869-1885
    • Gerlach, W.L.1    Bedbrook, J.R.2
  • 19
    • 0024978849 scopus 로고
    • TntI, a mobile retroviral-like transposable element of tobacco isolated by plant cell genetics
    • Grandbastien MA, Spielmann A, Caboche M: TntI, a mobile retroviral-like transposable element of tobacco isolated by plant cell genetics. Nature 337: 376-380 (1989).
    • (1989) Nature , vol.337 , pp. 376-380
    • Grandbastien, M.A.1    Spielmann, A.2    Caboche, M.3
  • 20
    • 0344336409 scopus 로고
    • The ultrastructure of Arabidopsis thaliana chromosomes
    • Schweizer D, Penker K, Loidl J (eds) Vienna, June 2-5, Abstracts
    • Heslop-Harrison JS, Schwarzacher T: The ultrastructure of Arabidopsis thaliana chromosomes. In: Schweizer D, Penker K, Loidl J (eds) Fourth International Conference on Arabidopsis research, Vienna, June 2-5, Abstracts, p. 3 (1991).
    • (1991) Fourth International Conference on Arabidopsis Research , pp. 3
    • Heslop-Harrison, J.S.1    Schwarzacher, T.2
  • 22
    • 0027277083 scopus 로고
    • Ty1-copia group retrotransposons as ubiquitous components of plant genomes
    • Hirochika H, Hirochika R: Ty1-copia group retrotransposons as ubiquitous components of plant genomes. Jpn J Genet 68: 35-46 (1993).
    • (1993) Jpn J Genet , vol.68 , pp. 35-46
    • Hirochika, H.1    Hirochika, R.2
  • 24
    • 0028086514 scopus 로고
    • Molecular and physical organization of highly repetitive, undermethylated DNA from Pennisetum glaucum
    • Kamm A, Schmidt T, Heslop-Harrison JS: Molecular and physical organization of highly repetitive, undermethylated DNA from Pennisetum glaucum. Mol Gen Genet 244: 420-425 (1994).
    • (1994) Mol Gen Genet , vol.244 , pp. 420-425
    • Kamm, A.1    Schmidt, T.2    Heslop-Harrison, J.S.3
  • 25
    • 0029920981 scopus 로고    scopus 로고
    • The genomic and physical organization of Ty1-copia-like sequences as a component of large genomes in Pinus elliottii var. elliottii and other gymnosperms
    • Kamm A, Doudrick RL, Heslop-Harrison JS, Schmidt T: The genomic and physical organization of Ty1-copia-like sequences as a component of large genomes in Pinus elliottii var. elliottii and other gymnosperms. Proc Natl Acad Sci USA 93: 2708-2713 (1996).
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 2708-2713
    • Kamm, A.1    Doudrick, R.L.2    Heslop-Harrison, J.S.3    Schmidt, T.4
  • 26
    • 0021769939 scopus 로고
    • Sequence analysis of Vicia faba repeated DNA, the FokI repeat element
    • Kato A., Yakura K, Tanifuji S: Sequence analysis of Vicia faba repeated DNA, the FokI repeat element. Nucl Acids Res 12: 6415-6426 (1984).
    • (1984) Nucl Acids Res , vol.12 , pp. 6415-6426
    • Kato, A.1    Yakura, K.2    Tanifuji, S.3
  • 27
    • 0021867080 scopus 로고
    • Repeated DNA sequences found in the large spacer of Vicia faba rDNA
    • Kato A., Yakura K, Tanifuji S: Repeated DNA sequences found in the large spacer of Vicia faba rDNA. Biochem Biophys Acta 825: 411-415 (1985).
    • (1985) Biochem Biophys Acta , vol.825 , pp. 411-415
    • Kato, A.1    Yakura, K.2    Tanifuji, S.3
  • 28
    • 0030113185 scopus 로고    scopus 로고
    • Chromosomal and genomic organization of Ty1-copia-like retrotransposon sequences in the genus Avena
    • Katsiotis A, Schmidt T, Heslop-Harrison JS: Chromosomal and genomic organization of Ty1-copia-like retrotransposon sequences in the genus Avena. Genome 39: 410-417 (1996).
    • (1996) Genome , vol.39 , pp. 410-417
    • Katsiotis, A.1    Schmidt, T.2    Heslop-Harrison, J.S.3
  • 31
    • 0027403854 scopus 로고
    • Reverse transcriptase families and a copia-like retrotransposon, Osser, in the green alga Volvox carteri
    • Lindauer A, Fraser D, Brüderlein M, Schmitt R: Reverse transcriptase families and a copia-like retrotransposon, Osser, in the green alga Volvox carteri. FEBS Lett 319: 261-266 (1993).
    • (1993) FEBS Lett , vol.319 , pp. 261-266
    • Lindauer, A.1    Fraser, D.2    Brüderlein, M.3    Schmitt, R.4
  • 33
    • 0000444790 scopus 로고
    • Localization of tandemly repeated DNA sequences in Arabidopsis thaliana
    • Maluszynska J, Heslop-Harrison JS: Localization of tandemly repeated DNA sequences in Arabidopsis thaliana. Plant J. 1: 159-166 (1991).
    • (1991) Plant J. , vol.1 , pp. 159-166
    • Maluszynska, J.1    Heslop-Harrison, J.S.2
  • 35
    • 0000005872 scopus 로고
    • Duplicate sequences with a similarity to expressed genes in the genome of Arabidopsis thaliana
    • Mc Grath JM, Jancso MM, Pichersky E: Duplicate sequences with a similarity to expressed genes in the genome of Arabidopsis thaliana. Theor Appl Genet 86: 880-888 (1993).
    • (1993) Theor Appl Genet , vol.86 , pp. 880-888
    • Mc Grath, J.M.1    Jancso, M.M.2    Pichersky, E.3
  • 36
    • 0000526739 scopus 로고
    • Arabidopsis thaliana and plant molecular genetics
    • Meyerowitz EM, Pruitt RE: Arabidopsis thaliana and plant molecular genetics. Science 229: 1214-1218 (1985).
    • (1985) Science , vol.229 , pp. 1214-1218
    • Meyerowitz, E.M.1    Pruitt, R.E.2
  • 37
    • 0026072613 scopus 로고
    • BIS 1, a major component of the cereal genome and a tool for studying genomic organization
    • Moore G, Cheung W, Schwarzacher T, Flavell R: BIS 1, a major component of the cereal genome and a tool for studying genomic organization. Genomics 10: 469-476 (1991).
    • (1991) Genomics , vol.10 , pp. 469-476
    • Moore, G.1    Cheung, W.2    Schwarzacher, T.3    Flavell, R.4
  • 38
    • 0021879662 scopus 로고
    • Complete nucleotide sequence of the Drosophila transposable element copia: Homology between copia and retroviral proteins
    • Mount SM, Rubin GM: Complete nucleotide sequence of the Drosophila transposable element copia: homology between copia and retroviral proteins. Mol Cell Biol 5: 1630-1638 (1985).
    • (1985) Mol Cell Biol , vol.5 , pp. 1630-1638
    • Mount, S.M.1    Rubin, G.M.2
  • 39
    • 0027956080 scopus 로고
    • Centromeric repetitive sequences in Arabidopsis thaliana
    • Murata M. Ogura Y, Motoyoshi F: Centromeric repetitive sequences in Arabidopsis thaliana. Jpn J Genet 69: 361-370 (1994).
    • (1994) Jpn J Genet , vol.69 , pp. 361-370
    • Murata, M.1    Ogura, Y.2    Motoyoshi, F.3
  • 41
    • 0030111477 scopus 로고    scopus 로고
    • DNA regions flanking the major Arabidopsis thaliana satellite are principally enriched in Athila retroelement sequences
    • Pélissier T, Tutois S, Tourmente S, Deragon JM, Picard G: DNA regions flanking the major Arabidopsis thaliana satellite are principally enriched in Athila retroelement sequences. Genetica 97: 141-151 (1996).
    • (1996) Genetica , vol.97 , pp. 141-151
    • Pélissier, T.1    Tutois, S.2    Tourmente, S.3    Deragon, J.M.4    Picard, G.5
  • 42
    • 0029986858 scopus 로고    scopus 로고
    • The Ty1-copia group retrotransposons in Vicia species: Copy number, sequence heterogeneity and chromosomal localization
    • Pearce SR, Harrison G, Wilkinson M, Li D, Heslop-Harrison JS, Flavell A, Kumar A: The Ty1-copia group retrotransposons in Vicia species: copy number, sequence heterogeneity and chromosomal localization. Mol Gen Genet 250: 305-315 (1996).
    • (1996) Mol Gen Genet , vol.250 , pp. 305-315
    • Pearce, S.R.1    Harrison, G.2    Wilkinson, M.3    Li, D.4    Heslop-Harrison, J.S.5    Flavell, A.6    Kumar, A.7
  • 43
    • 0029742464 scopus 로고    scopus 로고
    • The Ty1-copia group retrotransposons, a major component of Allium cepa genome, are distributed throughout the chromosomes but are differently concentrated in the terminal heterochromatin
    • Pearce SR, Pich U, Harrison G, Flavell AJ, Heslop-Harrison JS (Pat), Schubert I, Kumar A: The Ty1-copia group retrotransposons, a major component of Allium cepa genome, are distributed throughout the chromosomes but are differently concentrated in the terminal heterochromatin. Chromosome Res 4: 357-364 (1996).
    • (1996) Chromosome Res , vol.4 , pp. 357-364
    • Pearce, S.R.1    Pich, U.2    Harrison, G.3    Flavell, A.J.4    Heslop-Harrison, J.S.5    Schubert, I.6    Kumar, A.7
  • 44
    • 0023053043 scopus 로고
    • Characterization of the genome of Arabidopsis thaliana
    • Pruitt RE, Meyerowitz EM: Characterization of the genome of Arabidopsis thaliana. J Mol Biol 187: 169-183 (1986).
    • (1986) J Mol Biol , vol.187 , pp. 169-183
    • Pruitt, R.E.1    Meyerowitz, E.M.2
  • 45
    • 0000439598 scopus 로고
    • Distribution and evolution of two satellite DNAs in the genus Beta
    • Schmidt T, Jung C, Metzlaff M: Distribution and evolution of two satellite DNAs in the genus Beta. Theor Appl Genet 82: 793-799 (1991).
    • (1991) Theor Appl Genet , vol.82 , pp. 793-799
    • Schmidt, T.1    Jung, C.2    Metzlaff, M.3
  • 46
    • 0029058136 scopus 로고
    • Analysis and chromosomal localization of retrotransposons in sugar beet (Beta vulgaris L.): LINEs and Ty1-copia-like elements as major components of the genome
    • Schmidt T, Kubis S, Heslop-Harrison JS: Analysis and chromosomal localization of retrotransposons in sugar beet (Beta vulgaris L.): LINEs and Ty1-copia-like elements as major components of the genome. Chromosome Res 3: 335-345 (1995).
    • (1995) Chromosome Res , vol.3 , pp. 335-345
    • Schmidt, T.1    Kubis, S.2    Heslop-Harrison, J.S.3
  • 47
    • 0027190705 scopus 로고
    • Copia-like retrotransposable element evolution in diploid and polyploid cotton (Gossypium L.)
    • VanderWiel PL, Voytas DF, Wendel JF: Copia-like retrotransposable element evolution in diploid and polyploid cotton (Gossypium L.). J Mol Evol 36: 429-447 (1993).
    • (1993) J Mol Evol , vol.36 , pp. 429-447
    • VanderWiel, P.L.1    Voytas, D.F.2    Wendel, J.F.3
  • 49
    • 0024290711 scopus 로고
    • A copia-like transposable element family in Arabidopsis thaliana
    • Voytas DF, Ausubel FM: A copia-like transposable element family in Arabidopsis thaliana. Nature 336: 242-244 (1988).
    • (1988) Nature , vol.336 , pp. 242-244
    • Voytas, D.F.1    Ausubel, F.M.2
  • 52
    • 0028170549 scopus 로고
    • A simple method using T4 DNA polymerase to clone polymerase chain reaction products
    • Wang K, Koop BF, Hood LP: A simple method using T4 DNA polymerase to clone polymerase chain reaction products. BioTechniques 17: 236-239 (1994).
    • (1994) BioTechniques , vol.17 , pp. 236-239
    • Wang, K.1    Koop, B.F.2    Hood, L.P.3
  • 53
    • 0029583698 scopus 로고
    • LTR-retrotransposons and MITEs: Important players in the evolution of plant genomes
    • Wessler SR, Bureau TE, White SE: LTR-retrotransposons and MITEs: important players in the evolution of plant genomes. Curr Opin Genet Devel 5: 814-821 (1995).
    • (1995) Curr Opin Genet Devel , vol.5 , pp. 814-821
    • Wessler, S.R.1    Bureau, T.E.2    White, S.E.3
  • 54
    • 0028053733 scopus 로고
    • Retrotransposons in the flanking regions of normal plant genes: A role for copia- like elements in the evolution of gene structure and expression
    • White SE, Habera LF, Wessler SR, Retrotransposons in the flanking regions of normal plant genes: A role for copia- like elements in the evolution of gene structure and expression. Proc Natl Acad Sci USA 91: 11792-11796 (1994).
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 11792-11796
    • White, S.E.1    Habera, L.F.2    Wessler, S.R.3


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