BARE-ID, a representative of a family of BARE-like elements of the barley genome

Genetica

Volumn 100, Issue 1-3, 1997, Pages 231-240

  ShcherbaN', A B ^a   Vershinin, A V ^a,b  

^a INSTITUTE OF CYTOLOGY AND GENETICS   (Russian Federation)

^b JOHN INNES CENTRE   (United Kingdom)

Author keywords

Barley; Evolution; Hordeum; Retrotransposon; Ty1 copia

Indexed keywords

EMBRYOPHYTA; HORDEUM; HORDEUM BULBOSUM; HORDEUM SECALINUM; HORDEUM VULGARE SUBSP. SPONTANEUM; HORDEUM VULGARE SUBSP. VULGARE; TRITICUM AESTIVUM;

EID: 0031438822     PISSN: 00166707     EISSN: None     Source Type: Journal    
DOI: 10.1023/a:1018350100089     Document Type: Article

References (51)

1. Altschul, S.F., W. Gish, W. Miller, E.W. Myers & D.G. Lipman, 1990. Basic local alignment search tool. J. Mol. Biol. 215: 403-410.
2. Barker, R.F., D.V. Thompson, D.R. Talbot, D.R. Swanson & J.L. Bennetzen, 1984. Nucleotide sequence of the maize transposable element Mu1. Nucl. Acids Res. 12: 5955-5967.
3. Bennetzen, J.L., P.S. Springer, A.D. Cresse & M. Hendrickx, 1993. Specificity and regulation of the Mutator transposable element system in maize. Crit. Rev. Plant Sci. 12: 57-95.
4. Boeke, J.D. & V.G. Corces, 1989. Transcription and reverse transcription of retrotransposons. Ann. Rev. Microbiol. 43: 403-434.
5. Boeke, J.D., D.J. Garfinkel, C.A. Styles & G.R. Fink, 1985. Ty elements transpose through an RNA intermediate. Cell 40: 491-500.
6. Bothmer, R. von, J. Flink & T. Landström, 1986. Meiosis in interspecific Hordeum hybrids. I. Diploid combinations. Can. J. Genet. Cytol. 28: 525-535.
7. Bothmer, R. von, J. Flink & T. Landström, 1987. Meiosis in interspecific Hordeum hybrids. II. Triploid hybrids. Evol. Trends Plants 1: 41-50.
8. Bothmer, R. von, J. Flink & T. Landström, 1988. Meiosis in interspecific Hordeum hybrids. IV. Tetraploid (4x × 4x) hybrids. Genome 30: 479-485.
9. Capello, J., S.M. Cohen & H.F. Lodish, 1984. Dictyostelium transposable element DIRS-1 preferentially inserts into DIRS-1 sequences. Mol. Cell Biol. 4: 2207-2213.
10. Capello, J., K. Handelsman & H. Lodish, 1985. Sequence of Dictyostellium DIRS-1: an apparent retrotransposon with inverted terminal repeats and an internal circle junction sequence. Cell 43: 105-115.
11. Döring, H.P., E. Tillemann & P. Starlinger, 1984. DNA sequence of the maize transposable element Dissociation. Nature 307: 127-130.
12. Feinberg, A.P. & B. Vogelstein, 1983. A technique for radiolabelling DNA restriction endonuclease fragments to high specific activity. Anal. Biochem. 132: 6-13.
13. Flavell, A.J., 1992. Ty1-copia group retrotransposons and the evolution of retroelements in the eukaryotes. Genetica 86: 203-214.
14. Flavell, A.J., E. Dumbar, R. Anderson, S.R. Pearce, R. Hartley & A. Kumar, 1992. Ty1-copia group retrotransposons are ubiquitous and heterogeneous in higher plants. Nucl. Acids Res. 20: 3639-3644.
15. Flavell, A.J., D.B. Smith & A. Kumar, 1992. Extreme heterogeneity of Ty1-copia group retrotransposons in plants. Mol. Gen. Genet. 231: 233-242.
16. Grandbastien, M.-A., 1992. Retroelements in higher plants. Trends Genet. 8: 103-108.
17. Grandbastien, M.-A., A. Spielmann & M. Caboche, 1989. Tnt1, a mobile retroviral-like transposable element of tobacco isolated by plant cell genetics. Nature 337: 376-380.
18. Gupta, P.K., G. Fedak, S.J. Molnar & R. Wheatcroft, 1989. Distribution of a Secale cereale DNA repeat sequence among 25 Hordeum species. Genome 32: 383-388.
19. Gvozdev, V.A., 1978. Eukaryotic genome organization. Mol. Biol. 12: 5-36 (Russian).
20. Harberd, N.P., R.B. Flavell & R.D. Thompson, 1987. Identification of a transposon-like insertion in a Glu-1 allele of wheat. Mol. Gen. Genet. 209: 326-332.
21. Hirochika, H., A. Fukuchi & F. Kikuchi, 1992. Retrotransposon families in rice. Mol. Gen. Genet. 233: 209-216.
22. Hirochika, H. & R. Hirochika, 1993. Ty1-copia group retrotransposons as ubiquitous components of plant genomes. Jpn. J. Genet. 68: 35-46.
23. Johns, M.A., J. Mottinger & M. Freeling, 1985. A low copy number, copia-like transposon in maize. EMBO J. 4: 1093-1102.
24. Jørgensen, R.B., 1986. Relationships in the barley genus (Hordeum): an electrophoretic examination of proteins. Hereditas 104: 273-291.
25. Joshi, S.P., 1987. An inspection of the domain between putative TATA-box and translation start site in 70 plant genes. Nucl. Acids Res. 15: 6643-6653.
26. Kamm, A., R.L. Doudrick, J.S. Heslop-Harrison & T. Schmidt, 1996. The genomic and physical organization of Ty-copia-like sequences as a component of large genomes in Pinus elliotti var. elliotti and other gymnosperms. Proc. Natl. Acad. Sci. USA 93: 2708-2713.
27. Kataoka, J., Y. Ogihara & K. Tsunewaki, 1987. Chloroplast DNA variation observed among Hordeum species. Barley Genet. 5: 515-524.
28. Kisev, N. & T. Rubenstein, 1980. Utility of ethidium bromide in the extraction from whole plants of high molecular weight maize DNA. Plant Physiol. 66: 1140-1144.
29. Konieczny, A., D.F. Voytas, M.P. Cummings & F.M. Ausubel, 1991. A superfamily of Arabidopsis thaliana retrotransposons. Genetics 127: 801-809.
30. Lee, D., T.H.N. Ellis, L. Turner, R.P. Hellens & W.G. Cleary, 1990. A copia-like element in Pisum demonstrates the use of dispersed repeated sequences in genetic analysis. Plant Mol. Biol. 15: 707-722.
31. Linde-Laursen, I., R. von Bothmer & N. Jacobsen, 1992. Relationships in the genus Hordeum: G-should be capitalized giemsa C-banded karyotypes. Hereditas 116: 111-116.
32. Lucas, H., G. Moore, G. Murphy & R.B. Flavell, 1992. Inverted repeats in the long-terminal repeats of the wheat retrotransposon Wis 2-1A. Mol. Biol. Evol. 9: 716-728.
33. Maniatis, T., E.F. Fritsch & J. Sambrook, 1982. Molecular cloning. A laboratory manual. Cold Spring Harbor Laboratory Press. Cold Spring Harbor, N.Y.
34. Manninen, I. & A.H. Schulman, 1993. BARE-1, a copia-like retroelement in barley (Hordeum vulgare L.). Plant Mol. Biol. 22: 829-846.
35. Molnar, S.J., P.K. Gupta, G. Fedak & R. Wheatcroft, 1989. Ribosomal DNA repeat unit polymorphism in 25 Hordeum species. Theor. Appl. Genet. 78: 387-392.
36. Monte, J.V., R.B. Flavell & J.P. Gustafson, 1995. WIS 2-1 A: an ancient retrotransposon in the Triticeae tribe. Theor. Appl. Genet. 91: 367-373.
37. Moore, G., W. Cheung, T. Schwarzacher & R. Flavell, 1991a. BIS 1, a major component of the cereal genome and a tool for studying genomic organization. Genomics 10: 469-476.
38. Moore, G., H. Lucas, N. Batty & R.B. Flavell, 1991b. A family of retrotransposons and associated variation in wheat. Genomics 10: 461-468.
39. Potter, S., M. Truett, M. Phillips & A. Maher, 1980. Eukaryotic transposable genetic elements with inverted terminal repeats. Cell 20: 639-647.
40. Rimpau, J., D.B. Smith & R.B. Flavell, 1980. Sequence organization in barley and oat chromosomes revealed by interspecies DNA/DNA hybridization. Heredity 44: 131-149.
41. Sambrook, J., E.F. Fritsch & T. Maniatis, 1989. Molecular cloning. A laboratory manual. 2nd ed. Cold Spring Harbor Laboratory Press. Cold Spring Harbor, N.Y.
42. Sanger, F., S. Nicklen & A.R. Coulson, 1977. DNA sequencing with chain-termination inhibitors. Proc. Natl. Acad. Sci. USA 74: 5463-5467.
43. Schmidt, D. & A. Graner, 1994. Genomic organization and sequence diversity of the long terminal repeat (LTR) of the BARE-1 retrotransposon family of barley. Barley Genet. Newsl. 24: 24-27.
44. Schmidt, T., S. Kubis & J.S. Heslop-Harrison, 1995. Analysis and chromosomal localization of retrotransposons in sugar beet (Beta vulgaris L.): LINEs and Ty1-copia-like elements as major components of the genome. Chromosome Res. 3: 335-345.
45. Svitashev, S., T. Bryngelsson, A. Vershinin, C. Pedersen, T. Säll & R. von Bothmer, 1994. Phylogenetic analysis of the genus Hordeum using repetitive DNA sequences. Theor. Appl. Genet. 89: 801-810.
46. Temin, H.W., 1981. Structure, variation and synthesis of retroviruses long terminal repeat. Cell 27: 1-3.
47. Varmus, H.E., 1983. Retroviruses, pp. 411-503 in Mobile genetic elements, edited by J.A. Shapiro. Academic Press, New York.
48. Vershinin, A.V., E.A. Salina, V.V. Solovyev & L.L. Timofeeva, 1990. Genomic organization, evolution, and structural peculiarities of highly repetitive DNA of Hordeum vulgare. Genome 33: 441-449.
49. Voytas, D.E. & F.M. Ausubel, 1988. A copia-like transposable element family in Arabidopsis thaliana. Nature 336: 242-244.
50. Xiong, Y. & T.H. Eickbush, 1990. Origin and evolution of retroelements based upon their reverse transcriptase sequences. EMBO J. 9: 3353-3362.
51. Xu, J., D. Procunier & K.J. Kasha, 1990. Species-specific in situ hybridization of Hordeum bulbosum chromosomes. Genome 33: 628-634.