메뉴 건너뛰기




Volumn 13, Issue 10, 1996, Pages 1384-1392

Wheat retrotransposon families identified by reverse transcriptase domain analysis

Author keywords

Aegilops; evolution; retrotransposon; reverse transcriptase; Triticum; wheat

Indexed keywords

PLANT DNA; RNA DIRECTED DNA POLYMERASE;

EID: 0029955972     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a025585     Document Type: Article
Times cited : (36)

References (37)
  • 1
    • 0000486464 scopus 로고
    • Apparent sources of the A genomes of wheats inferred from polymorphism in abundance and restriction fragment length of repeated nucleotide sequences
    • DVORAK, J., P. E. MCGUIRE, and B. CASSIDY. 1988. Apparent sources of the A genomes of wheats inferred from polymorphism in abundance and restriction fragment length of repeated nucleotide sequences. Genome 30:680-689.
    • (1988) Genome , vol.30 , pp. 680-689
    • Dvorak, J.1    Mcguire, P.E.2    Cassidy, B.3
  • 2
    • 0025632914 scopus 로고
    • Variation in repeated nucleotide sequences sheds light on the phylogeny of the wheat B and G genomes
    • DVORAK, J., and H. B. ZHANG. 1990. Variation in repeated nucleotide sequences sheds light on the phylogeny of the wheat B and G genomes. Proc. Natl. Acad. Sci. USA 87: 9640-9644.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 9640-9644
    • Dvorak, J.1    Zhang, H.B.2
  • 3
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • FELSENSTEIN, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 4
    • 0003437299 scopus 로고
    • Distributed by the author. Department of Genetics, University of Washington, Seattle
    • _. 1993. PHYLIP (phylogeny inference package). Version 3.5c. Distributed by the author. Department of Genetics, University of Washington, Seattle.
    • (1993) PHYLIP (Phylogeny Inference Package). Version 3.5c
  • 5
    • 0026516955 scopus 로고
    • Extreme heterogeneity of Ty1-copia group retrotransposons in plants
    • FLAVELL, A. J., D. B. SMITH, and A. KUMAR. 1992. Extreme heterogeneity of Ty1-copia group retrotransposons in plants. Mol. Gen. Genet. 231:233-242.
    • (1992) Mol. Gen. Genet. , vol.231 , pp. 233-242
    • Flavell, A.J.1    Smith, D.B.2    Kumar, A.3
  • 6
    • 0026544795 scopus 로고
    • Retroelements in higher plants
    • GRANDBASTIEN, M. A. 1992. Retroelements in higher plants. Trends Genet. 8:103-108.
    • (1992) Trends Genet. , vol.8 , pp. 103-108
    • Grandbastien, M.A.1
  • 7
    • 0024978849 scopus 로고
    • Tnt1, a mobile retroviral-like transposable element of tobacco isolated by plant cell genetics
    • GRANDBASTIEN, M. A., A. SPIELMANN, and M. CABOCHE. 1989. Tnt1, a mobile retroviral-like transposable element of tobacco isolated by plant cell genetics. Nature 337:376-380.
    • (1989) Nature , vol.337 , pp. 376-380
    • Grandbastien, M.A.1    Spielmann, A.2    Caboche, M.3
  • 8
    • 0020959710 scopus 로고
    • Studies on transformation of Escherichia coli with plasmids
    • HANAHAN, D. 1983. Studies on transformation of Escherichia coli with plasmids. J. Mol. Biol. 166:557.
    • (1983) J. Mol. Biol. , vol.166 , pp. 557
    • Hanahan, D.1
  • 9
    • 34250105207 scopus 로고
    • Identification of a transposon-like insertion in a Glu-1 allele of wheat
    • HARBERD, N. P., R. B. FLAVELL, and R. D. THOMPSON. 1987. Identification of a transposon-like insertion in a Glu-1 allele of wheat. Mol. Gen. Genet. 209:326-332.
    • (1987) Mol. Gen. Genet. , vol.209 , pp. 326-332
    • Harberd, N.P.1    Flavell, R.B.2    Thompson, R.D.3
  • 10
    • 0027168422 scopus 로고
    • Activation of tobacco retrotransposons during tissue culture
    • HIROCHIKA, H. 1993. Activation of tobacco retrotransposons during tissue culture. EMBO J. 12:2521-2528.
    • (1993) EMBO J. , vol.12 , pp. 2521-2528
    • Hirochika, H.1
  • 12
    • 0027277083 scopus 로고
    • Ty1-copia group retrotransposons as ubiquitous components of plant genomes
    • HIROCHIKA, H., and R. HIROCHIKA. 1993. Ty1-copia group retrotransposons as ubiquitous components of plant genomes. Jpn. J. Genet. 68:35-46.
    • (1993) Jpn. J. Genet. , vol.68 , pp. 35-46
    • Hirochika, H.1    Hirochika, R.2
  • 13
    • 0342298816 scopus 로고
    • A fundamental division in the Alu family of repeated sequences
    • JURKA, J., and T. SMITH. 1988. A fundamental division in the Alu family of repeated sequences. Proc. Natl. Acad. Sci. USA 85:4775-4778.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 4775-4778
    • Jurka, J.1    Smith, T.2
  • 14
    • 0002129568 scopus 로고
    • Cytologische und genetische Studien bei wichtigen Getreidearten mit besonderer Rücksicht auf das Verhalten der Chromosomen und die Sterilität in den Bastarden
    • KIHARA, H. 1924. Cytologische und genetische Studien bei wichtigen Getreidearten mit besonderer Rücksicht auf das Verhalten der Chromosomen und die Sterilität in den Bastarden. Mom. Coll. Sci. Kyoto Univ. B 1:1-200.
    • (1924) Mom. Coll. Sci. Kyoto Univ. B , vol.1 , pp. 1-200
    • Kihara, H.1
  • 15
    • 0001018539 scopus 로고
    • Discovery of the DD-analyser, one of the ancestors of Triticum vulgare
    • _. 1944. Discovery of the DD-analyser, one of the ancestors of Triticum vulgare (in Japanese). Agric. Hort. Tokyo 19(10): 13-14.
    • (1944) Agric. Hort. Tokyo , vol.19 , Issue.10 , pp. 13-14
  • 16
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
    • KIMURA, M. 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 17
    • 0025878873 scopus 로고
    • A superfamily of Arabidopsis thaliana retrotransposons
    • KONIECZNY, A., D. F. VOYTAS, M. P. CUMMINGS, and F. M. AUSUBEL. 1991. A superfamily of Arabidopsis thaliana retrotransposons. Genetics 127:801-809.
    • (1991) Genetics , vol.127 , pp. 801-809
    • Konieczny, A.1    Voytas, D.F.2    Cummings, M.P.3    Ausubel, F.M.4
  • 19
    • 0027651273 scopus 로고
    • BARE-1, a copia-like retroelement in barley (Hordeum vulgare L.)
    • MANNINEN, I., and A. H. SCHULMAN. 1993. BARE-1, a copia-like retroelement in barley (Hordeum vulgare L.). Plant Mol. Biol. 22:829-846.
    • (1993) Plant Mol. Biol. , vol.22 , pp. 829-846
    • Manninen, I.1    Schulman, A.H.2
  • 20
    • 0021715393 scopus 로고
    • The significance of responses of the genome to challenge
    • MCCLINTOCK, B. 1984. The significance of responses of the genome to challenge. Science 226:792-801.
    • (1984) Science , vol.226 , pp. 792-801
    • Mcclintock, B.1
  • 21
    • 77957217584 scopus 로고
    • The origin of Triticum spelta and its free-threshing hexaploid relatives
    • MCFADDEN, E. S., and E. R. SEARS. 1946. The origin of Triticum spelta and its free-threshing hexaploid relatives. J. Hered. 37:81-89, 107-116.
    • (1946) J. Hered. , vol.37 , pp. 81-89
    • Mcfadden, E.S.1    Sears, E.R.2
  • 22
    • 0000858466 scopus 로고
    • WIS 2-1A: An ancient retrotransposon in the Triticeae tribe
    • MONTE, J. V., R. B. FLAVELL, and J. P. GUSTAFSON. 1995. WIS 2-1A: an ancient retrotransposon in the Triticeae tribe. Theor. Appl. Genet. 91:367-373.
    • (1995) Theor. Appl. Genet. , vol.91 , pp. 367-373
    • Monte, J.V.1    Flavell, R.B.2    Gustafson, J.P.3
  • 23
    • 0026076470 scopus 로고
    • A family of retrotransposons and associated genomic variation in wheat
    • MOORE, G., H. LUCAS, N. BATTY, and R. FLAVELL. 1991. A family of retrotransposons and associated genomic variation in wheat. Genomics 10:461-468.
    • (1991) Genomics , vol.10 , pp. 461-468
    • Moore, G.1    Lucas, H.2    Batty, N.3    Flavell, R.4
  • 24
    • 0021152984 scopus 로고
    • Mutations of the Adh 1 gene in maize following infection with barley stripe mosaic virus
    • MOTTINGER, J. P., M. A. JOHNS, and M. FREELING. 1984. Mutations of the Adh 1 gene in maize following infection with barley stripe mosaic virus. Mol. Gen. Genet. 195:367-369.
    • (1984) Mol. Gen. Genet. , vol.195 , pp. 367-369
    • Mottinger, J.P.1    Johns, M.A.2    Freeling, M.3
  • 25
    • 0027033883 scopus 로고
    • Sequence analysis of WIS-2-1A, a retrotransposon-like element from wheat
    • MURPHY, G. J. P., H. LUCAS. G. MOORE, and R. B. FLAVELL. 1992. Sequence analysis of WIS-2-1A, a retrotransposon-like element from wheat. Plant Mol. Biol. 20:991-995.
    • (1992) Plant Mol. Biol. , vol.20 , pp. 991-995
    • Murphy, G.J.P.1    Lucas, H.2    Moore, G.3    Flavell, R.B.4
  • 26
    • 0019321718 scopus 로고
    • Rapid isolation of high molecular weight plant DNA
    • MURRAY, M. G., and W. F. THOMPSON. 1980. Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res. 8:4321-4325.
    • (1980) Nucleic Acids Res. , vol.8 , pp. 4321-4325
    • Murray, M.G.1    Thompson, W.F.2
  • 28
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • NEI, M., and T. GOJOBORI. 1986. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol. 3:418-426.
    • (1986) Mol. Biol. Evol. , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 29
    • 0024658495 scopus 로고
    • Variances of the average numbers of nucleotide substitutions within and between populations
    • NEI. M., and L. JIN. 1989. Variances of the average numbers of nucleotide substitutions within and between populations. Mol. Biol. Evol. 6:290-300.
    • (1989) Mol. Biol. Evol. , vol.6 , pp. 290-300
    • Nei, M.1    Jin, L.2
  • 30
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • SATTOU, N., and M. NEI. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Sattou, N.1    Nei, M.2
  • 32
    • 0027319606 scopus 로고
    • Wheat phylogeny determined by RFLP analysis of nuclear DNA. 1. Einkorn wheat
    • TAKUMI, S., S. NASUDA, Y-G. LIU, and K. TSUNEWAKI. 1993. Wheat phylogeny determined by RFLP analysis of nuclear DNA. 1. Einkorn wheat. Jpn. J. Genet. 68:73-79.
    • (1993) Jpn. J. Genet. , vol.68 , pp. 73-79
    • Takumi, S.1    Nasuda, S.2    Liu, Y.-G.3    Tsunewaki, K.4
  • 33
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighing, positions-specific gap penalties and weight matrix choice
    • THOMPSON, J. D., D. G. HIGGINS, and T. J. GIBSON. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighing, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 34
    • 0027190705 scopus 로고
    • Copia-like retrotransposable element evolution in diploid and polyploid cotton (Gossypium L.)
    • VANDERWIEL, P. L., D. F. VOYTAS, and J. F. WENDEL. 1993. Copia-like retrotransposable element evolution in diploid and polyploid cotton (Gossypium L.). J. Mol. Evol. 36:429-447.
    • (1993) J. Mol. Evol. , vol.36 , pp. 429-447
    • Vanderwiel, P.L.1    Voytas, D.F.2    Wendel, J.F.3
  • 36
    • 0024712231 scopus 로고
    • Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data
    • WOLFE, K. H., M. GOUY, Y-E. YANG, P. M. SHARP, and W.-H. LI. 1989, Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data. Proc. Natl. Acad. Sci. USA 86:6201-6205.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 6201-6205
    • Wolfe, K.H.1    Gouy, M.2    Yang, Y.-E.3    Sharp, P.M.4    Li, W.-H.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.