A theoretical study of thymine and uracil tetrads: Structures, properties, and interactions with the monovalent K+ cation

Journal of Physical Chemistry A

Volumn 105, Issue 45, 2001, Pages 10366-10371

  Gu, Jiande ^a   Leszczynski, Jerzy ^b  

^a Shanghai Jiao Tong University Affiliated Sixth People s Hospital   (China)

^b JACKSON STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ELECTROSTATICS; HYDRATION; HYDROGEN BONDS; MOLECULAR STRUCTURE; OXYGEN; POSITIVE IONS; POTASSIUM;

TELOMERES;

NUCLEIC ACIDS;

EID: 0035892204     PISSN: 10895639     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp004550v     Document Type: Article

References (36)

1. Zakian, V. A. Annu. Rev. Genet. 1989, 23, 579-604.
2. Blackburn, D. H. J. Biol. Chem. 1990, 765, 5919-5921.
3. Zakian, V. A. Science 1995, 270, 1601-1604.
4. Cooke, H. J.; Smith, B. A. Cold Spring Harbor Symp. Quant. Biol. 1986, 51, 213-219.
5. Harley, C. B.; Futcher, A. B.; Greider, C. W. Nature 1990, 345, 458-460.
6. Hastie, N. D. et al. Nature 1990, 346, 866-868.
7. Blackburn, D. H. Nature 1991, 350, 569-573.
8. Kang, C.; Zhang, X.; Moyzis, R.; Rich, A. Nature 1992, 356, 126-131.
9. Laughlan, G.; Murchie, A. I. H.; Norman, D. G.; Moore, M. P.; Moody, P. C. E.; Lilley, D. M. J.; Luisi, B. Science 1994, 265, 520-523.
10. Phillips, K.; Dauter, Z.; Murchie, A. I. H.; Lilley, D. M. J.; Luisi, B. J. Mol. Biol. 1997, 273, 171-182.
11. Patel, P. K.; Hosur, R. V. Nucleic Acids Res. 1999, 27, 3836-3843.
12. Metzger, S.; Lippert, B. J. Am. Chem. Soc. 1996, 118, 12467-12468.
13. Kettani, A.; Kumar, R. A.; Patel, D. J. J. Mol. Biol. 1995, 254, 638-656.
14. Darlow, J. M.; Leach, D. R. F. J. Mol. Biol. 1998, 275, 3-16.
15. Kettani, A.; Bouaziz, S.; Gönn, A.; Zhao, H.; Jones, R. A.; Patel, D. J. J. Mol. Biol. 1998, 282, 619-636.
16. Leonard, G. A.; Zhang, S.; Peterson, M. R.; Harrop, S. J.; Helliwell, J. R.; Cruse, W. B. T.; Langlois, d'E. B.; Kennard, O.; Grown, T.; Hunter, W. N. Structure 1995, 3, 335-340.
17. Cheong, C.; Moore, P. B. Biochemistry 1992, 31, 8406-8414.
18. Patel, P. K.; Hosur, R. V. Nucleic Acids Res. 1999, 27, 2457-2464.
19. Gu, J.; Leszczynski, J. Chem. Phys. Lett. 2001, 335, 465-474.
20. Gu, J.; Leszczynski, J.; Bansal, M. Chem. Phys. Lett. 1999, 311, 209-214.
21. Gu, J.; Leszczynski, J. J. Phys. Chem. A 2000, 104, 6308-6313.
22. Gu, J.; Leszczynski, J. J. Phys. Chem. A 2000, 104, 7353-7358.
23. Gu, J.; Leszczynski, J. J. Phys. Chem. A 2000, 104, 1898-1904.
24. Becke, A. D. J. Chem. Phys. 1993, 95, 5648-5652.
25. Lee, C.; Yang, W.; Parr, R. G. Phys. Rev. B 1988, 37, 785-789.
26. Miehlich, B.; Savin, A.; Stoll H.; Preuss, H. Chem. Phys. Lett. 1989, 157, 200-206.
27. Hehre, W. J.; Radom, L.; Schleyer, P. R.; Pople, J. A. Ab initio Molecular Orbital Theory; Wiley: New York, 1986.
28. Mebel, A. M.; Morokuma, K.; Lin, C. M. J. Chem. Phys. 1995, 103, 7414-7421.
29. Johnson, B. G.; Gill, P. M. W.; Pople, J. A. J. Chem. Phys. 1993, 98, 5612-5626.
30. Sponer, J.; Leszczynski, J.; Hobza, P. J. Phys. Chem. 1996, 100, 1965-1974.
31. Rappe, A. K.; Bernstein, E. R. J. Phys. Chem. A 2000, 104, 6117-6128.
32. Gu, J.; Leszczynski, J. J. Phys. Chem. A 1999, 103, 577-584.
33. Schafer, A.; Hörn, H.; Ahlrichs, R. J. Chem. Phys. 1992, 97, 2571.
34. Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Gill, P. M. W.; Johnson, B. G.; Robb, M. A.; Cheeseman, J. R.; Keith, T.; Petersson, G. A.; Montgomery, J. A.; Raghavachari, K.; Al-Laham, M. A.; Zakrzewski, V. G.; Ortiz, J. V.; Foresman, J. B.; Cioslowski, J.; Stefanov, B. B.; Nanayakkara, A.; Challacombe, M.; Peng, C. Y.; Ayala, P. Y.; Chen, W.; Wong, M. W.; Andres, J. L.; Replogle, E. S.; Gomperts, R.; Martin, R. L.; Fox, D. J.; Binkley, J. S.; Defrees, D. J.; Baker, J.; Siewart, J. P.; HeadGordon, M.; Gonzalez, C.; Pople, J. A. Gaussian 94, revision D.3; Gaussian, Inc.: Pittsburgh, PA, 1995.
35. Boys, S. F.; Bemardi, F. Mol. Phys. 1970, 19, 553.
36. Burgess, J. Métal Ions in Solution; Eillis Horwood Ltd.: Chichester, England, 1978.