메뉴 건너뛰기




Volumn 45, Issue 3, 2001, Pages 241-261

Linear programming optimization and a double statistical filter for protein threading protocols

Author keywords

Decoy structures; Gaps; Linear programming; Potential optimization; Threading

Indexed keywords

DNA BINDING PROTEIN;

EID: 0035889689     PISSN: 08873585     EISSN: None     Source Type: Journal    
DOI: 10.1002/prot.1145     Document Type: Article
Times cited : (108)

References (52)
  • 3
    • 0026704815 scopus 로고
    • Detection of native-like models for amino acid sequences of unknown three-dimensional structure in a database of known protein conformations
    • (1992) Proteins , vol.13 , pp. 258-271
    • Sippl, M.J.1    Weitckus, S.2
  • 9
    • 0033537993 scopus 로고    scopus 로고
    • GenTHREADER: An efficient and reliable protein fold recognition method for genomic sequences
    • (1999) J Mol Biol , vol.287 , pp. 797-815
    • Jones, D.T.1
  • 22
    • 0028015988 scopus 로고
    • The protein threading problem with sequence amino-acid interaction preferences is NP-complete
    • (1994) Protein Eng , vol.7 , pp. 1059-1068
    • Lathrop, R.H.1
  • 34
    • 0022360113 scopus 로고
    • Significance of nucleotide sequence alignments: A method for random sequence permutation that preserves dinucleotide and codon usage
    • (1985) Mol Biol Evol , vol.2 , pp. 526-538
    • Altschul, S.F.1    Erickson, B.W.2
  • 36
    • 0002954806 scopus 로고    scopus 로고
    • CASP3. Third community wide experiment on the critical assessment of techniques for protein structure prediction
    • (1999) Proteins , Issue.SUPPL. 3
  • 43
    • 0032512799 scopus 로고    scopus 로고
    • Empirical statistical estimates for sequence similarity searches
    • (1998) J Mol Biol , vol.276 , pp. 71-84
    • Pearson, W.R.1
  • 45
    • 0033005899 scopus 로고    scopus 로고
    • Pair potentials for protein folding: Choice of reference states and sensitivity of predicted native states to variations in the interaction schemes
    • (1999) Protein Sci , vol.2 , pp. 361-369
    • Betancourt, M.R.1    Thirumalai, D.2
  • 46
    • 0029919190 scopus 로고    scopus 로고
    • Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term for simulation and threading
    • (1996) J Mol Biol , vol.256 , pp. 623-644
    • Miyazawa, S.1    Jernigan, R.L.2
  • 49
    • 0029974002 scopus 로고    scopus 로고
    • Evaluation of threading specificity and accuracy
    • (1996) Proteins , vol.26 , pp. 172-185
    • Bryant, S.H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.