메뉴 건너뛰기




Volumn 2, Issue 4, 1997, Pages

Multiple sequence threading: Conditional gap placement

Author keywords

[No Author keywords available]

Indexed keywords

GLOBIN;

EID: 0030634724     PISSN: 13590278     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1359-0278(97)00061-8     Document Type: Article
Times cited : (8)

References (24)
  • 1
    • 0028239370 scopus 로고
    • Protein structure modelling from remote sequence similarity
    • Special issue: Genome Research/Molecular Biotechnology, Part 1. (Blöcker, H., ed.)
    • Taylor, W.R. (1994). Protein structure modelling from remote sequence similarity. Special issue: Genome Research/Molecular Biotechnology, Part 1. (Blöcker, H., ed.). J. Biotechnol. 12, 281-291.
    • (1994) J. Biotechnol. , vol.12 , pp. 281-291
    • Taylor, W.R.1
  • 2
    • 0028298124 scopus 로고
    • Remotely related sequences and structures analysis and predictive modelling
    • Taylor, W.R. (1994). Remotely related sequences and structures analysis and predictive modelling. Trends Biotechnol. 12, 154-157.
    • (1994) Trends Biotechnol. , vol.12 , pp. 154-157
    • Taylor, W.R.1
  • 3
    • 0011235510 scopus 로고
    • Sequence alignment of proteins and nucleic acids
    • (Meyers, R.A., ed.), VCH, New York
    • Taylor, W.R. (1995). Sequence alignment of proteins and nucleic acids. In Encyclopedia of Molecular Biology and Biotechnology. (Meyers, R.A., ed.), pp. 856-859, VCH, New York.
    • (1995) Encyclopedia of Molecular Biology and Biotechnology , pp. 856-859
    • Taylor, W.R.1
  • 4
    • 0024349252 scopus 로고
    • Protein structure alignment
    • Taylor, W.R. & Orengo, C.A. (1989). Protein structure alignment. J. Mol. Biol. 208, 1-22.
    • (1989) J. Mol. Biol. , vol.208 , pp. 1-22
    • Taylor, W.R.1    Orengo, C.A.2
  • 5
    • 0025317502 scopus 로고
    • Definition of general topological equivalence in protein structures a procedure involving comparison of properties and relationship through simulated annealing and dynamic programming
    • Šali, A. & Blundell, T.L. (1990). Definition of general topological equivalence in protein structures a procedure involving comparison of properties and relationship through simulated annealing and dynamic programming. J. Mol. Biol. 212, 403-428.
    • (1990) J. Mol. Biol. , vol.212 , pp. 403-428
    • Šali, A.1    Blundell, T.L.2
  • 6
    • 0024245156 scopus 로고
    • A flexible method to align large numbers of biological sequences
    • Taylor, W.R. (1988). A flexible method to align large numbers of biological sequences. J. Mol. Evol. 28, 161-169.
    • (1988) J. Mol. Evol. , vol.28 , pp. 161-169
    • Taylor, W.R.1
  • 7
    • 0027968068 scopus 로고
    • Clustal-W improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J.D., Higgins, D.G. & Gibson, T.J. (1994). Clustal-W improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 8
    • 0025341310 scopus 로고
    • Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins
    • Sippl, M.J. (1990). Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins. J. Mol. Biol. 213, 859-883.
    • (1990) J. Mol. Biol. , vol.213 , pp. 859-883
    • Sippl, M.J.1
  • 9
    • 0026690571 scopus 로고
    • A new approach to protein fold recognition
    • Jones, D.T., Taylor, W.R. & Thornton, J.M. (1992). A new approach to protein fold recognition. Nature 358, 86-89.
    • (1992) Nature , vol.358 , pp. 86-89
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 10
    • 0027318317 scopus 로고
    • An empirical energy function for threading protein-sequence through the folding motif
    • Bryant, S.H. & Lawrence, C.E. (1993). An empirical energy function for threading protein-sequence through the folding motif. Proteins 16, 92-112.
    • (1993) Proteins , vol.16 , pp. 92-112
    • Bryant, S.H.1    Lawrence, C.E.2
  • 11
    • 0025341237 scopus 로고
    • Identification of protein folds matching hydrophobicity patterns of sequence sets with solvent accessibility patterns of known structures
    • Bowie, J.U., Clarke, N.D., Pabo, C.O. & Sauer, R.T. (1990). Identification of protein folds matching hydrophobicity patterns of sequence sets with solvent accessibility patterns of known structures. Proteins 7, 257-264.
    • (1990) Proteins , vol.7 , pp. 257-264
    • Bowie, J.U.1    Clarke, N.D.2    Pabo, C.O.3    Sauer, R.T.4
  • 12
    • 0025997601 scopus 로고
    • Secondary structure-based profiles - Use of structure-conserving scoring tables in searching protein-sequence databases for structural similarities
    • Lüthy, R., McLachlan, A.D. & Eisenberg, D. (1991). Secondary structure-based profiles - use of structure-conserving scoring tables in searching protein-sequence databases for structural similarities. Proteins 10, 229-239.
    • (1991) Proteins , vol.10 , pp. 229-239
    • Lüthy, R.1    McLachlan, A.D.2    Eisenberg, D.3
  • 13
    • 0029951995 scopus 로고    scopus 로고
    • Protein fold recognition by mapping predicted secondary structures
    • Russell, R.B., Copley, R.R. & Barton, G.J. (1996). Protein fold recognition by mapping predicted secondary structures. J. Mol. Biol. 259, 349-365.
    • (1996) J. Mol. Biol. , vol.259 , pp. 349-365
    • Russell, R.B.1    Copley, R.R.2    Barton, G.J.3
  • 14
    • 0031588007 scopus 로고    scopus 로고
    • Multiple sequence threading: An analysis of alignment quality and stability
    • Taylor, W.R. (1997). Multiple sequence threading: an analysis of alignment quality and stability. J. Mol. Biol. 269, 902-943.
    • (1997) J. Mol. Biol. , vol.269 , pp. 902-943
    • Taylor, W.R.1
  • 15
    • 0028679124 scopus 로고
    • Motif-biased protein sequence alignment
    • Taylor, W.R. (1994). Motif-biased protein sequence alignment. J. Comp. Biol. 1, 297-311.
    • (1994) J. Comp. Biol. , vol.1 , pp. 297-311
    • Taylor, W.R.1
  • 16
    • 0028852001 scopus 로고
    • An investigation of conservation-biased gap-penalties for multiple protein sequence alignment
    • Internet journal Gene Combis World Wide Web
    • Taylor, W.R. (1995). An investigation of conservation-biased gap-penalties for multiple protein sequence alignment. Gene 165, GC27-35. Internet journal Gene Combis World Wide Web URL: http://www.elsevier.nl/locate/genecombis.
    • (1995) Gene , vol.165
    • Taylor, W.R.1
  • 17
    • 0029933675 scopus 로고    scopus 로고
    • Multiple protein sequence alignment algorithms for gap insertion
    • Computer Methods for Macromolecular Sequence Analysis. (Doolittle, R.F., ed.), Academic Press, Orlando, FL
    • Taylor, W.R. (1996). Multiple protein sequence alignment algorithms for gap insertion. In Computer Methods for Macromolecular Sequence Analysis. (Doolittle, R.F., ed.), Meth. Enzymol. 266, 343-367. Academic Press, Orlando, FL.
    • (1996) Meth. Enzymol. , vol.266 , pp. 343-367
    • Taylor, W.R.1
  • 18
    • 0003068337 scopus 로고
    • Building protein folds using distance geometry towards a general modeling and prediction method
    • (Merz, K.M. & LeGrand, S.M., eds), Birkhäuser (Springer-Verlag), Boston, MA
    • Taylor, W.R. & Aszódi, A. (1994). Building protein folds using distance geometry towards a general modeling and prediction method. In The Protein Folding Problem and Tertiary Structure Prediction. (Merz, K.M. & LeGrand, S.M., eds), pp. 165-192, Birkhäuser (Springer-Verlag), Boston, MA.
    • (1994) The Protein Folding Problem and Tertiary Structure Prediction , pp. 165-192
    • Taylor, W.R.1    Aszódi, A.2
  • 19
    • 33645669745 scopus 로고
    • Modelling and predicting protein structure using distance geometry
    • Bohr, H. & Brunak, S., eds. IOS Press, Elsevier, Amsterdam
    • Taylor, W.R. & Aszódi, A. (1994). Modelling and predicting protein structure using distance geometry. In Distance Based Approaches to Protein Structure Determination. (Bohr, H. & Brunak, S., eds), pp. 213-221. IOS Press, Elsevier, Amsterdam.
    • (1994) Distance Based Approaches to Protein Structure Determination , pp. 213-221
    • Taylor, W.R.1    Aszódi, A.2
  • 20
    • 0017873321 scopus 로고
    • Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins
    • Gamier, J., Osguthorpe, D.J. & Robson, B. (1978). Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins. J. Mol. Biol. 120, 97-120.
    • (1978) J. Mol. Biol. , vol.120 , pp. 97-120
    • Gamier, J.1    Osguthorpe, D.J.2    Robson, B.3
  • 21
    • 0023660653 scopus 로고
    • Prediction of protein secondary structure and active sites using the alignment of homologous sequences
    • Zvelebil, M.J., Barton, G.J., Taylor, W.R. & Sternberg, M.J.E. (1987). Prediction of protein secondary structure and active sites using the alignment of homologous sequences. J. Mol. Biol. 195, 957-961.
    • (1987) J. Mol. Biol. , vol.195 , pp. 957-961
    • Zvelebil, M.J.1    Barton, G.J.2    Taylor, W.R.3    Sternberg, M.J.E.4
  • 22
    • 0027489387 scopus 로고
    • Quantification of secondary structure prediction improvement using multiple alignments
    • Levine, J.M., Pascarella, S., Argos, P. & Gamier, J. (1993). Quantification of secondary structure prediction improvement using multiple alignments. Protein Eng. 6, 849-854.
    • (1993) Protein Eng. , vol.6 , pp. 849-854
    • Levine, J.M.1    Pascarella, S.2    Argos, P.3    Gamier, J.4
  • 23
    • 0029680109 scopus 로고    scopus 로고
    • A non-local gap-penalty for profile alignment
    • Taylor, W.R. (1996). A non-local gap-penalty for profile alignment. Bull. Math. Biol. 58, 1-18.
    • (1996) Bull. Math. Biol. , vol.58 , pp. 1-18
    • Taylor, W.R.1
  • 24
    • 0023646642 scopus 로고
    • Sequence specificity of retroviral proteases
    • Pearl, L.H. & Taylor, W.R. (1987). Sequence specificity of retroviral proteases. Nature 328, 482.
    • (1987) Nature , vol.328 , pp. 482
    • Pearl, L.H.1    Taylor, W.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.