Structural and functional features of eukaryotic mRNA untranslated regions

Gene

Volumn 276, Issue 1-2, 2001, Pages 73-81

  Pesole, Graziano ^a   Mignone, Flavio ^a   Gissi, Carmela ^a   Grillo, Giorgio ^b   Licciulli, Flavio ^b   Liuni, Sabino ^b  

^a UNIVERSITY OF MILAN   (Italy)

^b CNR   (Italy)

Author keywords

Base composition; Bioinformatics; Biological database; mRNA untranslated regions; Pattern recognition; Post transcriptional regulation; Repeat elements

Indexed keywords

MESSENGER RNA; OLIGONUCLEOTIDE; PROTEIN;

3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; CONFERENCE PAPER; DNA BASE COMPOSITION; EUKARYOTE; GENE EXPRESSION; GENETIC STABILITY; GENOME; HUMAN; INTRON; NONHUMAN; PRIORITY JOURNAL; RNA ANALYSIS; RNA STABILITY; RNA TRANSLATION; TRANSLATION REGULATION;

3' UNTRANSLATED REGIONS; 5' UNTRANSLATED REGIONS; ANIMALS; BASE COMPOSITION; BASE SEQUENCE; CONSERVED SEQUENCE; DATABASES, FACTUAL; EUKARYOTIC CELLS; HUMANS; INTRONS; REGULATORY SEQUENCES, NUCLEIC ACID; REPETITIVE SEQUENCES, NUCLEIC ACID; RNA, MESSENGER;

EID: 0035802386     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(01)00674-6     Document Type: Conference Paper

References (26)

1. RNA localization in development
2. Isochores and the evolutionary genomics of vertebrates
3. A 9-nt segment of a cellular mRNA can function as an internal ribosome entry site (IRES) and when present in linked multiple copies greatly enhances IRES activity
4. The 3′ untranslated region of messenger RNA: A molecular 'hotspot' for pathology?
5. CART classification of human 5′ UTR sequences
6. Statistical analysis of vertebrate sequences reveals that long genes are scarce in GC-rich isochores
7. SRS an indexing and retrieval tool for flat file data libraries
8. CLEANUP: A fast computer program for removing redundancies from nucleotide sequence databases
9. Comparative analysis of noncoding regions of 77 orthologous mouse and human gene pairs
10. Repeats in genomic DNA: Mining and meaning
11. Initiation of translation in prokaryotes and eukaryotes
12. Initial sequencing and analysis of the human genome
13. A common RNA structural motif involved in the internal initiation of translation of cellular mRNAs
14. Evolutionary parameters of the transcribed mammalian genome: An analysis of 2,820 orthologous rodent and human sequences
15. Cytoplasmic mRNA-protein interactions in eukaryotic gene expression
16. Identification and analysis of eukaryotic promoters: Recent computational approaches
17. The untranslated regions of eukaryotic mRNAs: Structure, function and bioinformatic tools for their analysis
18. PatSearch: A pattern matcher software that finds functional elements in nucleotide and protein sequences and assesses their statistical significance
19. UTRdb and UTRsite: Specialized databases of sequences and functional elements of 5′ and 3′ untranslated regions of eukaryotic mRNAs
20. Structural and compositional features of untranslated regions of eukaryotic mRNAs
21. WORDUP: An efficient algorithm for discovering statistically significant patterns in DNA sequences
22. Interspersed repeats and other mementos of transposable elements in mammalian genomes
23. mRNA translation: Influence of the 5′ and 3′ untranslated regions
24. Statistical analysis of the 5′ untranslated region of human mRNA using "Oligo-Capped" cDNA libraries
25. The role of the 5′ untranslated region of an mRNA in translation regulation during development
26. The sequence of the human genome