-
1
-
-
0032539812
-
Tritium planigraphy: From the accessible surface to the spatial structure of a protein
-
Bogacheva, E. N., Gol'danskii, V. I., Shishkov, A. V., Galkin, A. V., and Baratova, L. A. (1998) Tritium planigraphy: from the accessible surface to the spatial structure of a protein. Proc. Natl. Acad. Sci. USA 95, 2790-2794.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 2790-2794
-
-
Bogacheva, E.N.1
Gol'danskii, V.I.2
Shishkov, A.V.3
Galkin, A.V.4
Baratova, L.A.5
-
2
-
-
0028147959
-
Determination of the accessible surface of globular proteins by means of tritium planigraphy
-
Volynskaya, A. V., Kasumov, E. A., Bogascheva, E. N., Shishkov, A. V., and Goldanskii, V. I. (1994) Determination of the accessible surface of globular proteins by means of tritium planigraphy. Eur. Biophys. J. 23, 139-143.
-
(1994)
Eur. Biophys. J.
, vol.23
, pp. 139-143
-
-
Volynskaya, A.V.1
Kasumov, E.A.2
Bogascheva, E.N.3
Shishkov, A.V.4
Goldanskii, V.I.5
-
3
-
-
0026608998
-
Probing protein structure by solvent perturbation of nuclear magnetic resonance spectra. Nuclear magnetic resonance spectral editing and topological mapping in proteins by paramagnetic relaxation filtering
-
Esposito, G., Lesk, A. M., Molinari, H., Motta, A., Niccolai, N., and Pastore, A. (1992) Probing protein structure by solvent perturbation of nuclear magnetic resonance spectra. Nuclear magnetic resonance spectral editing and topological mapping in proteins by paramagnetic relaxation filtering. J. Mol. Biol. 224, 659-670.
-
(1992)
J. Mol. Biol.
, vol.224
, pp. 659-670
-
-
Esposito, G.1
Lesk, A.M.2
Molinari, H.3
Motta, A.4
Niccolai, N.5
Pastore, A.6
-
4
-
-
0027594495
-
Probing protein structure by solvent perturbation of NMR spectra. II. Determination of surface and buried residues in homologous proteins
-
Esposito, G., Lesk, A. M., Molinari, H., Motta, A., Niccolai, N., and Pastore, A. (1993) Probing protein structure by solvent perturbation of NMR spectra. II. Determination of surface and buried residues in homologous proteins. Biopolymers 33, 839-846.
-
(1993)
Biopolymers
, vol.33
, pp. 839-846
-
-
Esposito, G.1
Lesk, A.M.2
Molinari, H.3
Motta, A.4
Niccolai, N.5
Pastore, A.6
-
5
-
-
0028838115
-
Probing protein structure by solvent perturbation of NMR spectra: A comparison with photochemically induced dynamic nuclear polarization techniques applied to native α-lactalbumin
-
Improta, S., Molinari, H., Pastore, A., Consonni, R., and Zetta, L. (1995) Probing protein structure by solvent perturbation of NMR spectra: a comparison with photochemically induced dynamic nuclear polarization techniques applied to native α-lactalbumin. Eur. J. Biochem. 227, 78-86.
-
(1995)
Eur. J. Biochem.
, vol.227
, pp. 78-86
-
-
Improta, S.1
Molinari, H.2
Pastore, A.3
Consonni, R.4
Zetta, L.5
-
6
-
-
0030997805
-
Probing protein structure by solvent perturbation of NMR spectra: The surface accessibility of bovine pancreatic trypsin inhibitor
-
Molinari, H., Esposito, G., Ragona, L., Pegna, M., Niccolai, N., Brunne, R. M., et al. (1997) Probing protein structure by solvent perturbation of NMR spectra: the surface accessibility of bovine pancreatic trypsin inhibitor. Biophys. J. 73, 382-396.
-
(1997)
Biophys. J.
, vol.73
, pp. 382-396
-
-
Molinari, H.1
Esposito, G.2
Ragona, L.3
Pegna, M.4
Niccolai, N.5
Brunne, R.M.6
-
7
-
-
0026192276
-
Measurement of the exchange rates of rapidly exchanging amide protons: Application to the study of calmodulin and its complex with a myosin light chain kinase fragment
-
Spera, S., Ikura, M., and Bax, A. (1991) Measurement of the exchange rates of rapidly exchanging amide protons: application to the study of calmodulin and its complex with a myosin light chain kinase fragment. J. Biomol. NMR. 1, 155-165.
-
(1991)
J. Biomol. NMR.
, vol.1
, pp. 155-165
-
-
Spera, S.1
Ikura, M.2
Bax, A.3
-
8
-
-
0032186122
-
Measurement of amide hydrogen exchange by MALDI-TOF mass spectrometry
-
Mandell, J. G., Falick, A. M., and Komives, E. A. (1998) Measurement of amide hydrogen exchange by MALDI-TOF mass spectrometry. Anal. Chem. 70, 3987-3995.
-
(1998)
Anal. Chem.
, vol.70
, pp. 3987-3995
-
-
Mandell, J.G.1
Falick, A.M.2
Komives, E.A.3
-
9
-
-
0028096754
-
Mapping staphylococcal nuclease conformation using an EDTA-Fe derivative attached to genetically engineered cysteine residues
-
Ermacora, M. R., Ledman, D. W., Hellinga, H. W., Hsu, G. W., and Fox, R. O. (1994) Mapping staphylococcal nuclease conformation using an EDTA-Fe derivative attached to genetically engineered cysteine residues. Biochemistry 33, 13,625-13,641.
-
(1994)
Biochemistry
, vol.33
, pp. 13625-13641
-
-
Ermacora, M.R.1
Ledman, D.W.2
Hellinga, H.W.3
Hsu, G.W.4
Fox, R.O.5
-
10
-
-
0028955505
-
Predicting the helix packing of globular proteins by self-correcting distance geometry
-
Mumenthaler, C. and Braun, W. (1995) Predicting the helix packing of globular proteins by self-correcting distance geometry. Protein Sci. 4, 863-871.
-
(1995)
Protein Sci.
, vol.4
, pp. 863-871
-
-
Mumenthaler, C.1
Braun, W.2
-
11
-
-
0039301242
-
Determining structures of large proteins and protein complexes by NMR
-
(Krishna, N. R., Berliner, L. J., eds.), Kluwer Academic/Plenum Publishers, New York
-
Clore, G. M. and Gronenborn, A. M. (1999) Determining structures of large proteins and protein complexes by NMR, in Modern Techniques in Protein NMR, vol. 16 (Krishna, N. R., Berliner, L. J., eds.), Kluwer Academic/Plenum Publishers, New York, pp.
-
(1999)
Modern Techniques in Protein NMR
, vol.16
-
-
Clore, G.M.1
Gronenborn, A.M.2
-
12
-
-
0040486415
-
-
Wang, Y. X., Jacob, J., Cordier, F., Wingfield, P., Stahl, S. J., Lee-Huan, S., et al. (1999) Measurement of 3hJNC′ connectivities across hydrogen bonds in a 30 kDa protein.
-
(1999)
Measurement of 3hJNC′ Connectivities Across Hydrogen Bonds in a 30 kDa Protein
-
-
Wang, Y.X.1
Jacob, J.2
Cordier, F.3
Wingfield, P.4
Stahl, S.J.5
Lee-Huan, S.6
-
13
-
-
0033599303
-
Direct observation of hydrogen bonds in proteins by interresidue 3hJNC′ scalar couplings
-
Cordier, F. and Grzesiek, S. (1999) Direct observation of hydrogen bonds in proteins by interresidue 3hJNC′ scalar couplings. J. Am. Chem. Soc. 121, 1601-1602.
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 1601-1602
-
-
Cordier, F.1
Grzesiek, S.2
-
14
-
-
0033639087
-
MASIA: Recognition of patterns and properties in multiple aligned sequences
-
In press
-
Zhu, H., Schein, C. H., and Braun, W. (2000) MASIA: recognition of patterns and properties in multiple aligned sequences. Bioinformatics In press.
-
(2000)
Bioinformatics
-
-
Zhu, H.1
Schein, C.H.2
Braun, W.3
-
15
-
-
4243265048
-
Homology modeling and simulations of nuclease structures
-
(Schein, C. H., ed.), Humana Press, Totowa, NJ
-
Soman, K. V., Schein, C. H., Zhu, H., and Braun, W. (2000) Homology modeling and simulations of nuclease structures, in Nuclease Methods and Protocols, vol. 60 (Schein, C. H., ed.), Humana Press, Totowa, NJ.
-
(2000)
Nuclease Methods and Protocols
, vol.60
-
-
Soman, K.V.1
Schein, C.H.2
Zhu, H.3
Braun, W.4
-
16
-
-
0028238582
-
Pattern recognition and self-correcting distance geometry calculations applied to myohemerythrin
-
Hanggi, G. and Braun, W. (1994) Pattern recognition and self-correcting distance geometry calculations applied to myohemerythrin. FEBS Lett. 344, 147-153.
-
(1994)
FEBS Lett.
, vol.344
, pp. 147-153
-
-
Hanggi, G.1
Braun, W.2
-
17
-
-
0032612579
-
Ab initio protein structure prediction of CASP III targets using Rosetta
-
Simons, K. T., Bonneau, R., Riczinski, I., and Baker, D. (1999) Ab initio protein structure prediction of CASP III targets using Rosetta. Prot. Struct. Funct. Gen. Suppl. 3, 171-176.
-
(1999)
Prot. Struct. Funct. Gen. Suppl.
, vol.3
, pp. 171-176
-
-
Simons, K.T.1
Bonneau, R.2
Riczinski, I.3
Baker, D.4
-
18
-
-
0033150685
-
Progress in protein structure prediction: Assessment of CASP3
-
Sternberg, M. J. E., Bates, P. A., Kelley, L. A., and MacCallum, R. M. (1999) Progress in protein structure prediction: assessment of CASP3. Curr. Opin. Struct. Biol. 9, 368-373.
-
(1999)
Curr. Opin. Struct. Biol.
, vol.9
, pp. 368-373
-
-
Sternberg, M.J.E.1
Bates, P.A.2
Kelley, L.A.3
MacCallum, R.M.4
-
19
-
-
0026089657
-
Efficient computation of three-dimensional protein structures in solution from NMR data using the program DIANA and the supporting programs CALIBA, HABAS, and GLOMSA
-
Günter, P., Braun, W., and Wuthrich, K. (1991) Efficient computation of three-dimensional protein structures in solution from NMR data using the program DIANA and the supporting programs CALIBA, HABAS, and GLOMSA. J. Mol. Biol. 217, 517-530.
-
(1991)
J. Mol. Biol.
, vol.217
, pp. 517-530
-
-
Günter, P.1
Braun, W.2
Wuthrich, K.3
-
20
-
-
0039301233
-
Sequence specificity, statistical potentials and three-dimensional structure prediction with self-correcting distance geometry calculations of beta-sheet formation
-
Zhu, H. and Braun, W. (1999) Sequence specificity, statistical potentials and three-dimensional structure prediction with self-correcting distance geometry calculations of beta-sheet formation. Prot. Sci. 8, 1-17.
-
(1999)
Prot. Sci.
, vol.8
, pp. 1-17
-
-
Zhu, H.1
Braun, W.2
-
21
-
-
0025877987
-
The crystal structure of staphylococcal nuclease refined at 1.7 Angstrom resolution
-
Hynes, T. R. and Fox, R. O. (1991) The crystal structure of staphylococcal nuclease refined at 1.7 Angstrom resolution. Prot. Struct. Funct. Genet. 10, 92.
-
(1991)
Prot. Struct. Funct. Genet.
, vol.10
, pp. 92
-
-
Hynes, T.R.1
Fox, R.O.2
-
22
-
-
0033562095
-
The ins and outs of HIV
-
Hope, T. J. (1999) The ins and outs of HIV Rev. Arch Biochem. Biophys. 365, 186-191.
-
(1999)
Rev. Arch Biochem. Biophys.
, vol.365
, pp. 186-191
-
-
Hope, T.J.1
-
23
-
-
0029784592
-
Alpha helix-RNA major groove recognition in an HIV-1 rev peptide-RRE RNA complex
-
Battiste, J. L., Mao, H., Rao, N. S., Tan, R., Muhandiram, D. R., Kay, L. E., et al. (1996) Alpha helix-RNA major groove recognition in an HIV-1 rev peptide-RRE RNA complex. Science 273, 1547-1551.
-
(1996)
Science
, vol.273
, pp. 1547-1551
-
-
Battiste, J.L.1
Mao, H.2
Rao, N.S.3
Tan, R.4
Muhandiram, D.R.5
Kay, L.E.6
-
24
-
-
0028997808
-
NMR solution structure of the RNA-binding peptide from human immunodeficiency virus (type 1)
-
Scanlon, M. J., Fairlie, D. P., Craik, D. J., Englebretsen, D. R., and West, M. L. (1995) NMR solution structure of the RNA-binding peptide from human immunodeficiency virus (type 1) Rev. Biochem. 34, 8242-8249.
-
(1995)
Rev. Biochem.
, vol.34
, pp. 8242-8249
-
-
Scanlon, M.J.1
Fairlie, D.P.2
Craik, D.J.3
Englebretsen, D.R.4
West, M.L.5
-
25
-
-
0030475417
-
Deep penetration of an alpha-helix into a widened RNA major groove in the HIV-1 rev peptide-RNA aptamer complex
-
Ye, X., Gorin, A., Ellington, A. D., and Patel, D. J. (1996) Deep penetration of an alpha-helix into a widened RNA major groove in the HIV-1 rev peptide-RNA aptamer complex. Nat. Struct. Biol. 3, 1026-1033.
-
(1996)
Nat. Struct. Biol.
, vol.3
, pp. 1026-1033
-
-
Ye, X.1
Gorin, A.2
Ellington, A.D.3
Patel, D.J.4
-
26
-
-
0028295562
-
Helix-loop-helix motif in HIV-1 rev
-
Auer, M., Gremlich, H.-U., Seifert, J.-M., Daly, T. J., Parslow, T. G., Casari, G., and Gstach, H. (1994) Helix-loop-helix motif in HIV-1 rev. Biochemistry 33, 2988-2996.
-
(1994)
Biochemistry
, vol.33
, pp. 2988-2996
-
-
Auer, M.1
Gremlich, H.-U.2
Seifert, J.-M.3
Daly, T.J.4
Parslow, T.G.5
Casari, G.6
Gstach, H.7
-
27
-
-
0031927429
-
Three-dimensional structure of HIV-1 rev protein filaments
-
Watts, N. R., Misra, M., Wingfield, P. T., Stahl, S. J., Cheng, N., Trus, B. L., and Steven, A. C. (1998) Three-dimensional structure of HIV-1 rev protein filaments. J. Struct. Biol. 121, 41-52.
-
(1998)
J. Struct. Biol.
, vol.121
, pp. 41-52
-
-
Watts, N.R.1
Misra, M.2
Wingfield, P.T.3
Stahl, S.J.4
Cheng, N.5
Trus, B.L.6
Steven, A.C.7
-
28
-
-
0031047864
-
Probing the structure of the HIV-1 Rev transactivator protein by functional analysis
-
Thomas, S. L., Hauber, J., and Casari, G. (1997) Probing the structure of the HIV-1 Rev transactivator protein by functional analysis. Prot. Eng. 10, 103-107.
-
(1997)
Prot. Eng.
, vol.10
, pp. 103-107
-
-
Thomas, S.L.1
Hauber, J.2
Casari, G.3
-
29
-
-
0031924395
-
Functional analysis of the human immunodeficiency virus type 1 Rev protein oligomerization interface
-
Thomas, S. L., Oft, M., Jaksche, H., Casari, G., Heger, P., Dobrovnik, M., et al. (1998) Functional analysis of the human immunodeficiency virus type 1 Rev protein oligomerization interface. J. Virol. 72, 2935-2944.
-
(1998)
J. Virol.
, vol.72
, pp. 2935-2944
-
-
Thomas, S.L.1
Oft, M.2
Jaksche, H.3
Casari, G.4
Heger, P.5
Dobrovnik, M.6
-
30
-
-
0001528720
-
Exact and efficient analytical calculation of the accessible surface areas and their gradients for macromolecules
-
Fraczkiewicz, R. and Braun, W. (1998) Exact and efficient analytical calculation of the accessible surface areas and their gradients for macromolecules. J. Comp. Chem. 19, 319-333.
-
(1998)
J. Comp. Chem.
, vol.19
, pp. 319-333
-
-
Fraczkiewicz, R.1
Braun, W.2
-
31
-
-
0025344281
-
The program FANTOM for energy refinement of polypeptides and proteins using a Newton-Raphson minimizer in torsion angle space
-
Schaumann, T., Braun, W., and Wuthrich, K. (1990) The program FANTOM for energy refinement of polypeptides and proteins using a Newton-Raphson minimizer in torsion angle space. Biopolymers 29, 679-694.
-
(1990)
Biopolymers
, vol.29
, pp. 679-694
-
-
Schaumann, T.1
Braun, W.2
Wuthrich, K.3
-
32
-
-
0026076082
-
Empirical solvation models can be used to differentiate native from near-native conformations of bovine pancreatic trypsin inhibitor
-
Vila, J., Williams, R. L., Vasquez, M., and Scheraga, H. A. (1991) Empirical solvation models can be used to differentiate native from near-native conformations of bovine pancreatic trypsin inhibitor. Prof. Struct. Funct. Gen. 10, 199-218.
-
(1991)
Prof. Struct. Funct. Gen.
, vol.10
, pp. 199-218
-
-
Vila, J.1
Williams, R.L.2
Vasquez, M.3
Scheraga, H.A.4
-
33
-
-
0031557390
-
Factors affecting the ability of energy functions to discrimiate correct from incorrect folds
-
Park, B. H., Huang, E. S., and Levitt, M. (1997) Factors affecting the ability of energy functions to discrimiate correct from incorrect folds. J. Mol. Biol. 266, 831-846.
-
(1997)
J. Mol. Biol.
, vol.266
, pp. 831-846
-
-
Park, B.H.1
Huang, E.S.2
Levitt, M.3
-
34
-
-
0032488962
-
An all-atom distance dependent conditional probability discriminatory function for protein structure prediction
-
Samudrala, R. and Moult, J. (1998) An all-atom distance dependent conditional probability discriminatory function for protein structure prediction. J. Mol. Biol. 275, 895-916.
-
(1998)
J. Mol. Biol.
, vol.275
, pp. 895-916
-
-
Samudrala, R.1
Moult, J.2
-
35
-
-
0032929780
-
Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins
-
Simons, K. T., Riczinski, I., Kooperberg, C., Fox, B. A., Bystroff, C., and Baker, D. (1999) Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins. Proteins 34, 82-95.
-
(1999)
Proteins
, vol.34
, pp. 82-95
-
-
Simons, K.T.1
Riczinski, I.2
Kooperberg, C.3
Fox, B.A.4
Bystroff, C.5
Baker, D.6
-
36
-
-
0023339433
-
Distance geometry and related methods for protein structure determination from NMR data
-
Braun, W. (1987) Distance geometry and related methods for protein structure determination from NMR data. Q. Rev. Biophys. 19, 115-157.
-
(1987)
Q. Rev. Biophys.
, vol.19
, pp. 115-157
-
-
Braun, W.1
|