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Volumn 49, Issue 2, 2000, Pages 183-201

A New Method to localize and test the significance of incongruence: Detecting domain shuffling in the nuclear receptor superfamily

Author keywords

Character partitions; Exon shuffling; Gene family evolution; Incongruence; Molecular evolution; Nuclear receptors

Indexed keywords

METAZOA;

EID: 0034350428     PISSN: 10635157     EISSN: None     Source Type: Journal    
DOI: 10.1093/sysbio/49.2.183     Document Type: Article
Times cited : (57)

References (45)
  • 1
    • 0027167005 scopus 로고
    • Receptors for mammalian steroid hormones in microbes and plants
    • AGARWAL, M. K. 1993. Receptors for mammalian steroid hormones in microbes and plants. FEBS Lett. 322:207-10.
    • (1993) FEBS Lett. , vol.322 , pp. 207-210
    • Agarwal, M.K.1
  • 2
    • 0026578479 scopus 로고
    • The origin of nuclear receptor proteins: A single precursor distinct from other transcription factors
    • AMERO, S. A., R. H. KRETSINGER, N. D. MONCRIEF, K. R. YAMAMOTO, AND W. R. PEARSON. 1992. The origin of nuclear receptor proteins: A single precursor distinct from other transcription factors. Mol. Endocrinol. 6:3-7.
    • (1992) Mol. Endocrinol. , vol.6 , pp. 3-7
    • Amero, S.A.1    Kretsinger, R.H.2    Moncrief, N.D.3    Yamamoto, K.R.4    Pearson, W.R.5
  • 3
    • 0031371067 scopus 로고    scopus 로고
    • Multiple sources of character information and the phylogeny of Hawaiian drosopholids
    • BAKER, R. H., AND R. DESALLE. 1997. Multiple sources of character information and the phylogeny of Hawaiian drosopholids. Syst. Biol. 46:654-673.
    • (1997) Syst. Biol. , vol.46 , pp. 654-673
    • Baker, R.H.1    Desalle, R.2
  • 4
    • 0029618368 scopus 로고
    • Steroid hormone receptors: Many actors in search of a plot
    • BEATO, M., P. HERRLICH, AND G. SCHUTZ. 1995. Steroid hormone receptors: Many actors in search of a plot. Cell 83:851-857.
    • (1995) Cell , vol.83 , pp. 851-857
    • Beato, M.1    Herrlich, P.2    Schutz, G.3
  • 5
    • 43949160320 scopus 로고
    • Branch support and tree stability
    • BREMER, K. 1995. Branch support and tree stability. Cladistics 10:295-304.
    • (1995) Cladistics , vol.10 , pp. 295-304
    • Bremer, K.1
  • 6
    • 0025064121 scopus 로고
    • Steroid hormone regulation of the Achyla ambisexualis 85-kD heat shock protein, a component of the achyla steroid receptor complex
    • BRUNT, S. A., R. RIEHL, AND J. C. SILVER. 1990. Steroid hormone regulation of the Achyla ambisexualis 85-kD heat shock protein, a component of the achyla steroid receptor complex. Mol. Cell. Biol. 10:273-281.
    • (1990) Mol. Cell. Biol. , vol.10 , pp. 273-281
    • Brunt, S.A.1    Riehl, R.2    Silver, J.C.3
  • 7
    • 0032095588 scopus 로고    scopus 로고
    • Phylogeny of frogs of the Physalaemus pustulosus species group with an examination of data incongruence
    • CANNATTELLA, D. C., D. M. HILLIS, P. T. CHIPPINDALE, L. WEIGT, A. S. RAND, AND M. J. RYAN. 1998. Phylogeny of frogs of the Physalaemus pustulosus species group with an examination of data incongruence. Syst. Biol. 37:311-335.
    • (1998) Syst. Biol. , vol.37 , pp. 311-335
    • Cannattella, D.C.1    Hillis, D.M.2    Chippindale, P.T.3    Weigt, L.4    Rand, A.S.5    Ryan, M.J.6
  • 8
    • 0029897169 scopus 로고    scopus 로고
    • Rampant horizontal transfer and duplication of RUBISCO genes in eubacteria and plastids
    • DELWICHE, C. F., AND J. D. PALMER. 1996. Rampant horizontal transfer and duplication of RUBISCO genes in eubacteria and plastids. Mol. Biol. Evol. 13: 873-882.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 873-882
    • Delwiche, C.F.1    Palmer, J.D.2
  • 9
    • 0001546577 scopus 로고
    • Separate versus combined analysis of phylogenetic evidence
    • DE QUEIROZ, A., M. J. DONOGHUE, AND J. KIM. 1995. Separate versus combined analysis of phylogenetic evidence. Annu. Rev. Ecol. Syst. 26:657-681.
    • (1995) Annu. Rev. Ecol. Syst. , vol.26 , pp. 657-681
    • De Queiroz, A.1    Donoghue, M.J.2    Kim, J.3
  • 10
    • 0031350120 scopus 로고    scopus 로고
    • Process partitions, congruence and the independence of characters: Inferring relationships among closely related Hawaiian Drosophila from multiple gene regions
    • DESALLE, R., AND A. V. Z. BROWER. 1997. Process partitions, congruence and the independence of characters: Inferring relationships among closely related Hawaiian Drosophila from multiple gene regions. Syst. Biol. 46:751-764.
    • (1997) Syst. Biol. , vol.46 , pp. 751-764
    • Desalle, R.1    Brower, A.V.Z.2
  • 12
    • 0027501821 scopus 로고
    • Taxonomic congruence versus total evidence, and amniote morphology inferred from fossils, molecules and morphology
    • EERNISSE, D. J., AND A. G. KLUGE. 1993. Taxonomic congruence versus total evidence, and amniote morphology inferred from fossils, molecules and morphology. Mol. Biol. Evol. 10:11170-1195.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 11170-11195
    • Eernisse, D.J.1    Kluge, A.G.2
  • 15
    • 0023913120 scopus 로고
    • The steroid and thyroid hormone receptor superfamily
    • EVANS, R. M. 1988. The steroid and thyroid hormone receptor superfamily. Science 240:889-895.
    • (1988) Science , vol.240 , pp. 889-895
    • Evans, R.M.1
  • 16
    • 0029468060 scopus 로고
    • Constructing a significance test for incongruence
    • FARRIS, J. S., M. KALLERSJÖ, A. G. KLUGE, AND C. BULT. 1995. Constructing a significance test for incongruence. Syst. Biol. 44:570-572.
    • (1995) Syst. Biol. , vol.44 , pp. 570-572
    • Farris, J.S.1    Kallersjö, M.2    Kluge, A.G.3    Bult, C.4
  • 17
    • 0031966661 scopus 로고    scopus 로고
    • The structural basis of molecular adaptation
    • GOLDING, G. B., AND A. M. DEAN. 1998. The structural basis of molecular adaptation. Mol. Biol. Evol. 15:355-369.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 355-369
    • Golding, G.B.1    Dean, A.M.2
  • 18
    • 0029440036 scopus 로고
    • Transcription factors 3: Nuclear receptors
    • GRONEMEYER, H., AND V. LAUDET. 1995. Transcription factors 3: Nuclear receptors. Protein Profiles 2:1173-1351.
    • (1995) Protein Profiles , vol.2 , pp. 1173-1351
    • Gronemeyer, H.1    Laudet, V.2
  • 19
    • 0030328811 scopus 로고    scopus 로고
    • A likelihood ratio test to detect conflicting phylogenetic signal
    • HUELSENBECK, J. P., AND J. J. BULL. 1996. A likelihood ratio test to detect conflicting phylogenetic signal. Syst. Biol. 45:92-98.
    • (1996) Syst. Biol. , vol.45 , pp. 92-98
    • Huelsenbeck, J.P.1    Bull, J.J.2
  • 20
    • 84959806898 scopus 로고
    • A concern for evidence and a phylogenetic hypothesis of relationships among Epicrates (Boidae: Serpentes)
    • KLUGE, A. G. 1989. A concern for evidence and a phylogenetic hypothesis of relationships among Epicrates (Boidae: Serpentes). Syst. Zool. 38:7-25.
    • (1989) Syst. Zool. , vol.38 , pp. 7-25
    • Kluge, A.G.1
  • 21
    • 0000590136 scopus 로고    scopus 로고
    • Total evidence or taxonomic congruence: Cladistics or consensus classification
    • KLUGE, A. G. 1998. Total evidence or taxonomic congruence: Cladistics or consensus classification. Cladistics 14:151-158.
    • (1998) Cladistics , vol.14 , pp. 151-158
    • Kluge, A.G.1
  • 22
    • 0001324274 scopus 로고
    • Cladistics: What's in a word?
    • KLUGE, A. G., AND A. J. WOLF. 1993. Cladistics: What's in a word? Cladistics 9:183-199.
    • (1993) Cladistics , vol.9 , pp. 183-199
    • Kluge, A.G.1    Wolf, A.J.2
  • 23
    • 0028696608 scopus 로고
    • The comparison of morphological and molecular data in phylogenetic systematics
    • (B. Schierwater, B. Streit, G. P. Wagner, and R. DeSalle, eds.). Birhauswer Verlag, Basil, Switzerland
    • LARSON, A. 1994. The comparison of morphological and molecular data in phylogenetic systematics. Pages 371-390 in:-Molecular ecology and evolution: Approaches and applications (B. Schierwater, B. Streit, G. P. Wagner, and R. DeSalle, eds.). Birhauswer Verlag, Basil, Switzerland.
    • (1994) Molecular Ecology and Evolution: Approaches and Applications , pp. 371-390
    • Larson, A.1
  • 24
    • 0031451570 scopus 로고    scopus 로고
    • Evolution of the nuclear receptor superfamily: Early diversification from an ancestral orphan receptor
    • LAUDET, V. 1997. Evolution of the nuclear receptor superfamily: Early diversification from an ancestral orphan receptor. J. Mol. Endocrinol. 19:207-226.
    • (1997) J. Mol. Endocrinol. , vol.19 , pp. 207-226
    • Laudet, V.1
  • 25
    • 0026557977 scopus 로고
    • Evolution of the nuclear receptor gene superfamily
    • LAUDET, V., C. HANNI, J. COLL, F. CATZEFLIS, AND D. STEHELIN. 1992. Evolution of the nuclear receptor gene superfamily. EMBO J. 11:1003-1013.
    • (1992) EMBO J. , vol.11 , pp. 1003-1013
    • Laudet, V.1    Hanni, C.2    Coll, J.3    Catzeflis, F.4    Stehelin, D.5
  • 26
    • 0003421005 scopus 로고    scopus 로고
    • Sinauer, Sunderland, Massachusetts
    • LI, W-H. 1997. Molecular evolution. Sinauer, Sunderland, Massachusetts.
    • (1997) Molecular Evolution
    • Li, W.-H.1
  • 27
    • 0029562554 scopus 로고
    • The RXR heterodimers and orphan receptors
    • MANGLESDORF, D. J., AND R. M. EVANS. 1995. The RXR heterodimers and orphan receptors. Cell 83:841-850.
    • (1995) Cell , vol.83 , pp. 841-850
    • Manglesdorf, D.J.1    Evans, R.M.2
  • 29
    • 0000147290 scopus 로고
    • The implications of congruence in Menidia
    • MICKEVICH, M. F., AND J. S. FARRIS. 1981. The implications of congruence in Menidia. Syst. Zool. 30:351-370.
    • (1981) Syst. Zool. , vol.30 , pp. 351-370
    • Mickevich, M.F.1    Farris, J.S.2
  • 30
    • 0030346606 scopus 로고    scopus 로고
    • A congruence study of molecular and morphological data for eutherian mammals
    • MIYAMOTO, M. 1996. A congruence study of molecular and morphological data for eutherian mammals. Mol. Phylogenet. Evol. 6:373-390.
    • (1996) Mol. Phylogenet. Evol. , vol.6 , pp. 373-390
    • Miyamoto, M.1
  • 31
    • 0025302559 scopus 로고
    • Diversity and unity in the nuclear receptors: A terpenoid receptor superfamily
    • MOORE, D. D. 1990. Diversity and unity in the nuclear receptors: A terpenoid receptor superfamily. New Biol. 2:100-105.
    • (1990) New Biol. , vol.2 , pp. 100-105
    • Moore, D.D.1
  • 32
    • 0042592785 scopus 로고    scopus 로고
    • On simultaneous analysis
    • NIXON, K. C., AND J. M. CARPENTER. 1996. On simultaneous analysis. Cladistics 12:221-241.
    • (1996) Cladistics , vol.12 , pp. 221-241
    • Nixon, K.C.1    Carpenter, J.M.2
  • 33
  • 34
    • 0030311233 scopus 로고    scopus 로고
    • Data set incongruence and the phylogeny of crocodilians
    • POE, S. 1996. Data set incongruence and the phylogeny of crocodilians. Syst. Biol. 45:393-414.
    • (1996) Syst. Biol. , vol.45 , pp. 393-414
    • Poe, S.1
  • 35
    • 84952380109 scopus 로고
    • What can molecular and morphological markers tell us about plant hybridization?
    • RIESEBERG, L. H., AND N. C. ELLSTRAND. 1993. What can molecular and morphological markers tell us about plant hybridization? Crit. Rev. Plant Sci. 12:213-241.
    • (1993) Crit. Rev. Plant Sci. , vol.12 , pp. 213-241
    • Rieseberg, L.H.1    Ellstrand, N.C.2
  • 37
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • THOMPSON, J. D., D. G. HIGGINS, AND T. J. GIBSON. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 39
    • 0040465150 scopus 로고    scopus 로고
    • Molecular systematics of the nuclear receptors
    • Proc. EMBO Workshop, (Abstr.). Heidelberg: European Molecular Biology Organization
    • THORNTON, J., AND R. DESALLE. 1997. Molecular systematics of the nuclear receptors. Proc. EMBO Workshop, Struct. Funct. Nucl. Recept 1:71 (Abstr.). Heidelberg: European Molecular Biology Organization.
    • (1997) Struct. Funct. Nucl. Recept , vol.1 , pp. 71
    • Thornton, J.1    Desalle, R.2
  • 40
    • 0032190991 scopus 로고    scopus 로고
    • Evolution of the androgen receptor: Structure-function implications
    • THORNTON, J. W., AND D. B. KELLY. 1998. Evolution of the androgen receptor: Structure-function implications. Bioessays 20:860-869.
    • (1998) Bioessays , vol.20 , pp. 860-869
    • Thornton, J.W.1    Kelly, D.B.2
  • 41
    • 0029588203 scopus 로고
    • From embryogenesis to metamorphosis: Regulation and function of Drosophila nuclear receptor superfamily members
    • THUMMEL, C. S. 1995. From embryogenesis to metamorphosis: Regulation and function of Drosophila nuclear receptor superfamily members. Cell 83: 871-877.
    • (1995) Cell , vol.83 , pp. 871-877
    • Thummel, C.S.1
  • 42
    • 0029265578 scopus 로고
    • Elision: A method for accommodating multiple molecular sequence alignments with alignment-ambiguous sites
    • WHEELER, W. C., J. GATESY, AND R. DESALLE. 1995. Elision: A method for accommodating multiple molecular sequence alignments with alignment-ambiguous sites. Mol. Phylogenet. Evol. 4:1-9.
    • (1995) Mol. Phylogenet. Evol. , vol.4 , pp. 1-9
    • Wheeler, W.C.1    Gatesy, J.2    Desalle, R.3
  • 43
    • 0026560372 scopus 로고
    • Participation of non-zinc finger residues in DNA binding by two nuclear orphan receptors
    • WILSON, T. E., R. E. PAULS, K. A. PADGETT, AND J. MILBRANDT. 1992. Participation of non-zinc finger residues in DNA binding by two nuclear orphan receptors. Science 256:107-110.
    • (1992) Science , vol.256 , pp. 107-110
    • Wilson, T.E.1    Pauls, R.E.2    Padgett, K.A.3    Milbrandt, J.4
  • 45
    • 0022327612 scopus 로고
    • Steroid receptor regulated transcription of specific genes and gene networks
    • YAMAMOTO, K. R. 1985. Steroid receptor regulated transcription of specific genes and gene networks. Annu. Rev. Genet. 19:209-252.
    • (1985) Annu. Rev. Genet. , vol.19 , pp. 209-252
    • Yamamoto, K.R.1


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