Molecular and morphological data provide phylogenetic resolution at different hierarchical levels in Andira

Systematic Biology

Volumn 45, Issue 4, 1996, Pages 496-515

  Pennington, R Toby ^a  

^a ROYAL BOTANIC GARDEN EDINBURGH   (United Kingdom)

Author keywords

Andira; Bat dispersal; Data combination; Leguminosae; Rodent dispersal; Tropical trees

Indexed keywords

ANDIRA; FABACEAE; RODENTIA;

EID: 0030311277     PISSN: 10635157     EISSN: None     Source Type: Journal    
DOI: 10.1093/sysbio/45.4.496     Document Type: Article

References (64)

1. ADAMS, E. N. 1972. Consensus techniques and the comparison of taxonomic trees. Syst. Zool. 21:390-397.
2. ARCHIE, J. W. 1985. Methods of coding variable morphological features for numerical taxonomic analysis. Syst. Zool. 34:326-345.
3. ASHTON, P. S. 1969. Speciation amongst tropical forest trees: Some deductions in the light of recent evidence. Biol. J. Linn. Soc. Lond. 1:155-196.
4. BARRETT, M., M. J. DONOGHUE, AND E. SOBER. 1991. Against consensus. Syst. Zool. 40:486-493.
5. BENTHAM, G. 1837. Commentationes de leguminosarum generibus, pages 43-45. J. P. Sollinger, Vienna.
6. BENTHAM, G. 1839. De leguminosarum generibus commentationes. Ann. Mus. Wiener Naturgesch. 2(1):107-109.
7. BENTHAM, G. 1860. A synopsis of the Dalbergieae, a tribe of the Leguminosae. Proc. J. Linn. Soc. Bot. 4(suppl.):24-25, 118-123.
8. BENTHAM, G. 1862. Leguminosae 1, Papilionaceae, Andira Lam. Pages 291-299 in Flora brasiliensis, Volume 15 (C. F. P. von Martius, ed.). C. Wolf and Son, Munich.
9. BONDT, N. 1788. Dissertatio medica inauguralis de cortice Geoffraeae surinamensis. Leiden, The Netherlands.
10. BOUSQUET, J. S. H., S. H. STRAUSS, AND P. LI. 1992. Complete congruence between morphological and rbcL based molecular phylogenies in birches and related species (Betulaceae). Mol. Biol. Evol. 9:1076-1088.
11. BREMER, K. 1990. Combinable component consensus. Cladistics 6:369-372.
12. BRUNEAU, A., E. E. DICKSON, AND S. KNAPP. 1995. Congruence of chloroplast DNA restriction site characters with morphological and isozyme data in Solanum sect. Lasiocarpa. Can. J. Bot. 73:1151-1167.
13. BRUNEAU, A., AND J. J. DOYLE. 1993. Phylogenetic analysis of chloroplast DNA restriction site characters in Erythrina L (Phaseoleae: Leguminosae). Syst. Bot. 18:229-247.
14. BULL, J. J., J. P. HUELSENBECK, C. W. CUNNINGHAM, D. L. SWOFFORD, AND P. J. WADDELL. 1993. Partitioning and combining data in phylogenetic analysis. Syst. Biol. 42:384-397.
15. CHAPPILL, J. A. 1989. Quantitative characters in phylogenetic analysis. Cladistics 5:291-296.
16. CTFT (CENTRE TECHNIQUE FORESTIER TROPICAL). 1989. Bois des Dom-Tom. Tomel, Guyane. Nugentsur-Marne, Department du Cirad, France.
17. DE LIMA, H. C. 1991. Tribo Dalbergieae (Leguminosae Papilionoideae) - Morfologia dos frutos, sementes e plântulas e sua aplicação na sistemática. Arch. Jard. Bot. Rio de Janeiro 30:1-42.
18. DE PINNA, M. M. 1991. Concepts and tests of homology in the cladistic paradigm. Cladistics 7:367-394.
19. DE QUEIROZ, A. 1993. For consensus (sometimes). Syst. Biol. 42:368-372.
20. DONOGHUE, M. J., AND M. J. SANDERSON. 1992. The suitability of molecular and morphological evidence in reconstructing plant phylogeny. Pages 340-368 in Molecular systematics of plants (P. S. Soltis, D. E. Soltis and J. J. Doyle, eds.). Chapman and Hall, London.
21. DOYLE, J. J. 1992. Gene trees and species trees: Molecular systematics as one character taxonomy. Syst. Bot. 17:144-163.
22. EERNISSE, D. J., AND A. G. KLUGE. 1993. Taxonomic congruence versus total evidence, and amniote phylogeny inferred from fossils, molecules, and morphology. Mol. Biol. Evol. 10:1170-1195.
23. FARRIS, J. S. 1988. Hennig86, version 1.5. Distributed by the author, Port Jefferson Station, New York.
24. FARRIS, J. S. 1990. Phenetics in camouflage. Cladistics 6:91-100.
25. FEDOROV, A. A. 1966. The structure of the tropical rain forest and speciation in the humid tropics. J. Ecol. 54:1-11.
26. HILLIS, D. M. 1987. Molecular versus morphological approaches to systematics. Annu. Rev. Ecol. Syst. 18: 23-42.
27. JANZEN, D. H. 1981. The defenses of legumes against herbivores. Pages 951-978 in Advances in legume systematics, Part 2 (R. M. Polhill and P. H. Raven, eds.). Royal Botanic Gardens, Kew, England.
28. JANZEN, D. H., G. A. MILLER, J. HACKFORTH-JONES, C. M. POND, K. HOOPER, AND D. P. JANOS. 1976. Two Costa Rican bat-generated seed shadows of Andira inermis (Leguminosae). Ecology 57:1068-1075.
29. KIM, K.-J., AND R. K. JANSEN. 1994. Comparisons of phylogenetic hypotheses among different data sets in dwarf dandelions (Krigia, Asteraceae): Additional information from internal transcribed spacer sequences of nuclear ribosomal DNA. Plant Syst. Evol. 190:157-185.
30. KLUGE, A. G. 1989. A concern for evidence and a phylogenetic hypothesis of relationships among Epicrates (Boidae, Serpentes). Syst. Zool. 38:7-25.
31. KLUGE, A. G., AND A. J. WOLF. 1993. Cladistics: What's in a word? Cladistics 9:183-199.
32. LAVIN, M. 1993. Biogeography and systematics of Poitea (Leguminosae). Syst. Bot. Monogr. 37:1-87.
33. LEISHMAN, M. R., AND M. WESTOBY. 1994. The role of large seed size in shaded conditions: Experimental evidence. Funct. Ecol. 8:205-214.
34. LOUREIRO, A. A., AND M. F. DA SILVA. 1968. Catálogo das madeiras da Amazônia, Volume 2. Ministério do Interior, Belém, Brazil.
35. MATTOS, N. F. 1979. O gênero Andira Lam. (Leguminosae Papilionoideae) no Brasil. Acta Amazonica 9:241-266.
36. MICKEVICH, M. F., AND J. S. FARRIS. 1981. The implications of congruence in Menidia. Syst. Zool. 30:351-370.
37. MIYAMOTO, M. M. 1985. Consensus cladograms and general classifications. Cladistics 1:186-189.
38. MIYAMOTO, M. M., AND W. M. FITCH. 1995. Testing species phylogenies and phylogenetic methods with congruence. Syst. Biol. 44:64-76.
39. NIXON, K. C. 1992. Clados, version 1.2. Distributed by the author, Trumansberg, New York.
40. NIXON, K. C. 1993. Dada, version 0.86 beta test. Distributed by the author, Trumansberg, New York.
41. OMLAND, K. E. 1994. Character congruence between a molecular and a morphological phylogeny for dabbling ducks (Anas). Syst. Biol. 43:369-386.
42. PAGE, R. D. M. 1993. Component, version 2.0. Natural History Museum, London.
43. PATTERSON, C. 1982. Morphological characters and homology. Pages 21-74 in Problems of phylogenetic reconstruction (K. A. Joysey and A. E. Friday, eds.). Academic Press, London.
44. PENNINGTON, R. T. 1994. The taxonomy and molecular systematics of Andira. D.Phil. Thesis, Oxford Univ., Oxford, England.
45. PENNINGTON, R. T. 1995. Cladistic analysis of chloroplast DNA restriction site characters in Andira (Leguminosae: Dalbergieae). Am. J. Bot. 82:526-534.
46. PENNINGTON, R. T., AND H. C. DE LIMA. 1995. Two new species of Andira from Brazil and the influence of dispersal in determining their distributions. Kew Bull. 50:557-566.
47. PIMENTEL, R. A., AND R. RIGGINS. 1987. The nature of cladistic data. Cladistics 3:201-209.
48. PISO, W. G. 1648. De medicina medicini brasiliensi, page 81. Leiden, The Netherlands.
49. POLHILL, R. M. 1981. Dalbergieae. Pages 233-242 in Advances in legume systematics, Part 1 (R. M. Polhill and P. H. Raven, eds.). Royal Botanic Gardens, Kew, England.
50. RODRIGO, A. G., M. KELLY-BORGES, P. R. BERGQUIST, AND P. L. BERGQUIST. 1993. A randomisation test of the null hypothesis that two cladograms are sample estimates of a parametric phylogenetic tree. N.Z. J. Bot. 31:257-268.
51. SANDERSON, M. J., AND J. J. DOYLE. 1992. Reconstruction of organismal and gene phylogenies from data on multigene families: Concerted evolution, homoplasy and confidence. Syst. Biol. 41:4-17.
52. SANDERSON, M. J., AND J. J. DOYLE. 1993. Chloroplast DNA phylogenetic relationships in North American Astragalus L. (Fabaceae). Syst. Bot. 18:395-408.
53. SHAFFER, H. B., J. M. CLARK, AND F. KRAUS. 1991. When molecules and morphology clash: A phylogenetic analysis of North American ambystomatid salamanders (Caudata: Ambystomatidae). Syst. Zool. 40:284-303.
54. SMITH, J. F., AND K. J. SYTSMA. 1994. Molecules and morphology: Congruence of data in Columnea (Gesneriaceae). Plant Syst. Evol. 193:37-52.
55. STEVENS, P. F. 1991. Character states, morphological variation, and phylogenetic analysis: A review. Syst. Bot. 16:553-583.
56. SWOFFORD, D. L. 1991. When are phylogeny estimates from molecular and morphological data incongruent? Pages 295-333 in Phylogenetic analysis of DNA sequences (M. M. Miyamoto and J. Cracraft, eds.). Oxford Univ. Press, New York.
57. SWOFFORD, D. L. 1993. PAUP: Phylogenetic analysis using parsimony, version 3.1.1. Illinois Natural History Survey, Champaign.
58. THIELE, K. 1993. The holy grail of the perfect character: The cladistic treatment of morphometric data. Cladistics 9:275-304.
59. VALENCIA, R., H. BALSLEV, AND G. PAZ Y MIÑNO C. 1994. High tree alpha diversity in Amazonian Ecuador. Biodivers. Conserv. 3:21-28.
60. VAN ROOSEMALEN, M. G. M. 1985. Fruits of the Guianan flora. Institute of Systematic Botany, Utrecht Univ., The Netherlands.
61. WHITE, F. 1976. The underground forests of Africa: A preliminary review. Gard. Bull. 29:57-71.
62. WHITMORE, T. C. 1984. Tropical rain forests of the Far East, 2nd edition. Clarendon Press, Oxford, England.
63. WHITMORE, T. C. 1990. An introduction to tropical rain forests. Clarendon Press, Oxford, England.
64. WRIGHT, W. 1777. Description and use of the cabbage-bark tree of Jamaica. Philos. Trans. 67:507-512.