Burkholderia, a Genus Rich in Plant-Associated Nitrogen Fixers with Wide Environmental and Geographic Distribution

Applied and Environmental Microbiology

Volumn 67, Issue 6, 2001, Pages 2790-2798

  Estrada De Los Santos, Paulina ^a   Bustillos Cristales, Rocío ^a   Caballero Mellado, Jesús ^a  

^a INSTITUTO DE CIENCIAS FÍSICAS   (Mexico)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL PROTEIN;

ANGIOSPERM; ARTICLE; BACTERIAL GENE; BACTERIUM IDENTIFICATION; BURKHOLDERIA; CLASSIFICATION; COFFEE; GENETICS; GEOGRAPHY; ISOLATION AND PURIFICATION; MAIZE; METABOLISM; MEXICO; MICROBIOLOGY; NITROGEN FIXATION; PHENOTYPE; PLANT ROOT;

ANGIOSPERMS; BACTERIAL PROTEINS; BACTERIAL TYPING TECHNIQUES; BURKHOLDERIA; COFFEE; DNA, BACTERIAL; GENES, BACTERIAL; GEOGRAPHY; MEXICO; NITROGEN FIXATION; PHENOTYPE; PLANT ROOTS; SOIL MICROBIOLOGY; ZEA MAYS;

EID: 0035378204     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.67.6.2790-2798.2001     Document Type: Article

References (48)

1. Achouak, W., R. Christen, M. Barakat, M.-H. Martel, and T. Heulin. 1999. Burkholderia caribensis sp. nov., and exopolysaccharide-producing bacterium isolated from vertisol microaggregates in Martinique. Int. J. Syst. Bacteriol. 49:787-794.
2. Ausubel, F. M., R. Brent, R. E. Kingston, D. D. More, J. G. Seidman, J. A. Smith, and K. Struhl. 1987. Current protocols in molecular biology. John Wiley & Sons, Inc., New York, N.Y.
3. Balandreau, J., V. Viallard, B. Cournoyer, T. Coenye, S. Laevens, and P. Vandamme. 2001. Burkholderia cepacia genomovar III is a common plant-associated bacterium. Appl. Environ. Microbiol. 67:982-485.
4. Bauernfeind, A., I. Schneider, R. Jungwirth, and C. Roller. 1999. Discrimination of Burkholderia multivorans and Burkholderia vietnamiensis from Burkholderia cepacia genomovars I, III, and IV by PCR. J Clin. Microbiol. 37:1335-1339.
5. Bevivino, A. S. Sarrocco, C. Dalmastri, S. Tabacchioni, C. Cantale, and L. Chiarini. 1998. Characterization of a free-living maize-rhizosphere population of Burkholderia cepacia: effect of seed treatment on disease suppression and growth promotion of maize. FEMS Microbiol. Ecol. 27:225-237.
6. Burbage, D. A., and M. Sasser. 1982. A medium selective for Pseudomonas cepacia. Phytopathology 76:706.
7. Caballero-Mellado, J., and E. Martínez-Romero. 1994. Limited genetic diversity in the endophytic sugarcane bacterium Acetobacter diazotrophicus. Appl. Environ. Microbiol. 60:1532-1537.
8. Chiarini, L., A. Bevivino, S. Tabacchioni, and C. Dalmastri. 1998. Inoculation of Burkholderia cepacia. Pseudomonas fluorescens and Enterobacter sp. on Sorghum bicolor: root colonization and plant growth promotion of dual strain inocula. Soil Biol. Biochem. 30:81-87.
9. Daubaras, D. L., C. E. Danganan, A. Hübner, R. W. Ye, W. Hendrickson, and A. M. Chakrabarty. 1996. Biodegradation of 2,4,5-trichlorophenoxyacetic acid by Burkholderia cepacia strain ACI 100: evolutionary insight. Gene 179: 1-8.
10. Di Cello, F., A. Bevivino, L. Chiarini, R. Fani, D. Paffetti, S. Tabacchioni, and C. Dalmastri. 1997. Biodiversity of a Burkholderia cepacia population isolated from the maize rhizosphere at different plant growth stages. Appl. Environ. Microbiol. 63:4485-4493.
11. Döbereiner, J. 1993. History and new perspectives of diazotrophs in association with non-leguminous plants. Symbiosis 13:1-13.
12. Engelhard, M., T. Hurek, and B. Reinhold-Hurek. 2000. Preferential occurrence of diazotrophic endophytes. Azoarcus spp., in wild rice species and land races of Oryza sativa in comparison with modern races. Environ. Microbiol. 2:131-141.
13. Fries, M. R., J.-Z. Zhou, J. Chee-Sanford, and J. M. Tiedje. 1994. Isolation, characterization, and distribution of denitrifying toluene degraders from a variety of habitats. Appl. Environ. Microbiol. 60:2802-2810.
14. Fuentes-Ramírez, L. E., R. Bustillos-Cristales, A. Tapia-Hernández, T. Jiménez-Salgado, E. T. Wang, E. Martínez-Romero, and J. Caballero-Mellado. Novel nitrogen-fixing acetic acid bacteria, Gluconacetobacter johannae sp. nov., and Gluconacetobacter azotocaptans sp. nov., associated with coffee plants. Int. J. Syst. Evol. Microbiol., in press.
15. 2-fixing isolates from rice in Vietnam. Int. J. Syst. Bacteriol. 45:274-289.
16. Govan, J. R. W., J. Balandreau, and P. Vandamme. 2000. Burkholderia cepacia-friend and foe. ASM News 66:124-125.
17. Hebbar, K. P., M. H. Martel, and T. Heulin. 1998. Suppression of pre- and postemergence damping-off in corn by Burkholderia cepacia. Eur. J. Plant Pathol. 104:29-36.
18. Holmes, A., J. Govan, and R. Goldstein. 1998. Agricultural use of Burkholderia (Pseudomonas) cepacia: a threat to human health? Emerg. Infect. Dis. 4:221-227.
19. Jiménez-Salgado, T., L. E. Fuentes-Ramírez, A. Tapia-Hernández, M. A. Mascarúa-Esparza, E. Martínez-Romero, and J. Caballero-Mellado. 1997. Coffea arabica L., a new host plant for Acetobacter diazotrophicus, and isolation of other nitrogen-fixing acetobacteria. Appl. Environ. Microbiol. 63: 3676-3683.
20. Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680-685.
21. Laguerre, G., M.-R. Allard, F. Revoy, and N. Amarger. 1994. Rapid identification of rhizobia by restriction fragment length polymorphism analysts of PCR-amplitied 16S rRNA genes. Appl. Environ. Microbiol. 60:56-63.
22. Loganathan, P., R. Sunita, A. K. Parida, and S. Nair. 1999. Isolation and characterization of two genetically distant groups of Acetobacter diazotrophicus from a new host plant Eleusine coracana L. J. Appl. Microbiol. 87:167-172.
23. Martínez-Romero, E., and J. Caballero-Mellado. 1996. Rhizobium phylogenies and bacterial genetic diversity. Crit. Rev. Plant Sci. 15:113-140.
24. Mascarúa-Esparza, M. A., R. Villa-González, and J. Caballero-Mellado. 1988. Acetylene reduction and indoleacetic acid production by Azospirillum isolates from cactaceous plants. Plant Soil 106:91-95.
25. McLoughlin, T. J., J. P. Quinn, A. Bettermann, and R. Booklands. 1992. Pseudomonas cepacia suppression of sunflower wilt fungus and role of anti-fungal compounds in controlling the disease. Appl. Environ. Microbiol. 58:1760-1763.
26. Mueller, J. G., R. Devereux, D. L. Santavy, S. E. Lantz, S. G. Willis, and P. H. Pritchard. 1997. Phylogenetic and physiological compartment of PAH-degrading bacteria from geographically diverse soils. Antonie Leeuwenhoek 71:329-343.
27. Nacamulli, C. A. Bevivino, C. Dalmastri, S. Tabacchioni, and L. Chiarini. 1997. Perturbation of maize rhizosphere following seed bacterization with Burkholderia cepacia MC17. FEMS Microbiol. Ecol. 23:183-193.
28. Nei, M., and W. H. Li. 1979. Mathematical model for studying genetic variations in terms of restriction endonucleases. Proc. Natl. Acad. Sci. USA 76:5269-5273.
29. Quinto, C., H. de la Vega, M. Flores, J. Leemans, M. A. Cevallos, M. A. Pardo, R. Azpiroz, M. L. Girard, E. Calva, and R. Palacios. 1985. Nitrogenase reductase: a functional multigene family in Rhizobium phaseoli. Proc. Natl. Acad. Sci. USA 82:1170-1174.
30. Reinhold-Hurek, B., T. Hurek, M. Gillis, B. Huste, M. Vancanneyt, K. Kersters, and J. De Ley. 1993. Azoarcus gen. nov., nitrogen-fixing Proteobacteria associated with roots of Kallar grass (Leptochloa fusca (L) Kunth), and description of two species, Azoarcus indigens sp. nov. and Azoarcus communis sp. nov. Int. J. Syst. Bacteriol. 43:574-584.
31. Segonds, C., T. Heulin, N. Marty, and G. Chabanon. 1999. Differentiation of Burkholderia species by PCR-restriction fragment length polymorphism analysis of the 16S rRNA gene and application to cystic fibrosis isolates. J. Clin. Microbiol. 37:2201-2208.
32. Sneath, P. H. A., and R. R. Sokal. 1973. Numerical taxonomy. W. H. Freeman & Co., San Francisco, Calif.
33. Stackebrandt, E., and B. M. Goebel. 1994. Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44:846-849.
34. Staley, J. T. 1999. Bacterial biodiversity: a time for place. ASM News 65: 681-687.
35. Tabacchioni, S., A. Bevivino, L. Chiarini, P. Visca, and M. Del Gallo. 1993. Characteristics of two rhizosphere isolates of Pseudomonas cepacia and their potential plant-growth-promoting activity. Microb. Rel. 2:161-168.
36. Tapia-Hernández, A., M. R. Bustillos-Cristales, T. Jiménez-Salgado, J. Caballero-Mellado, and L. E. Fuentes-Ramirez. 2000. Natural endophytic occurrence of Acetobacter diazotrophicus in pineapple plants. Microb. Ecol. 39:49-55.
37. Trân Van, V., O. Berge, S. Ngo Ke, J. Balandreau, and T. Heulin. 2000. Repeated beneficial effects of rice inoculation with a strain of Burkholderia vietnamiensis on early and late yield component in low fertility sulphate acid soils of Vietnam. Plant Soil 218:273-284.
38. Trân Van, V., P. Mavingui, O. Berge, J. Balandreau, and T. Heulin. 1994. Promotion de croissance du riz inoculé par une bactérie fixatrice d'azote, Burkholderia vietnamiensis. isolée d'un sol sulfaté acide du Viêt-nam. Agronomie 14:697-707.
39. Vandamme, P., B. Holmes, M. Vancanneyt, T. Coenye, B. Hoste, R. Coopman, H. Revets, S. Lauwers, M. Gillis, K. Kersters, and J. R. W. Govan. 1997. Occurrence of multiple genomovars of Burkholderia cepacia in cystic fibrosis patients and proposal of Burkhulderia multivorans sp. nov. Int. J. Syst. Bacteriol. 47:1188-1200.
40. Vandamme, P., B. Pot, M. Gillis, P. de Vos, K. Kersters, and J. Swings. 1996. Polyphasic taxonomy, a consensus approach to bacterial systematics. Microbiol. Rev. 60:407-438.
41. van Rhijn, P., and J. Vanderleyden. 1995. The Rhizobium-plant symbiosis. Microbiol. Rev. 59:124-142.
42. Viallard, V., I. Poirier, B. Cournoyer, J. Haurat, S. Wiebkin, K. Ophel-Keller, and J. Balandreau. 1998. Burkholderia graminis sp. nov., a rhizospheric Burkholderia species, and reassessment of [Pseudomonas] phenazinium, [Pseudomonas] pyrrocinia, and [Pseudomonas] glathei as Burkholderia. Int. J. Syst. Bacteriol. 48:549-563.
43. Vidaver, A. K., M. P. Doyle, P. J. Gerone, C. F. Gonzalez, P. Hall, J. C. Hunter-Cevera, R. Loria, R. L. Newsome, S. H. Shore, and T. Wilkins. 1999. Burkholderia cepacia-friend or foe? ASM News 65:587.
44. Weisburg, W. G., S. M. Barns, D. A. Pelletier, and D. J. Lane. 1991. 16S ribosomal DNA amplification for phylogenetic study. J. Bacteriol. 173:697-703.
45. Yanni, Y. G., R. Y. Rizk, V. Corich, A. Squartini, K. Ninke, S. Philip-Hollingsworth, G. Orgambide, F. de Bruijn, J. Stoltzfus, D. Buckley, T. M. Scmidt, P. F. Mateos, J. K. Ladha, and F. B. Dazzo. 1997. Natural endophytic association between Rhizobium leguminosarum bv. trifolii and rice roots and assessment of its potential to promote rice growth. Plant Soil 194:99-114.
46. Young, J. P. W. 1992. Phylogenetic classification of nitrogen-fixing organisms, p. 43-86. In G. Stacey, R. H. Burris, and G. Evans (ed.), Biological nitrogen fixation. Chapman & Hall, New York, N.Y.
47. Zhang, H., S. Hanada, T. Shigematsu, K. Shibuya, Y. Kamagata, T. Kanagawa, and R. Kurane. 2000. Burkholderia kururiensis sp. nov., a trichloroethylene (TCE)-degrading bacterium isolated from an aquifer polluted with TCE. Int. J. Syst. Evol. Microbiol. 50:743-749.
48. Zhou, J., M. R. Fries, J. C. Chee-Sanford, and J. M. Tiedje. 1995. Phylogenetic analyses of a new group of denitrifiers capable of anaerobic growth on toluene and description of Azoarcus tolulyticus sp. nov. Int. J. Syst. Bacteriol. 45:500-506.