Biodegradation of 2,4,5-trichlorophenoxyacetic acid by Burkholderia cepacia strain AC1100: Evolutionary insight

Gene

Volumn 179, Issue 1, 1996, Pages 1-8

  Daubaras, Dayna L ^a   Danganan, Clyde E ^a   Hübner, Anette ^a   Ye, Rick W ^a   Hendrickson, William ^a   Chakrabarty, A M ^a  

^a UNIVERSITY OF ILLINOIS   (United States)

Author keywords

Environmental pollution; Gene recruitment; Hydroxyquinol 1,2 dioxygenase; Maleylacetate reductase; Multicomponent oxygenase; Pathway evolution; Replicons

Indexed keywords

2,4,5 TRICHLOROPHENOXYACETIC ACID; CHLORINATED HYDROCARBON;

ARTICLE; BACTERIAL GENETICS; BIODEGRADATION; BIOGENESIS; BURKHOLDERIA CEPACIA; CATABOLISM; CHROMOSOMAL LOCALIZATION; CONTROLLED STUDY; ENERGY RESOURCE; ENZYME MECHANISM; GENE FUNCTION; GENE LOCATION; GENE STRUCTURE; MICROBIAL GENETICS; NONHUMAN; PRIORITY JOURNAL;

2,4,5-TRICHLOROPHENOXYACETIC ACID; BIODEGRADATION, ENVIRONMENTAL; BURKHOLDERIA CEPACIA; DIOXYGENASES; GENES, BACTERIAL; GENOME, BACTERIAL; MULTIGENE FAMILY; OXIDOREDUCTASES; OXIDOREDUCTASES ACTING ON CH-CH GROUP DONORS; OXYGENASES;

BACTERIA (MICROORGANISMS); BURKHOLDERIA; BURKHOLDERIA CEPACIA;

EID: 0030574270     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(96)00326-5     Document Type: Article

References (40)

1. Batie, C.J., Ballou, D.P. and Correll, C.J. (1991) Phthalate dioxygenase reductase and related flavin-iron-sulfur containing electron transferases. In: Müller, F. (Ed.), Chemistry and Biochemistry of Flavoenzymes. CRC Press, Boca Raton, FL, pp. 544-545.
2. Buswell, J.A. and Eriksson, K.-E. (1979) Aromatic ring cleavage by the white-rot fungus Sporotrichum pulverulentum. FEBS Lett. 104, 258-260.
3. Chapman, P.J. and Ribbons, D.W. (1976) Metabolism of resorcinylic compounds by bacteria: alternative pathways for resorcinol catabolism in Pseudomonas putida. J. Bacteriol. 125, 985-998.
4. Chapman, P.J., Sangodkar, U.M.X. and Chakrabarty, A.M. (1987) 2,4,5-T degradation pathway in Pseudomonas cepacia AC1100. Abstracts of the 8th Annual Meeting of The Society for Environmental Toxicology and Chemistry, Pensacola, FL, p. 127.
5. Cheng, H.P. and Lessie, T.G. (1994) Multiple replicons constituting the genome of Pseudomonas cepacia 17616. J. Bacteriol. 176, 4034-4042.
6. Clarke, P.H. and Slater, J.H. (1986) Evolution of enzyme structure and function in Pseudomonas. In: Sokatch, J.R. (Ed.), The Bacteria. The Biology of Pseudomonas, Vol. 10. Academic Press, Orlando, FL, pp. 71-144.
7. Danganan, C.E., Ye, R.W., Daubaras, D.L., Xun, L. and Chakrabarty, A.M. (1994) Nucleotide sequence and functional analysis of the genes encoding 2,4,5-trichlorophenoxyacetic acid oxygenase in Pseudomonas cepacia AC1100. Appl. Environ. Microbiol. 60, 4100-4106.
8. Daubaras, D.L., Kitano, K. and Chakrabarty, A.M. (1992) Characterization of genes involved in 2,4,5-trichlorophenoxyacetic acid degradation by Pseudomonas cepacia AC1100. Abstracts of the 92nd General Meeting of the American Society of Microbiology, New Orleans, LA, pp. 341.
9. Daubaras, D.L., Hershberger, C.D., Kitano, K. and Chakrabarty, A.M. (1995) Sequence analysis of a gene cluster involved in the metabolism of 2,4,5-trichloro-phenoxyacetic acid by Burkholderia cepacia AC1100. Appl. Environ. Microbiol. 61, 1279-1289.
10. Davis, N.K., Greer, S., Jones-Mortimer, M.C. and Perham, R.N. (1982) Isolation and mapping of glutathione reductase-negative mutants of Escherichia coli K-12. J. Gen. Microbiol. 128, 1631-1634.
11. Fiandt, M., Szybalski, W. and Malamy, M.H. (1972) Polar mutations in lac, gal and phage lambda consist of a few IS-DNA sequences inserted with either orientation. Mol. Gen. Genet. 199, 223-231.
12. Frantz, B. and Chakrabarty, A.M. (1986) Degradative plasmids in Pseudomonas. In: Sokatch, J.R. (Ed.), The Bacteria. The Biology of Pseudomonas, Vol. 10. Academic Press, Orlando, FL, pp. 295-323.
13. Gaal, A. and Neujahr, H.Y. (1979) Metabolism of phenol and resorcinol in Trichosporon cutaneum. J. Bacteriol. 137, 13-21.
14. Gaal, A. and Neujahr, H.Y. (1980) Maleylacetate reductase from Trichosporon cutaneum. Biochem. J. 185, 783-786.
15. Ghadi, S.C. and Sangodkar, U.M.X. (1994) Identification of a metacleavage pathway for metabolism of phenoxyacetic acid and phenol in Pseudomonas cepacia AC1100. Biochem. Biophys. Res. Commun. 204, 983-993.
16. Ghosal, D. and You, I.S. (1988) Nucleotide homology and organization of chlorocatechol oxidation genes of plasmids pJP4 and pAC27. Mol. Gen. Genet. 211, 113-120.
17. Gray, G.L. and Xun, L. (1994) Preliminary biochemical characterization of the first step in the degradation of 2,4,5-trichlorophenoxyacetate by Pseudomonas cepacia AC1100. Abstracts of the 94th General Meeting of the American Society of Microbiology, Las Vegas, NV, p. 454.
18. Harayama, S., Rekik, M., Bairoch, A., Neidle, E.L. and Ornston, L.N. (1991) Potential DNA slippage structures acquired during evolutionary divergence of Acinetobacter calcoaceticus chromosomal benABC and Pseudomonas putida TOL pWW0 plasmid xylXYZ, genes encoding benzoate dioxygenases. J. Bacteriol. 173, 7540-7548.
19. Haugland, R.A., Sangodkar, U.M.X., Chakrabarty, A.M., Tomasek, P.H. and Sforra, P.R. (1987) Microbial degradation of synthetic chlorinated compounds. In Land disposal, remedial action, incineration and treatment of hazardous waste. US Environmental Protection Agency, Washington, DC.
20. Haugland, R.A., Sangodkar, U.M.X. and Chakrabarty, A.M. (1990) Repeated sequences including RS1100 from Pseudomonas cepacia AC1100 function as IS elements. Mol. Gen. Genet. 220, 222-228.
21. Haugland, R.A., Sangodkar, U.M.X., Sferra, P.R. and Chakrabarty, A.M. (1991) Cloning and characterization of a chromosomal DNA region required for growth on 2,4,5-T by Pseudomonas cepacia AC1100. Gene 100, 65-73.
22. Hendrickson, W., Hübner, a. and Kavanaugh-Black, A. (1996) Chromosome multiplicity in Burkholderia cepacia. In: Nakazawa, T., furukawa, K., Haas, D. and Silver, S. (Eds.), Molecular Biology of Pseudomonads. ASM Press, Washington, DC, pp. 259-269.
23. Karns, J.S., Duttagupta, S. and Chakrabarty, A.M. (1983) Regulation of 2,4,5-trichloro-phenoxyacetic acid and chlorophenol metabolism in Pseudomonas cepacia AC1100. Appl. Environ. Microbiol. 46, 1182-1186.
24. Kasberg, T., Daubaras, D.L., Chakrabarty, A.M., Kinzelt, D. and Reineke, W. (1995) Evidence that operons tcb, tfd, and clc encode maleylacetate reductase, the fourth enzyme of the modified ortho pathway. J. Bacteriol. 177, 3885-3889.
25. Kaschabek, S.R. and Reineke, W. (1993) Degradation of chloroaromatics: purification and characterization of maleylacetate reductase from Pseudomonas sp. strain B13. J. Bacteriol. 175, 6075-6081.
26. Kellogg, S.T., Chatterjee, D.K. and Chakrabarty, A.M. (1981) Plasmid assisted molecular breeding - new technique for enhanced biodegradation of persistent toxic chemicals. Science 214, 1133-1135.
27. Kilbane, J.J., Chatterjee, D.K., Karns, J.S., Kellogg, S.T. and Chakrabarty, A.M. (1982) Biodegradation of 2,4,5-trichlorophenoxyacetic acid by a pure culture of Pseudomonas cepacia. Appl. Environ. Microbiol. 44, 72-78.
28. Kilbane, J.J., Chatterjee, D.K. and Chakrabarty, A.M. (1983) Detoxification of 2,4,5-trichlorophenoxyacetic acid from contaminated soil by Pseudomonas cepacia. Appl. Environ. Microbiol. 45, 1697-1700.
29. Kozyreva, L.P., Shurukhin, Y.U., Finkel'shtein, Z.I., Baskunov, B.P. and Golovleva, L.A. (1993) Metabolism of the herbicide 2,4-D by a Nocardioides simplex strain. Mikrobiologiya 62, 78-85.
30. Milkman, R. (1994) An Escherichia coli homologue of eukaryotic potassium channel proteins. Proc. Natl. Acad. Sci. USA 91, 3510-3514.
31. Neidle, E.L., Hartnett, C., Ornston, L.N., Bairoch, A., Rekik, M. and Harayama, S. (1991) Nucleotide sequences of the Acinetobacter calcoaceticus benABC genes for benzoate 1,2-dioxygenase reveal evolutionary relationships among multicomponent oxygenases. J. Bacteriol. 173, 5385-5395.
32. Perkins, E.J.,. Gordon, M.P, Caceres, O. and Lurquin, P.F. (1990) Organization and sequence analysis of the 2,4-dichlorophenol hydroxylase and dichlorocatechol oxidative operons of plasmid pJP4. J. Bacteriol. 172, 2351-2359.
33. Sangodkar, U.M.X., Chapman, P.J. and Chakrabarty, A.M. (1988) Cloning, physical mapping and expression of chromosomal genes specifying degradation of the herbicide 2,4,5-T by Pseudomonas cepacia AC1100. Gene 71, 267-277.
34. Sangodkar, U.M.X., Aldrich, T.L., Haughland, R.A., Johnson, J., Rothmel, R.K., Chapman, P.J. and Chakrabarty, A.M. (1989) Molecular basis of biodegradation of chloroaromatic compounds. Acta Biotechnol. 9, 301-316.
35. Seibert, V., Stadler-Fritzsche, K. and Schlomann, M. (1993) Purification and characterization of maleylacetate reductase from Alcaligenes eutrophus JMP134 (pJP4). J. Bacteriol. 175, 6745-6754.
36. Tomasek, P.H., Frantz, B., Chatterjee, D.K. and Chakrabarty, A.M. (1986) Genetic and molecular basis of the microbial degradation of herbicides and pesticides. In: Augustine, P.C., Danforth, H.D. and Bakst, M.R. (Eds.), Biotechnology for Solving Agricultural Problems. Martinus Nijhoff, Dordrecht, pp. 355-368.
37. Tomasek, P.H., Frantz, B., Sangodkar, U.M.X., Haugland, R.A. and Chakrabarty, A.M. (1989) Characterization and nucleotide sequence determination of a repeat element isolated from a 2,4,5-T degrading strain of Pseudomonas cepacia. Gene 76, 227-238.
38. Tomasi, I., Artaud, I., Bertheau, Y. and Mansuy, D. (1995) Metabolism of polychlorinated phenols by Pseudomonas cepacia AC1100: determination of the first two steps and specific inhibitory effect of methimazole. J. Bacteriol. 177, 307-311.
39. Van der Meer, J.R., Eggen, R.I.L., Zehnder, A.J.B, and De Vos, W.M. (1991) Sequence analysis of the Pseudomonas sp. strain P51 tcb gene cluster, which encodes metabolism of chlorinated catechols: evidence for specialization of catechol 1,2-dioxygenases for chlorinated substrates. J. Bacteriol. 173, 2425-2434.
40. Zaborina, O., Latus, M., Eberspacher, J., Golovleva, L.A. and Lingens, F. (1995) Purification and characterization of 6-chlorohydroxyquinol 1,2-dioxygenase from Streptomyces rochei 303: comparison with an analogous enzyme from Azotobacter sp. strain GP1. J. Bacteriol. 177, 229-234.