High prokaryote diversity and analysis of community structure in mobile mud deposits off French Guiana: Identification of two new bacterial candidate divisions

FEMS Microbiology Ecology

Volumn 37, Issue 3, 2001, Pages 197-209

  Madrid, Vanessa M ^a   Aller, Josephine Y ^a   Aller, Robert C ^a   Chistoserdov, Andrei Y ^a  

^a STONY BROOK UNIVERSITY   (United States)

Author keywords

16S rDNA library; Archaeal diversity; Bacterial diversity; Mobile mud sediment

Indexed keywords

CARBON; IRON; SULFATE; SULFIDE; SULFUR;

BACTERIUM; COASTAL SEDIMENT; COMMUNITY STRUCTURE; GENETIC ANALYSIS; MICROBIAL COMMUNITY;

ACTINOBACTERIA; ARCHAEBACTERIUM; ARTICLE; BACTERIUM IDENTIFICATION; BACTEROIDES; BIODIVERSITY; CONTROLLED STUDY; CRENARCHAEOTA; CYANOBACTERIUM; DNA SEQUENCE; FLEXIBACTERACEAE; FRENCH GUIANA; GELIDIBACTER ALGENS; GRAM NEGATIVE BACTERIUM; GRAM POSITIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANCTOMYCETES; PRIORITY JOURNAL; PROKARYOTE; RUEGERIA; SEQUENCE ANALYSIS; SOIL; SULFATE REDUCING BACTERIUM; SULFITOBACTER; UNINDEXED SEQUENCE; VERRUCOMICROBIUM;

FRENCH GUIANA;

ACTINOBACTERIA; ARCHAEA; BACTERIA (MICROORGANISMS); BACTEROIDES; CRENARCHAEOTA; CYANOBACTERIA; CYTOPHAGA; DELTAPROTEOBACTERIA; FLEXIBACTER; GELIDIBACTER ALGENS; PLANCTOMYCETES; POSIBACTERIA; PROKARYOTA; PROTEOBACTERIA; RUEGERIA; SULFITOBACTER;

EID: 0035216085     PISSN: 01686496     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-6496(01)00165-9     Document Type: Article

References (61)

1. Decomposition and recycling of organic matter in muds of the Gulf of Papua, northern Coral Sea
2. Mobile deltaic and continental shelf muds as suboxic, fluidized bed reactors
3. Nature of sediment accumulation on the Amazon continental shelf
4. Seasonal and spatial patterns of deeply buried calanoid copepods on the Amazon Shelf: Evidence for periodic erosional/depositional cycles
5. Remineralization rates, recycling, and storage of carbon in Amazon shelf sediments
6. Loss of organic matter from riverine particles in deltas
7. Origins and processing of organic matter in the Amazon River as indicated by carbohydrates and amino acids
8. Role of riverine mangrove forests in organic carbon export to the tropical coastal ocean: A preliminary mass balance for the Fly Delta (Papua New Guinea)
9. Surface area control of organic carbon accumulation in continental shelf sediments
10. Relationships between mineral surfaces and organic carbon concentrations in soils and sediments
11. Origin of Amazon mudbanks along the northeastern coast of South America
12. Physical process and fine-grained sediment dynamics, coast of Surinam, South America
13. Migration of mud banks and changing coastline in French Guyana
14. The distribution and seasonal characteristics of benthic communities on the Amazon shelf as indicators of physical processes
15. Shewanella amazonensis sp. nov., a novel metal-reducing facultative anaerobe from Amazonian shelf muds
16. Mangrove forest structure and productivity in the Fly River Estuary, Papua New Guinea
17. Early diagenetic processes in Gulf of Papua inner shelf muds
18. Molecular analysis of microbial communities in mobile deltaic muds of Southeastern Papua New Guinea
19. Changes in the microbial community in Japan Trench sediment from a depth of 6292 m during cultivation without decompression
20. Microbial diversity in Nankai Trough sediments at a depth of 3, 843 m
21. Bacterial diversity in the deep-sea sediments from different depths
22. Microbial diversity in sediments collected from the deepest cold-seep area, the Japan Trench
23. Phylogenetic diversity of marine coastal picoplankton 16S DNA genes cloned from the continental shelf off Cape Hatteras, North Carolina
24. Bacterial diversity among small-subunit rRNA gene clones and cellular isolates from the same seawater sample
25. + in marine and freshwaters
26. Ferrozine - A new spectrophotometric reagent for iron
27. Spectrophotometric determinmation of hydrogen sulfide in natural waters
28. The use of Pb-210 geochronology as a sedimentological tool: Application to the Washington continental shelf
29. Bias in template-to-product ratios in multitemplate PCR
30. Molecular microbial diversity of an agricultural soil in Winsconsin
31. The RDP (Ribosomal Database Project) continues
32. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
33. The nonconcept of species diversity: A critique and alternative parameters
34. Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
35. Unusual bacterioplankton community structure in ultra-oligotrophic lake Crater Lake
36. Recovery and phylogenetic analysis of archaeal rRNA sequences from continental shelf sediments
37. Sphingomonas alaskensis sp. nov., a dominant organism from a marine oligotrophic environment
38. Phylogenetic position of the marine subdivision of Agrobacterium species based on 16S rRNA sequence analysis
39. Sulfitobacter mediterraneus sp. nov., a new sulfite-oxidizing member of the α-Proteobacteria
40. Octadecabacter arcticus gen. nov., sp. nov., and O. antarcticus, sp. nov., non-pigmented, psychrophilic gas vacuolate bacteria from polar sea ice and water
41. Phylogenetic diversity of bacterial symbionts of Solemya hosts based on comparative sequence analysis of 16S rRNA genes
42. Beggiatoa, Thiothrix, and Thioploca
43. Phylogenetic analysis of dissimilatory Fe(III)-reducing bacteria
44. Detection and in situ identification of representatives of a widely distributed new bacterial phylum
45. Novel psychrobacter species from Antarctic ornithogenic soils
46. 'Candidatus Microthrix parvicella', a filamentous bacterium from activated sludge sewage treatment plants
47. Inter- and intraspecific phylogenetic analysis of the genus Nocardioides and related taxa based on 16S rDNA sequences
48. Assignment of the genera Planctomyces and Pirella to a new family Planctomycetaceae fam. nov. and description of the order Planctomycetales ord. nov.
49. Nearly identical 16S rRNA sequences recovered from lakes in North America and Europe indicate the existence of clades of globally distributed freshwater Bacteria
50. A phylogenetic tree of 16S rRNA sequences from sulfate-reducing bacteria in a sandy marine sediment
51. A polyphasic approach to study the diversity and vertical distribution of sulfur-oxidizing Thiomicrospira species in coastal sediments of the German Wadden Sea
52. Phylogenetic analysis of the bacterial communities in marine sediments
53. High bacterial diversity in permanently cold marine sediments
54. Characterization of bacterial communities in the anoxic zone of the Cariaco Basin
55. Sources and sinks of sediment to the Amazon margin: The Amapa coast
56. Bacterial community structure associated with a dimethylsulfoniopropionate-producing North Atlantic algal bloom
57. A preliminary study of sedimentation in the tidally dominated Fly River delta, Gulf of Papua
58. Carbon-isotope composition of sediments from the Gulf of Papua
59. Bacterial diversity of a Carolina Bay as determined by 16S rRNA gene analysis: Confirmation of novel taxa
60. Diversity and community structure within anoxic sediment from marine salinity meromictoc lakes and a coastal meromictic marine basin, Vestfold Hills, Eastern Antarctica