A fully automatic evolutionary classification of protein folds: Dali domain dictionary version 3

Nucleic Acids Research

Volumn 29, Issue 1, 2001, Pages 55-57

  Dietmann, Sabine ^a   Park, Jong ^a   Notredame, Cedric ^b   Heger, Andreas ^a   Lappe, Michael ^a   Holm, Liisa ^a  

^a EUROPEAN BIOINFORMATICS INSTITUTE   (United Kingdom)

^b CNRS Aix Marseille University   (France)

Author keywords

[No Author keywords available]

Indexed keywords

GLOBULAR PROTEIN; PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; AUTOMATION; CLASSIFICATION; COMPUTER PROGRAM; CONTROLLED STUDY; DATA BASE; INFORMATION PROCESSING; MOLECULAR EVOLUTION; ONLINE SYSTEM; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN FAMILY; PROTEIN FOLDING; PROTEIN LOCALIZATION; PROTEIN MOTIF; PROTEIN SECONDARY STRUCTURE; PROTEIN STRUCTURE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; STRUCTURE ANALYSIS; TAXONOMY;

EID: 0035167572     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/29.1.55     Document Type: Article

References (12)

1. Mapping the protein universe
2. SCOP: A Structural Classification of Proteins database
3. The CATH Database provides insights into protein structure/function relationships
4. MMDB: Entrez's 3D structure database
5. Dictionary of recurrent domains in protein structures
6. Recognition of analogous and homologous protein folds-assessment of prediction success and associated alignment accuracy using empirical substitution matrices
7. Protein structure comparison using the Markov transition model of evolution
8. Evolution of protein sequences and structures
9. T-Coffee: A novel method for fast and accurate multiple sequence alignment
10. Crystal structures of Bacillus caldevelox arginase in complex with substrate and inhibitors reveal new insights into activation, inhibition and catalysis in the arginase superfamily
11. Structure of a histone deacetylase homologue bound to the TSA and SAHA inhibitors
12. MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures