메뉴 건너뛰기




Volumn 7, Issue 4, 1999, Pages 435-448

Crystal structures of Bacillus caldovelox arginase in complex with substrate and inhibitors reveal new insights into activation, inhibition and catalysis in the arginase superfamily

Author keywords

Arginine hydrolysis; Catalytic mechanism; Crystal structure; Ligand binding; Manganese enzyme; Nitrogen metabolism

Indexed keywords

ARGINASE;

EID: 0033561427     PISSN: 09692126     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0969-2126(99)80056-2     Document Type: Article
Times cited : (131)

References (38)
  • 3
    • 0343554767 scopus 로고    scopus 로고
    • Human type II arginase: Sequence analysis and tissue-specific expression
    • Morris, S.M. Jr., Bhamidipati, D. & Kepka-Lenhart, D. (1997). Human type II arginase: Sequence analysis and tissue-specific expression. Gene 193, 157-161.
    • (1997) Gene , vol.193 , pp. 157-161
    • Morris S.M., Jr.1    Bhamidipati, D.2    Kepka-Lenhart, D.3
  • 4
    • 0028170690 scopus 로고
    • ω-hydroxy-L-arginine, an intermediate in the L-arginine to nitric oxide, is a strong inhibitor of liver and macrophage arginase
    • ω-hydroxy-L-arginine, an intermediate in the L-arginine to nitric oxide, is a strong inhibitor of liver and macrophage arginase. Biochem. Biophys. Res. Commun. 203, 1614-1621.
    • (1994) Biochem. Biophys. Res. Commun. , vol.203 , pp. 1614-1621
    • Boucher, J.L.1    Mansuy, D.2
  • 5
    • 0030900567 scopus 로고    scopus 로고
    • Hyperargininemia presenting as persistent neonatal jaundice and hepatic cirrhosis
    • Braga, A.C., Vilarinho, L., Ferreira, E. & Rocha, H. (1997). Hyperargininemia presenting as persistent neonatal jaundice and hepatic cirrhosis. J. Pediatr. Gastroenterol. Nutr. 24, 218-221.
    • (1997) J. Pediatr. Gastroenterol. Nutr. , vol.24 , pp. 218-221
    • Braga, A.C.1    Vilarinho, L.2    Ferreira, E.3    Rocha, H.4
  • 6
    • 0026746741 scopus 로고
    • Three novel mutations in the liver-type arginase gene in three unrelated Japanese patients with argininemia
    • Uchino, T., et al., & Matsuda, I. (1992). Three novel mutations in the liver-type arginase gene in three unrelated Japanese patients with argininemia. Am. J. Hum. Genet. 51, 1406-1412.
    • (1992) Am. J. Hum. Genet. , vol.51 , pp. 1406-1412
    • Uchino, T.1    Matsuda, I.2
  • 7
    • 0028275089 scopus 로고
    • On the evolution of arginases and related enzymes
    • Ouzounis, C.A. & Kyrpides, N.C. (1994). On the evolution of arginases and related enzymes. J. Mol. Evol. 39, 101-104.
    • (1994) J. Mol. Evol. , vol.39 , pp. 101-104
    • Ouzounis, C.A.1    Kyrpides, N.C.2
  • 9
    • 0020714525 scopus 로고
    • Catalytically active monomer forms of immobilized arginase
    • Aguirre, R. & Kasche, V. (1983). Catalytically active monomer forms of immobilized arginase. Eur. J. Biochem. 130, 373-381.
    • (1983) Eur. J. Biochem. , vol.130 , pp. 373-381
    • Aguirre, R.1    Kasche, V.2
  • 11
    • 0029962708 scopus 로고    scopus 로고
    • Structure of a unique binuclear manganese cluster in arginase
    • Kanyo, Z.F., Scolnick, L.R., Ash, D.E. & Christianson, D.W. (1996). Structure of a unique binuclear manganese cluster in arginase. Nature 383, 554-557.
    • (1996) Nature , vol.383 , pp. 554-557
    • Kanyo, Z.F.1    Scolnick, L.R.2    Ash, D.E.3    Christianson, D.W.4
  • 12
    • 0032499658 scopus 로고    scopus 로고
    • L-Arginine binding to liver arginase requires proton transfer to gateway residue His 141 and coordination of the guanidinium group to the dimanganese (II,II) center
    • Khangulov, S.V., Sossong, T.M. Jr., Ash, D.E. & Dismukes, G.C. (1998). L-Arginine binding to liver arginase requires proton transfer to gateway residue His 141 and coordination of the guanidinium group to the dimanganese (II,II) center. Biochemistry 37, 8539-8550.
    • (1998) Biochemistry , vol.37 , pp. 8539-8550
    • Khangulov, S.V.1    Sossong T.M., Jr.2    Ash, D.E.3    Dismukes, G.C.4
  • 14
    • 0025831611 scopus 로고
    • Characterisation of arginase from the extreme thermophile Bacillus caldovelox
    • Patchett, M.L., Daniel, R.M. & Morgan, H.W. (1991 ). Characterisation of arginase from the extreme thermophile Bacillus caldovelox. Biochim. Biophys. Acta 1077, 291-298.
    • (1991) Biochim. Biophys. Acta , vol.1077 , pp. 291-298
    • Patchett, M.L.1    Daniel, R.M.2    Morgan, H.W.3
  • 15
    • 0024246956 scopus 로고
    • Surface, subunit interfaces and interior of oligomeric proteins
    • Janin, J., Miller, S. & Chothia, C. (1988). Surface, subunit interfaces and interior of oligomeric proteins. J. Mol. Biol. 204, 155-164.
    • (1988) J. Mol. Biol. , vol.204 , pp. 155-164
    • Janin, J.1    Miller, S.2    Chothia, C.3
  • 16
    • 0015222647 scopus 로고
    • The interpretation of protein structures: Estimation of static accessibility
    • Lee, B. & Richards, F.M. (1971). The interpretation of protein structures: Estimation of static accessibility. J. Mol. Biol. 55, 379-400.
    • (1971) J. Mol. Biol. , vol.55 , pp. 379-400
    • Lee, B.1    Richards, F.M.2
  • 17
    • 0016294959 scopus 로고
    • Control of ornithine carbamoyltransferase activity by arginase in Bacillus subtilis
    • Issaly, I.M. & Issaly, A.S. (1974). Control of ornithine carbamoyltransferase activity by arginase in Bacillus subtilis. Eur. J. Biochem. 49, 485-495.
    • (1974) Eur. J. Biochem. , vol.49 , pp. 485-495
    • Issaly, I.M.1    Issaly, A.S.2
  • 18
    • 0016246625 scopus 로고
    • Interaction between arginase and L-ornithine carbamoyltransferase in Saccharomyces cerevisiae
    • Penninckx, M., Simon, J.P. & Wiame, J.M. (1974). Interaction between arginase and L-ornithine carbamoyltransferase in Saccharomyces cerevisiae. Eur. J. Biochem. 49, 429-442.
    • (1974) Eur. J. Biochem. , vol.49 , pp. 429-442
    • Penninckx, M.1    Simon, J.P.2    Wiame, J.M.3
  • 19
    • 0030848844 scopus 로고    scopus 로고
    • Altering the binuclear manganese cluster of arginase diminishes thermostability and catalytic function
    • Scolnick, L.R., Kanyo, Z.F., Cavalli, R.C., Ash, D.E. & Christianson, D.W. (1997). Altering the binuclear manganese cluster of arginase diminishes thermostability and catalytic function. Biochemistry 36, 10558-10565.
    • (1997) Biochemistry , vol.36 , pp. 10558-10565
    • Scolnick, L.R.1    Kanyo, Z.F.2    Cavalli, R.C.3    Ash, D.E.4    Christianson, D.W.5
  • 20
    • 0025299887 scopus 로고
    • Occurrence and role of cis peptide bonds in protein structures
    • Stewart, D.E., Sarkar, A. & Wampler, J.E. (1990). Occurrence and role of cis peptide bonds in protein structures. J. Mol. Biol. 214, 253-260.
    • (1990) J. Mol. Biol. , vol.214 , pp. 253-260
    • Stewart, D.E.1    Sarkar, A.2    Wampler, J.E.3
  • 21
    • 0028351902 scopus 로고
    • Three-dimensional structures of two plant β glucan endohydrolases with distinct substrate specificities
    • Varghese, J.N., Garrett, T.P.J., Colman, P.M., Chen, L. & Hoj, P.B. (1994). Three-dimensional structures of two plant β glucan endohydrolases with distinct substrate specificities. Proc. Natl Acad. Sci. USA 91, 2785-2789.
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 2785-2789
    • Varghese, J.N.1    Garrett, T.P.J.2    Colman, P.M.3    Chen, L.4    Hoj, P.B.5
  • 22
    • 0031568850 scopus 로고    scopus 로고
    • Structure of a human lysosomal sulfatase
    • Bond, C.S., et al., & Guss, J.M. (1997). Structure of a human lysosomal sulfatase. Structure 5, 277-289.
    • (1997) Structure , vol.5 , pp. 277-289
    • Bond, C.S.1    Guss, J.M.2
  • 23
    • 0013513777 scopus 로고    scopus 로고
    • PhD Thesis, Department of Chemistry, University of Pennsylvania, PA.
    • Kanyo, Z. (1998). The Structure of Rat Liver Arginase. PhD Thesis, Department of Chemistry, University of Pennsylvania, PA.
    • (1998) The Structure of Rat Liver Arginase
    • Kanyo, Z.1
  • 24
    • 0030857696 scopus 로고    scopus 로고
    • EXAFS comparison of the dimanganese core structures of manganese catalase, arginase and manganese-substituted ribonucleotide reductase and hemerythrin
    • Stemmler, T.L., Penner-Hahn, J.E. & et al., (1997). EXAFS comparison of the dimanganese core structures of manganese catalase, arginase and manganese-substituted ribonucleotide reductase and hemerythrin. Biochemistry 36, 9847-9858.
    • (1997) Biochemistry , vol.36 , pp. 9847-9858
    • Stemmler, T.L.1    Penner-Hahn, J.E.2
  • 25
    • 0030768666 scopus 로고    scopus 로고
    • 2-arginase by borate leads to the design of a transition-state analogue inhibitor, 2(S)-amino-6-boronhexanoic acid
    • 2-arginase by borate leads to the design of a transition-state analogue inhibitor, 2(S)-amino-6-boronhexanoic acid. J. Am. Chem. Soc. 119, 8107-8108.
    • (1997) J. Am. Chem. Soc. , vol.119 , pp. 8107-8108
    • Baggio, R.1    Christianson, D.W.2
  • 26
    • 0028108006 scopus 로고
    • Mutagenesis of rat liver arginase expressed in Escherichia coli: Role of conserved histidines
    • Cavalli, R.C., Burke, C.J., Kawamoto, S., Soprano, D.R. & Ash, D.E. (1994). Mutagenesis of rat liver arginase expressed in Escherichia coli: Role of conserved histidines. Biochemistry 33, 10652-10657.
    • (1994) Biochemistry , vol.33 , pp. 10652-10657
    • Cavalli, R.C.1    Burke, C.J.2    Kawamoto, S.3    Soprano, D.R.4    Ash, D.E.5
  • 27
    • 0032584215 scopus 로고    scopus 로고
    • Structure and mechanism of a proline-specific aminopeptidase from Escherichia coli
    • Wilce, M.C.J., Wilce, J.A. & et al., (1998). Structure and mechanism of a proline-specific aminopeptidase from Escherichia coli. Proc. Natl Acad. Sci. USA 95, 3472-3477.
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 3472-3477
    • Wilce, M.C.J.1    Wilce, J.A.2
  • 28
    • 85012636256 scopus 로고
    • The regulation of arginine metabolism in Saccharomyces cerevisiae: Exclusion mechanisms
    • Wiame, J.-M. (1971). The regulation of arginine metabolism in Saccharomyces cerevisiae: Exclusion mechanisms. Curr. Top. Cell Regul. 4, 1-39.
    • (1971) Curr. Top. Cell Regul. , vol.4 , pp. 1-39
    • Wiame, J.-M.1
  • 29
    • 0029899822 scopus 로고    scopus 로고
    • The cloning, expression and crystallisation of a thermostable arginase
    • Bewley, M.C., Lott, J.S., Baker, E.N. & Patchett, M.L. (1996). The cloning, expression and crystallisation of a thermostable arginase. FEBS Lett. 386, 215-218.
    • (1996) FEBS Lett. , vol.386 , pp. 215-218
    • Bewley, M.C.1    Lott, J.S.2    Baker, E.N.3    Patchett, M.L.4
  • 30
    • 0014432781 scopus 로고
    • Solvent content of protein crystals
    • Matthews, B.W. (1968). Solvent content of protein crystals. J. Mol. Biol. 33, 491-493.
    • (1968) J. Mol. Biol. , vol.33 , pp. 491-493
    • Matthews, B.W.1
  • 31
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • Otwinowski, Z. & Minor, W. (1997). Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-326.
    • (1997) Methods Enzymol. , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 32
    • 84920325457 scopus 로고
    • AMoRe: An automated package for molecular replacement
    • Navaza, J. (1994). AMoRe: An automated package for molecular replacement. Acta Crystallogr. A 50, 157-163.
    • (1994) Acta Crystallogr. A , vol.50 , pp. 157-163
    • Navaza, J.1
  • 34
    • 79952608525 scopus 로고
    • Accurate bond and angle parameters for X-ray protein structure refinement
    • Engh, R. & Huber, R. (1991). Accurate bond and angle parameters for X-ray protein structure refinement. Acta Crystallogr. A 47, 392-400.
    • (1991) Acta Crystallogr. A , vol.47 , pp. 392-400
    • Engh, R.1    Huber, R.2
  • 35
    • 77957003470 scopus 로고
    • Enzymes of protein metabolism. Arginase
    • Greenberg, D.M. (1955). Enzymes of protein metabolism. Arginase. Methods Enzymol. 2, 368-374.
    • (1955) Methods Enzymol. , vol.2 , pp. 368-374
    • Greenberg, D.M.1
  • 36
    • 0026244229 scopus 로고
    • MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
    • Kraulis, P.J. (1991). MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallogr. 24, 946-950.
    • (1991) J. Appl. Crystallogr. , vol.24 , pp. 946-950
    • Kraulis, P.J.1
  • 37
    • 0000913086 scopus 로고
    • A fast algorithm for rendering space-filling molecule pictures
    • Bacon, D.J. & Anderson, W.F. (1988). A fast algorithm for rendering space-filling molecule pictures. J. Mol. Graph. 6, 219-220.
    • (1988) J. Mol. Graph. , vol.6 , pp. 219-220
    • Bacon, D.J.1    Anderson, W.F.2
  • 38
    • 0028057108 scopus 로고
    • Raster3D Version 2.0 - A program for photorealistic molecular graphics
    • Merritt, E.A. & Murphy, M.E.P. (1994). Raster3D Version 2.0 - A program for photorealistic molecular graphics. Acta Crystallogr. D 50, 869-873.
    • (1994) Acta Crystallogr. D , vol.50 , pp. 869-873
    • Merritt, E.A.1    Murphy, M.E.P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.