The limits to genomic predictions: Role of σN in environmental stress survival of Pseudomonas putida

FEMS Microbiology Ecology

Volumn 35, Issue 2, 2001, Pages 217-221

  Cases, I ^a   De Lorenzo, V ^a  

^a CENTRO NACIONAL DE BIOTECNOLOGÍA   (Spain)

Author keywords

Genomics; Heat shock; Pseudomonas; Sigma factor; Starvation; Stress

Indexed keywords

CARBON; HYDROGEN PEROXIDE; SIGMA FACTOR;

BACTERIUM MUTANT; BIODEGRADATION; CONTROLLED STUDY; DNA SEQUENCE; GENE EXPRESSION; HEAT SHOCK; NONHUMAN; PREDICTION; PRIORITY JOURNAL; PSEUDOMONAS PUTIDA; REVIEW; STARVATION; STRESS; SURVIVAL;

BACTERIA (MICROORGANISMS); PSEUDOMONAS; PSEUDOMONAS PUTIDA;

EID: 0035075915     PISSN: 01686496     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-6496(01)00088-5     Document Type: Short Survey

References (34)

1. Microbial genome sequencing
2. Status of genome projects for nonpathogenic bacteria and archea
3. The functional and regulatory roles of sigma factors in transcription
4. 54)
5. Core RNA polymerase assists binding of the transcription factor sigma 54 to promoter DNA
6. The bacterial enhancer-binding protein NtrC as a molecular machine
7. Promoter selectivity of prokaryotic RNA polymerases
8. Function and regulation of the heat shock proteins
9. Involvement of Pseudomonas putida RpoN sigma factor in regulation of various metabolic functions
10. The G-protein FlhF has a role in polar flagellar placement and general stress response induction in Pseudomonas putida
11. Transcriptional control of the Pseudomonas TOL plasmid catabolic operons is achieved through an interplay of host factors and plasmid encoded regulators
12. Cloning and nucleotide sequence of the gene encoding the positive regulator (DmpR) of the phenol catabolic pathway encoded by pVI150 and identification of DmpR as a member of the NtrC family of transcriptional activators
13. 54
14. 54 in exponential silencing of the Pseudomonas putida TOL plasmid Pu promoter
15. Early and late response of TOL promoters to pathway inducers: Identification of postexponential promoters in Pseudomonas putida with lacZ-tet bicistronic reporters
16. 54-dependent Po promoter
17. 54-dependent Po promoter controlling the Pseudomonas-derived (methyl) phenol dmp operon of pVI150
18. RpoN dependent transcription of rpoH?
19. N in small genomes
20. Complete genome sequence of Pseudomonas aeruginosa PA01, an opportunistic pathogen
21. 54-dependent promoter sequences
22. 32 homologues from Gram negative bacteria: Conserved mRNA and protein segments for heat shock regulation
23. Cloning, sequencing, and phenotypic characterization of the rpoS gene from Pseudomonas putida KT2440
24. The role of the factor sigma S (KatF) in bacterial global regulation
25. The rpoS gene regulates OP2, an operon for the lower pathway of xylene catabolism on the TOL plasmid, and the stress response in Pseudomonas putida mt-2
26. Back to log phase: Sigma S as a global regulator in the osmotic control of gene expression in Escherichia coli
27. rpoS-dependent stress tolerance in Pseudomonas aeruginosa
28. Effect of rpoS mutation on the stress response and expression of virulence factors in Pseudomonas aeruginosa
29. rpoE, the gene encoding the second heat-shock sigma factor E in Escherichia coli
30. Pseudomonas aeruginosa promoters which contain a conserved GG-N10-GC motif but appear to be RpoN-independent
31. Regulation of the rpoN, ORF102 and ORF154 genes in Pseudomonas putida
32. Dual regulation of mucoidy in Pseudomonas aeruginosa and sigma factor antagonism
33. The complete genome of Escherichia coli