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Volumn 180, Issue 13, 1998, Pages 3421-3431

Cloning, sequencing, and phenotypic characterization of the rpoS gene from Pseudomonas putida KT2440

Author keywords

[No Author keywords available]

Indexed keywords

ALLELE; ARTICLE; BACTERIAL GENE; BACTERIUM IDENTIFICATION; ESCHERICHIA COLI; GENE SEQUENCE; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PRIORITY JOURNAL; PSEUDOMONAS PUTIDA; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; STRAIN DIFFERENCE;

EID: 0031780471     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.180.13.3421-3431.1998     Document Type: Article
Times cited : (97)

References (50)
  • 2
    • 84873799110 scopus 로고
    • Studies on lysogenesis. I. The mode of phage liberation by lysogenic Escherichia coli
    • Bertani, G. 1951. Studies on lysogenesis. I. The mode of phage liberation by lysogenic Escherichia coli. J. Bacteriol. 62:293-300.
    • (1951) J. Bacteriol. , vol.62 , pp. 293-300
    • Bertani, G.1
  • 4
    • 0014674485 scopus 로고
    • A complementary analysis of the restriction and modification of DNA in Escherichia coli
    • Boyer, H. W., and D. Roulland-Dussoix. 1969. A complementary analysis of the restriction and modification of DNA in Escherichia coli. J. Mol. Biol. 41:459-472.
    • (1969) J. Mol. Biol. , vol.41 , pp. 459-472
    • Boyer, H.W.1    Roulland-Dussoix, D.2
  • 5
    • 0029183073 scopus 로고
    • An inexpensive alternative to glassmilk for DNA purification
    • Boyle, J. S., and A. M. Lew. 1995. An inexpensive alternative to glassmilk for DNA purification. Trends Genet. 11:8.
    • (1995) Trends Genet. , vol.11 , pp. 8
    • Boyle, J.S.1    Lew, A.M.2
  • 6
    • 0002657642 scopus 로고
    • DNA replication and the cell cycle in Escherichia coli
    • Clark, J. D., and O. Maaloe. 1967. DNA replication and the cell cycle in Escherichia coli. J. Mol. Biol. 23:99-112.
    • (1967) J. Mol. Biol. , vol.23 , pp. 99-112
    • Clark, J.D.1    Maaloe, O.2
  • 8
    • 0020480512 scopus 로고
    • Recognition of protein coding regions in DNA sequences
    • Fickett, J. W. 1982. Recognition of protein coding regions in DNA sequences. Nucleic Acids Res. 10:5303-5318.
    • (1982) Nucleic Acids Res. , vol.10 , pp. 5303-5318
    • Fickett, J.W.1
  • 10
    • 0005536404 scopus 로고
    • Molecular and functional analysis of the TOL plasmid pWWO from Pseudomonas putida and cloning of the genes for the entire regulated aromatic ring meta cleavage pathway
    • Franklin, F. C. H., M. Bagdasarian, M. M. Bagdasarian, and K. N. Timmis. 1981. Molecular and functional analysis of the TOL plasmid pWWO from Pseudomonas putida and cloning of the genes for the entire regulated aromatic ring meta cleavage pathway. Proc. Natl. Acad. Sci. USA 78:7458-7462.
    • (1981) Proc. Natl. Acad. Sci. USA , vol.78 , pp. 7458-7462
    • Franklin, F.C.H.1    Bagdasarian, M.2    Bagdasarian, M.M.3    Timmis, K.N.4
  • 11
    • 0020429966 scopus 로고
    • Construction of a broad host range cosmid cloning vector and its use in the genetic analysis of Rhizobium mutants
    • Friedman, A. M., S. R. Long, S. E. Brown, W. J. Buikema, and F. M. Ausubel 1982. Construction of a broad host range cosmid cloning vector and its use in the genetic analysis of Rhizobium mutants. Gene 18:289-296.
    • (1982) Gene , vol.18 , pp. 289-296
    • Friedman, A.M.1    Long, S.R.2    Brown, S.E.3    Buikema, W.J.4    Ausubel, F.M.5
  • 12
    • 0028144747 scopus 로고
    • Responses to nutrient starvation in Pseudomonas putida KT2442: Two-dimensional electrophoretic analysis of starvation- and stress-induced proteins
    • Givskov, M., L. Eberl, and S. Molin. 1994. Responses to nutrient starvation in Pseudomonas putida KT2442: two-dimensional electrophoretic analysis of starvation- and stress-induced proteins. J. Bacteriol. 176:4816-4824.
    • (1994) J. Bacteriol. , vol.176 , pp. 4816-4824
    • Givskov, M.1    Eberl, L.2    Molin, S.3
  • 13
    • 0027972695 scopus 로고
    • Responses to nutrient starvation in Pseudomonas putida KT2442: Analysis of general cross-protection, cell shape, and macromolecular content
    • Givskov, M., L. Eberl, S. M¢ller, K. Poulsen, and S. Molin. 1994. Responses to nutrient starvation in Pseudomonas putida KT2442: analysis of general cross-protection, cell shape, and macromolecular content. J. Bacteriol. 176:7-14.
    • (1994) J. Bacteriol. , vol.176 , pp. 7-14
    • Givskov, M.1    Eberl, L.2    Mller, S.3    Poulsen, K.4    Molin, S.5
  • 14
    • 0024463732 scopus 로고
    • A simple method for the preparation of plasmid and chromosomal E. coli DNA
    • Grimberg, J., S. Maguire, and L. Belluscio. 1989. A simple method for the preparation of plasmid and chromosomal E. coli DNA. Nucleic Acids Res. 17:8893.
    • (1989) Nucleic Acids Res. , vol.17 , pp. 8893
    • Grimberg, J.1    Maguire, S.2    Belluscio, L.3
  • 15
    • 0029843811 scopus 로고    scopus 로고
    • Back to log phase: SigmaS as a global regulator in the osmotic control of gene expression in Escherichia coli
    • Hengge-Aronis, R. 1996. Back to log phase: sigmaS as a global regulator in the osmotic control of gene expression in Escherichia coli. Mol. Microbiol. 21:887-893.
    • (1996) Mol. Microbiol. , vol.21 , pp. 887-893
    • Hengge-Aronis, R.1
  • 16
    • 0025047590 scopus 로고
    • Transposon vectors containing non-antibiotic resistance selection markers for cloning and stable chromosomal insertion of foreign genes in gram-negative bacteria
    • Herrero, M., V. De Lorenzo, and K. N. Timmis. 1990. Transposon vectors containing non-antibiotic resistance selection markers for cloning and stable chromosomal insertion of foreign genes in gram-negative bacteria. J. Bacteriol. 172:6557-6567.
    • (1990) J. Bacteriol. , vol.172 , pp. 6557-6567
    • Herrero, M.1    De Lorenzo, V.2    Timmis, K.N.3
  • 17
    • 0028898767 scopus 로고
    • The rpoS gene from Yersinia enterocolitica and its influence on expression of virulence factors
    • Iriarte, M., I. Stainier, and G. R. Cornelis. 1995. The rpoS gene from Yersinia enterocolitica and its influence on expression of virulence factors. Infect. Immun. 63:1840-1847.
    • (1995) Infect. Immun. , vol.63 , pp. 1840-1847
    • Iriarte, M.1    Stainier, I.2    Cornelis, G.R.3
  • 19
    • 0025837193 scopus 로고
    • A wide-host-range suicide vector for improving reverse genetics in Gram-negative bacteria: Inactivation of the blaA gene of Yersinia enterocolitica
    • Kaniga, K., I. Delor, and G. R. Cornelis. 1991. A wide-host-range suicide vector for improving reverse genetics in Gram-negative bacteria: inactivation of the blaA gene of Yersinia enterocolitica. Gene 109:137-141.
    • (1991) Gene , vol.109 , pp. 137-141
    • Kaniga, K.1    Delor, I.2    Cornelis, G.R.3
  • 21
    • 0027987491 scopus 로고
    • The Salmonella typhimurium katF (rpoS) gene: Cloning, nucleotide sequence, and regulation of spvR and sprABCD virulence plasmid genes
    • Kowarz, L., C. Coynault, V. Robbe-Saule, and F. Norel. 1994. The Salmonella typhimurium katF (rpoS) gene: cloning, nucleotide sequence, and regulation of spvR and sprABCD virulence plasmid genes. J. Bacteriol. 176:6852-6860.
    • (1994) J. Bacteriol. , vol.176 , pp. 6852-6860
    • Kowarz, L.1    Coynault, C.2    Robbe-Saule, V.3    Norel, F.4
  • 23
    • 0026020230 scopus 로고
    • Identification of a central regulator of stationary phase gene expression in Escherichia coli
    • Lange, R., and R. Hengge-Aronis. 1991. Identification of a central regulator of stationary phase gene expression in Escherichia coli. Mol. Microbiol. 5:49-59.
    • (1991) Mol. Microbiol. , vol.5 , pp. 49-59
    • Lange, R.1    Hengge-Aronis, R.2
  • 24
    • 0028176450 scopus 로고
    • s subunit of RNA polymerase in Escherichia coli is controlled at the levels of transcription, translation, and protein stability
    • s subunit of RNA polymerase in Escherichia coli is controlled at the levels of transcription, translation, and protein stability. Genes Dev. 8:1600-1612.
    • (1994) Genes Dev. , vol.8 , pp. 1600-1612
    • Lange, R.1    Hengge-Aronis, R.2
  • 25
    • 0028019587 scopus 로고
    • The role of the sigmaS (KatF) in bacterial global regulation
    • Loewen, P. C., and R. Hengge-Aronis. 1994. The role of the sigmaS (KatF) in bacterial global regulation. Annu. Rev. Microbiol. 48:53-80.
    • (1994) Annu. Rev. Microbiol. , vol.48 , pp. 53-80
    • Loewen, P.C.1    Hengge-Aronis, R.2
  • 26
    • 0029092266 scopus 로고
    • Growth phase-dependent induction of stationary-phase promoters of Escherichia coli in different gram-negative bacteria
    • Miksch, G., and P. Dobrowolski. 1995. Growth phase-dependent induction of stationary-phase promoters of Escherichia coli in different gram-negative bacteria. J. Bacteriol. 177:5374-5378.
    • (1995) J. Bacteriol. , vol.177 , pp. 5374-5378
    • Miksch, G.1    Dobrowolski, P.2
  • 27
  • 28
    • 0024841943 scopus 로고
    • Nucleotide sequence of katF of Escherichia coli suggests KatF protein is a novel σ transcription factor
    • Mulvey, M. R., and P. C. Loewen. 1989. Nucleotide sequence of katF of Escherichia coli suggests KatF protein is a novel σ transcription factor. Nucleic Acids Res. 17:9979-9991.
    • (1989) Nucleic Acids Res. , vol.17 , pp. 9979-9991
    • Mulvey, M.R.1    Loewen, P.C.2
  • 29
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • Pearson, W. R., and D. J. Lipman. 1988. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA 85:2444-2448.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 30
    • 0028100840 scopus 로고
    • Cloning and sequencing of the RpoS (KatF) sigma factor from Salmonella typhimurium 14028s
    • Prince, R. W., F. C. Fang, and S. J. Libby. 1994. Cloning and sequencing of the RpoS (KatF) sigma factor from Salmonella typhimurium 14028s. Biochim. Biophys. Acta 1219:198-200.
    • (1994) Biochim. Biophys. Acta , vol.1219 , pp. 198-200
    • Prince, R.W.1    Fang, F.C.2    Libby, S.J.3
  • 31
    • 0025963981 scopus 로고
    • Survival in soils of an herbicide-resistant Pseudomonas putida strain bearing a recombinant TOL plasmid
    • Ramos, J. L., E. Duque, and M.I. Ramos-González. 1991. Survival in soils of an herbicide-resistant Pseudomonas putida strain bearing a recombinant TOL plasmid. Appl. Environ. Microbiol. 57:260-266.
    • (1991) Appl. Environ. Microbiol. , vol.57 , pp. 260-266
    • Ramos, J.L.1    Duque, E.2    Ramos-González, M.I.3
  • 34
    • 0026014234 scopus 로고
    • Conjugational transfer of recombinant DNA in cultures and in soils: Host range of Pseudomonas putida TOL plasmids
    • Ramos-González, M. I., E. Duque, and J. L. Ramos. 1991. Conjugational transfer of recombinant DNA in cultures and in soils: host range of Pseudomonas putida TOL plasmids. Appl. Environ. Microbiol. 57:3020-3027.
    • (1991) Appl. Environ. Microbiol. , vol.57 , pp. 3020-3027
    • Ramos-González, M.I.1    Duque, E.2    Ramos, J.L.3
  • 35
    • 0028136635 scopus 로고
    • Chromosomal gene capture mediated by the Pseudomonas purida TOL catabolic plasmid
    • Ramos-González, M. I., M. A. Ramos-Díaz, and J. L. Ramos. 1994. Chromosomal gene capture mediated by the Pseudomonas purida TOL catabolic plasmid. J. Bacteriol. 176:4635-4641.
    • (1994) J. Bacteriol. , vol.176 , pp. 4635-4641
    • Ramos-González, M.I.1    Ramos-Díaz, M.A.2    Ramos, J.L.3
  • 36
    • 0029111999 scopus 로고
    • Characterization of rhizosphere colonization by luminescent Enterobacter cloacae at the population and single-cell levels
    • Rattray, E. A. S., J. I. Prosser, L. A. Glover, and K. Killham. 1995. Characterization of rhizosphere colonization by luminescent Enterobacter cloacae at the population and single-cell levels. Appl. Environ. Microbiol. 61:2950-2957.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 2950-2957
    • Rattray, E.A.S.1    Prosser, J.I.2    Glover, L.A.3    Killham, K.4
  • 37
    • 0029088219 scopus 로고
    • Construction and behavior of biologically contained bacteria for environmental applications in bioremediation
    • Ronchel, M. C., C. Ramos, L. B. Jensen, S. Molin, and J. L. Ramos. 1995. Construction and behavior of biologically contained bacteria for environmental applications in bioremediation. Appl. Environ. Microbiol. 61:2990-2994.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 2990-2994
    • Ronchel, M.C.1    Ramos, C.2    Jensen, L.B.3    Molin, S.4    Ramos, J.L.5
  • 39
    • 0029417284 scopus 로고
    • The sigma factor sigmaS affects antibiotic production and biological control activity of Pseudomonas fluorescens Pf-5
    • Samiguet, A., J. Kraus, M. D. Henkels, A. M. Muehlchen, and J. E. Loper. 1995. The sigma factor sigmaS affects antibiotic production and biological control activity of Pseudomonas fluorescens Pf-5. Proc. Natl. Acad. Sci. USA 92:12255-12259.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 12255-12259
    • Samiguet, A.1    Kraus, J.2    Henkels, M.D.3    Muehlchen, A.M.4    Loper, J.E.5
  • 41
    • 0016154301 scopus 로고
    • The 3′-terminal sequence of E. coli 16S ribosomal RNA: Complementarity to nonsense triplets and ribosome binding sites
    • Shine, J., and L. Dalgarno. 1974. The 3′-terminal sequence of E. coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites. Proc. Natl. Acad. Sci. USA 71:1342-1346.
    • (1974) Proc. Natl. Acad. Sci. USA , vol.71 , pp. 1342-1346
    • Shine, J.1    Dalgarno, L.2
  • 43
    • 0028324804 scopus 로고
    • Acid and base resistance in Escherichia coli and Shigella flexneri: Role of rpoS and growth pH
    • Small, P., D. Blankenhorn, D. Welty, E. Zinser, and J. L. Slonczewski. 1994. Acid and base resistance in Escherichia coli and Shigella flexneri: role of rpoS and growth pH. J. Bacteriol. 176:1729-1737.
    • (1994) J. Bacteriol. , vol.176 , pp. 1729-1737
    • Small, P.1    Blankenhorn, D.2    Welty, D.3    Zinser, E.4    Slonczewski, J.L.5
  • 44
    • 0028362445 scopus 로고
    • Structure of the 5′ upstream region and the regulation of the rpoS gene of Escherichia coli
    • Takayanagi, Y., K. Tanaka, and H. Takahashi. 1994. Structure of the 5′ upstream region and the regulation of the rpoS gene of Escherichia coli. Mol. Gen. Genet. 243:525-531.
    • (1994) Mol. Gen. Genet. , vol.243 , pp. 525-531
    • Takayanagi, Y.1    Tanaka, K.2    Takahashi, H.3
  • 45
    • 0028035132 scopus 로고
    • Cloning, analysis and expression of an rpoS homologue gene from Pseudomonas aeruginosa PAO1
    • Tanaka, K., and H. Takahashi. 1994. Cloning, analysis and expression of an rpoS homologue gene from Pseudomonas aeruginosa PAO1. Gene 150:81-85.
    • (1994) Gene , vol.150 , pp. 81-85
    • Tanaka, K.1    Takahashi, H.2
  • 47
    • 0027222601 scopus 로고
    • Molecular cloning, nucleotide sequence, and characterization of lppB, encoding an antigenic 40-kilodalton lipoprotein of Haemophilus somnus
    • Theisen, M., C. R. Rioux, and A. A. Potter. 1993. Molecular cloning, nucleotide sequence, and characterization of lppB, encoding an antigenic 40-kilodalton lipoprotein of Haemophilus somnus. Infect. Immun. 61:1793-1798.
    • (1993) Infect. Immun. , vol.61 , pp. 1793-1798
    • Theisen, M.1    Rioux, C.R.2    Potter, A.A.3
  • 48
    • 0020442864 scopus 로고
    • The pUC plasmid: An M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers
    • Vieira, J., and J. Messing. 1982. The pUC plasmid: an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers. Gene 19:259-268.
    • (1982) Gene , vol.19 , pp. 259-268
    • Vieira, J.1    Messing, J.2
  • 50
    • 0024594736 scopus 로고
    • Quantitative evolution of Escherichia coli host strains for tolerance to cytosine methylation in plasmid and phage recombinants
    • Woodcock, D. M. 1989. Quantitative evolution of Escherichia coli host strains for tolerance to cytosine methylation in plasmid and phage recombinants. Nucleic Acids Res. 17:3469-3478.
    • (1989) Nucleic Acids Res. , vol.17 , pp. 3469-3478
    • Woodcock, D.M.1


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