Location analysis of DNA-bound proteins at the whole-genome level: Untangling transcriptional regulatory networks

BioEssays

Volumn 23, Issue 6, 2001, Pages 473-476

  Nal, Béatrice ^a   Mohr, Elodie ^a   Ferrier, Pierre ^a,b  

^a INSERM   (France)

^b CENTRE D IMMUNOLOGIE DE MARSEILLE LUMINY   (France)

Author keywords

[No Author keywords available]

Indexed keywords

BIOASSAY; CHROMATIN; EUKARYOTIC CELL; GENE EXPRESSION; GENETIC REGULATION; GENETIC TRANSCRIPTION; IMMUNOPRECIPITATION; PROTEIN DNA BINDING; TRANSACTIVATION;

DNA; DNA-BINDING PROTEINS; GENOME; GENOME, FUNGAL; SACCHAROMYCES CEREVISIAE; TRANSCRIPTION FACTORS;

EID: 0034984305     PISSN: 02659247     EISSN: None     Source Type: Journal    
DOI: 10.1002/bies.1066     Document Type: Article

References (28)

1. Genome-wide location and function of DNA binding proteins
2. Genomic binding sites of the yeast cell-cycle transcription factors -SBF and MBF
3. Use of a cDNA microarray to analyse gene expression patterns in human cancer
4. Exploring the metabolic and genetic control of gene expression on a genomic scale
5. A genome-wide transcriptional analysis of the mitotic cell cycle
6. Dissecting the regulatory circuitry of a eukaryotic genome
7. Genomics and array technology
8. Expression profiling: DNA arrays in many guises
9. Quantitative whole-genome analysis of DNA-protein interactions by in vivo methylase protection in E. coli
10. Systematic determination of genetic network architecture
11. Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae
12. Orchestrated transcription of key pathways in arabidopsis by the circadian clock
13. Discovering regulatory elements in non-coding sequences by analysis of spaced dyads
14. Mapping polycomb-repressed domains in the bithorax complex using in vivo formaldehyde cross-linked chromatin
15. In vivo cross-linking and immunoprecipitation for studying dynamic protein:DNA associations in a chromatin environment
16. Genomic targeting of methylated DNA: Influence of methylation on transcription, replication, chromatin structure, and histone acetylation
17. Analysis of promoter binding by the E2F and pRB families in vivo: Distinct E2F proteins mediate activation and repression
18. Ordered recruitment of chromatin modifying and general transcription factors to the IFN-β promoter
19. High-resolution localization of Drosophila Spt5 and Spt6 at heat shock genes in vivo: Roles in promoter proximal pausing and transcription elongation
20. Genomic sequencing and methylation analysis by ligation mediated PCR
21. The yeast genome directory
22. Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles
23. In vivo footprinting of a muscle specific enhancer by ligation mediated PCR
24. A new dimension for the human genome project: Towards comprehensive expression maps
25. Initial sequencing analysis of the human genome
26. Functional annotation of the mouse genome sequences
27. The sequence of the human genome