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Volumn 266, Issue 1, 1997, Pages 15-22

Heteronuclear NMR studies of E. coli translation initiation factor IF3. Evidence that the inter-domain region is disordered in solution

Author keywords

Heteronuclear relaxation; Multi domain protein; Protein flexibility; Ribosome; Translation

Indexed keywords

INITIATION FACTOR 3; LYSINE; PROTON;

EID: 0031566955     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1996.0756     Document Type: Article
Times cited : (43)

References (37)
  • 1
    • 0002333715 scopus 로고    scopus 로고
    • Amplification of radiation damping in a 600 MHz NMR spectrometer. Application to the study of water-proteins interactions
    • Abergel D., Louis-Joseph A., Lallemand J.-Y. Amplification of radiation damping in a 600 MHz NMR spectrometer. Application to the study of water-proteins interactions. J. Biomol. NMR. 8:1996;15-22.
    • (1996) J. Biomol. NMR , vol.8 , pp. 15-22
    • Abergel, D.1    Louis-Joseph, A.2    Lallemand, J.-Y.3
  • 2
    • 0027988297 scopus 로고
    • Backbone dynamics of a highly disordered 131 residue fragment of staphylococcal nuclease
    • Alexandrescu A. T., Shortle D. Backbone dynamics of a highly disordered 131 residue fragment of staphylococcal nuclease. J. Mol. Biol. 242:1994;572-546.
    • (1994) J. Mol. Biol. , vol.242 , pp. 572-546
    • Alexandrescu, A.T.1    Shortle, D.2
  • 3
    • 0026748968 scopus 로고
    • 15N relaxation using inverse detected two-dimensional NMR spectroscopy: The central helix is flexible
    • 15N relaxation using inverse detected two-dimensional NMR spectroscopy: the central helix is flexible. Biochemistry. 31:1992;5269-5278.
    • (1992) Biochemistry , vol.31 , pp. 5269-5278
    • Barbato, G.1    Ikura, M.2    Kay, L.E.3    Pastor, R.W.4    Bax, A.5
  • 4
    • 0029111710 scopus 로고
    • X-ray crystallography shows that translational initiation factor IF3 consists of two compact α/β domains linked by an α-helix
    • Biou V., Shu F., Ramakrishnan V. X-ray crystallography shows that translational initiation factor IF3 consists of two compact α/β domains linked by an α-helix. EMBO J. 14:1995;4056-4064.
    • (1995) EMBO J. , vol.14 , pp. 4056-4064
    • Biou, V.1    Shu, F.2    Ramakrishnan, V.3
  • 5
    • 0000195671 scopus 로고
    • Natural abundance nitrogen-15 NMR by enhanced heteronuclear spectroscopy
    • Bodenhausen G., Ruben D. J. Natural abundance nitrogen-15 NMR by enhanced heteronuclear spectroscopy. Chem. Phys. Letters. 69:1980;185-189.
    • (1980) Chem. Phys. Letters , vol.69 , pp. 185-189
    • Bodenhausen, G.1    Ruben, D.J.2
  • 7
    • 0025046144 scopus 로고
    • Deviations from the simple two-parameter model-free approach to the interpretation of nitrogen-15 nuclear magnetic relaxation of proteins
    • Clore G. M., Szabo A., Bax A., Kay L. E., Driscoll P. C., Gronenborn A. M. Deviations from the simple two-parameter model-free approach to the interpretation of nitrogen-15 nuclear magnetic relaxation of proteins. J. Am. Chem. Soc. 112:1990b;4989-4991.
    • (1990) J. Am. Chem. Soc. , vol.112 , pp. 4989-4991
    • Clore, G.M.1    Szabo, A.2    Bax, A.3    Kay, L.E.4    Driscoll, P.C.5    Gronenborn, A.M.6
  • 8
    • 0028242962 scopus 로고
    • MC-Fit: Using Monte-Carlo methods to get accurate confidence limits on enzyme parameters
    • Dardel F. MC-Fit: using Monte-Carlo methods to get accurate confidence limits on enzyme parameters. Comput. Applic. Biosci. 10:1994;273-275.
    • (1994) Comput. Applic. Biosci. , vol.10 , pp. 273-275
    • Dardel, F.1
  • 9
    • 0023056743 scopus 로고
    • Cross-linking of initiation factor IF3 to Escherichia coli 30 S ribosomal subunit by trans -diamminedichloroplatinum(II): Characterization of two cross-linking sites in 16 S rRNA; A possible way of functioning for IF3
    • Ehresmann C., Moine H., Mougel M., Dondon J., Grunberg-Manago M., Ebel J. P., Ehresmann B. Cross-linking of initiation factor IF3 to Escherichia coli 30 S ribosomal subunit by trans -diamminedichloroplatinum(II): characterization of two cross-linking sites in 16 S rRNA; a possible way of functioning for IF3. Nucl.Acids Res. 14:1986;4803-4821.
    • (1986) Nucl.Acids Res. , vol.14 , pp. 4803-4821
    • Ehresmann, C.1    Moine, H.2    Mougel, M.3    Dondon, J.4    Grunberg-Manago, M.5    Ebel, J.P.6    Ehresmann, B.7
  • 10
    • 0029966505 scopus 로고    scopus 로고
    • Mutations at two invariant nucleotides in the 3′-minor domain of Escherichia coli 16 S rRNA affecting translational initiation and initiation factor 3 function
    • Firpo M. A., Connelly M. B., Goss D. J., Dahlberg A. E. Mutations at two invariant nucleotides in the 3′-minor domain of Escherichia coli 16 S rRNA affecting translational initiation and initiation factor 3 function. J. Biol. Chem. 271:1996;4693-4698.
    • (1996) J. Biol. Chem. , vol.271 , pp. 4693-4698
    • Firpo, M.A.1    Connelly, M.B.2    Goss, D.J.3    Dahlberg, A.E.4
  • 11
    • 0023055086 scopus 로고
    • Correlation between sites of limited proteolysis and segmental mobility in thermolysin
    • Fontana A., Fassina G., Vita C., Dalzoppo D., Zamai M., Zambonin M. Correlation between sites of limited proteolysis and segmental mobility in thermolysin. Biochemistry. 25:1986;1847-1851.
    • (1986) Biochemistry , vol.25 , pp. 1847-1851
    • Fontana, A.1    Fassina, G.2    Vita, C.3    Dalzoppo, D.4    Zamai, M.5    Zambonin, M.6
  • 12
    • 0027993293 scopus 로고
    • The N-terminal of initiation factor IF3 is folded as a stable independent domain
    • Fortier P. L., Schmitter J. M., Garcia C., Dardel E. The N-terminal of initiation factor IF3 is folded as a stable independent domain. Biochimie. 76:1994;376-383.
    • (1994) Biochimie , vol.76 , pp. 376-383
    • Fortier, P.L.1    Schmitter, J.M.2    Garcia, C.3    Dardel, E.4
  • 13
    • 0028849240 scopus 로고
    • Solution structure of the ribosome-binding domain of E. coli translation initiation factor IF3. Homology with the U1A protein of the eukaryotic spliceosome
    • Garcia C., Fortier P, Blanquet S., Lallemand J.-Y., Dardel F. Solution structure of the ribosome-binding domain of E. coli translation initiation factor IF3. Homology with the U1A protein of the eukaryotic spliceosome. J. Mol. Biol. 254:1995;247-259.
    • (1995) J. Mol. Biol. , vol.254 , pp. 247-259
    • Garcia, C.1    Fortier, P.2    Blanquet, S.3    Lallemand, J.-Y.4    Dardel, F.5
  • 15
    • 0016800091 scopus 로고
    • Light-scattering studies showing the effect of initiation factors on the reversible dissociation of Escherichia coli ribosomes
    • Godefroy-Colburn T., Wolfe A. D., Dondon J., Grunberg-Manago M., Dressen P., Pantaloni D. Light-scattering studies showing the effect of initiation factors on the reversible dissociation of Escherichia coli ribosomes. J. Mol. Biol. 94:1975;461-487.
    • (1975) J. Mol. Biol. , vol.94 , pp. 461-487
    • Godefroy-Colburn, T.1    Wolfe, A.D.2    Dondon, J.3    Grunberg-Manago, M.4    Dressen, P.5    Pantaloni, D.6
  • 16
    • 0025365804 scopus 로고
    • Initiation of mRNA translation in prokaryotes
    • Gualerzi C. O., Pon C. L. Initiation of mRNA translation in prokaryotes. Biochemistry. 29:1990;5883-5889.
    • (1990) Biochemistry , vol.29 , pp. 5883-5889
    • Gualerzi, C.O.1    Pon, C.L.2
  • 17
    • 0026089657 scopus 로고
    • Efficient computation of three-dimensional protein structures in solution from nuclear magnetic resonance data using the program DIANA and the upporting programs CALIBA, HABAS and GLOMSA
    • Güntert P., Braun W., Wüthrich K. Efficient computation of three-dimensional protein structures in solution from nuclear magnetic resonance data using the program DIANA and the upporting programs CALIBA, HABAS and GLOMSA. J. Mol. Biol. 217:1991;517-530.
    • (1991) J. Mol. Biol. , vol.217 , pp. 517-530
    • Güntert, P.1    Braun, W.2    Wüthrich, K.3
  • 18
    • 0028606835 scopus 로고
    • 15N relaxation studies of the amino-terminal fragment of urokinase-type plasminogen activator
    • 15N relaxation studies of the amino-terminal fragment of urokinase-type plasminogen activator. Biochemistry. 33:1994;15418-15424.
    • (1994) Biochemistry , vol.33 , pp. 15418-15424
    • Hansen, A.P.1    Petros, A.M.2    Meadows, R.P.3    Fesik, S.W.4
  • 19
    • 0024835265 scopus 로고
    • Selection of the initiator tRNA by escherichia coli initiation factors
    • Hartz D., McPheeters D. S., Gold L. Selection of the initiator tRNA by escherichia coli initiation factors. Genes Dev. 3:1989;1899-1912.
    • (1989) Genes Dev. , vol.3 , pp. 1899-1912
    • Hartz, D.1    McPheeters, D.S.2    Gold, L.3
  • 20
    • 0025018043 scopus 로고
    • Domains of initiatory tRNA and initiation codon crucial for initiator tRNA selection by Escherichia coli IF3
    • Hartz D., Binkley J., Hollingworth T., Gold L. Domains of initiatory tRNA and initiation codon crucial for initiator tRNA selection by Escherichia coli IF3. Genes Dev. 4:1990;1790-1800.
    • (1990) Genes Dev. , vol.4 , pp. 1790-1800
    • Hartz, D.1    Binkley, J.2    Hollingworth, T.3    Gold, L.4
  • 21
    • 0024449503 scopus 로고
    • 15N inverse detected heteronuclear NMR spectroscopy: Application to staphylococcal nuclease
    • 15N inverse detected heteronuclear NMR spectroscopy: application to staphylococcal nuclease. Biochemistry. 28:1989;8972-8979.
    • (1989) Biochemistry , vol.28 , pp. 8972-8979
    • Kay, L.E.1    Torchia, D.A.2    Bax, A.3
  • 23
    • 0028998987 scopus 로고
    • Prokaryotic translation initiation factor IF3 is an elongated protein consisting of two crystallizable domains
    • Kycia J. H., Biou V., Shu F., Gerchman S. E., Graziano V., Ramakrishnan V. Prokaryotic translation initiation factor IF3 is an elongated protein consisting of two crystallizable domains. Biochemistry. 34:1995;6183-6187.
    • (1995) Biochemistry , vol.34 , pp. 6183-6187
    • Kycia, J.H.1    Biou, V.2    Shu, F.3    Gerchman, S.E.4    Graziano, V.5    Ramakrishnan, V.6
  • 24
    • 0023161509 scopus 로고
    • 2terminal cleavage of Escherichia coli translational initiation factor IF3. A mechanism to control the intracellular level of the factor?
    • 2terminal cleavage of Escherichia coli translational initiation factor IF3. A mechanism to control the intracellular level of the factor? FEBS Letters. 215:1987;115-121.
    • (1987) FEBS Letters , vol.215 , pp. 115-121
    • Lammi, M.1    Pon, C.L.2    Gualerzi, C.O.3
  • 25
    • 33646719091 scopus 로고
    • Model-free approach to the interpretation of nucler magnetic resonance relaxation in macromolecules. I. Theory and range of validity
    • Lipari G., Szabo A. Model-free approach to the interpretation of nucler magnetic resonance relaxation in macromolecules. I. Theory and range of validity. J. Am. Chem. Soc. 104:1982;4546-4559.
    • (1982) J. Am. Chem. Soc. , vol.104 , pp. 4546-4559
    • Lipari, G.1    Szabo, A.2
  • 26
    • 0009229618 scopus 로고
    • Neutralization of radiation damping by selective feedback on a 400 MHz NMR spectrometer
    • Louis-Joseph A., Abergel D., Lallemand J.-Y. Neutralization of radiation damping by selective feedback on a 400 MHz NMR spectrometer. J. Biomol. NMR. 5:1995;212-216.
    • (1995) J. Biomol. NMR , vol.5 , pp. 212-216
    • Louis-Joseph, A.1    Abergel, D.2    Lallemand, J.-Y.3
  • 27
    • 0019125436 scopus 로고
    • Photochemical cross-linking of initiation factor-3 to Escherichia coli 30 S ribosomal subunits
    • MacKeen L. A., Kahan L., Wahba A. J., Schwartz I. Photochemical cross-linking of initiation factor-3 to Escherichia coli 30 S ribosomal subunits. J. Biol. Chem. 255:1980;10526-10531.
    • (1980) J. Biol. Chem. , vol.255 , pp. 10526-10531
    • MacKeen, L.A.1    Kahan, L.2    Wahba, A.J.3    Schwartz, I.4
  • 29
    • 0029051704 scopus 로고
    • Specific protection of 16 S RNA by translational initiation factors
    • Moazed D., Samaha R. R., Gualerzi C., Noller H. F. Specific protection of 16 S RNA by translational initiation factors. J. Mol. Biol. 248:1995;207-210.
    • (1995) J. Mol. Biol. , vol.248 , pp. 207-210
    • Moazed, D.1    Samaha, R.R.2    Gualerzi, C.3    Noller, H.F.4
  • 30
    • 0024974085 scopus 로고
    • Escherichia coli initiation factor 3 protein binding to 30 S ribosomal subunits alters the accessibility of nucleotides within the conserved central region of 16 S rRNA
    • Muralikrishna P., Wickstrom E. Escherichia coli initiation factor 3 protein binding to 30 S ribosomal subunits alters the accessibility of nucleotides within the conserved central region of 16 S rRNA. Biochemistry. 28:1989;7505-7510.
    • (1989) Biochemistry , vol.28 , pp. 7505-7510
    • Muralikrishna, P.1    Wickstrom, E.2
  • 31
    • 0000240249 scopus 로고
    • Selective excitation of intense solvent signals in the presence of radiation damping
    • Otting G., Liepinsh E. Selective excitation of intense solvent signals in the presence of radiation damping. J. Biomol. NMR. 5:1995;420-426.
    • (1995) J. Biomol. NMR , vol.5 , pp. 420-426
    • Otting, G.1    Liepinsh, E.2
  • 34
    • 0014964111 scopus 로고
    • Activity of initiation factor 3 in dissociating Escherichia ribosomes
    • Subramanian A. R., Davis B. D. Activity of initiation factor 3 in dissociating Escherichia ribosomes. Nature. 228:1970;1237-1275.
    • (1970) Nature , vol.228 , pp. 1237-1275
    • Subramanian, A.R.1    Davis, B.D.2
  • 35
    • 0017373691 scopus 로고
    • Separation of two forms of IF3 in Escherichia coli by two-dimensional gel electrophoresis
    • Suryanarayana T., Subramanian A. R. Separation of two forms of IF3 in Escherichia coli by two-dimensional gel electrophoresis. FEBS Letters. 79:1977;264-268.
    • (1977) FEBS Letters , vol.79 , pp. 264-268
    • Suryanarayana, T.1    Subramanian, A.R.2
  • 36
    • 0021100764 scopus 로고
    • Nuclease mapping of the secondary structure of the 49-nucleotide 3′ terminal cloacin fragment of Escherichia coli 16 S RNA and its interaction with initiation factor 3
    • Wickstrom E. Nuclease mapping of the secondary structure of the 49-nucleotide 3′ terminal cloacin fragment of Escherichia coli 16 S RNA and its interaction with initiation factor 3. Nucl. Acids. Res. 11:1983;2035-2052.
    • (1983) Nucl. Acids. Res. , vol.11 , pp. 2035-2052
    • Wickstrom, E.1
  • 37
    • 0030043573 scopus 로고    scopus 로고
    • Phosphotransfer and CheY-binding domains of the histidine autokinase CheA are joined by a flexible linker
    • Zhou H., McEvoy M. M., Lowry D. F., Swanson R. V., Simon M. I., Dahlquist F. W. Phosphotransfer and CheY-binding domains of the histidine autokinase CheA are joined by a flexible linker. Biochemistry. 35:1996;433-443.
    • (1996) Biochemistry , vol.35 , pp. 433-443
    • Zhou, H.1    McEvoy, M.M.2    Lowry, D.F.3    Swanson, R.V.4    Simon, M.I.5    Dahlquist, F.W.6


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