메뉴 건너뛰기




Volumn 14, Issue 14, 2000, Pages 1789-1796

Long palindromes formed in Streptomyces by nonrecombinational intra- strand annealing

Author keywords

DNA damage; Inverted repeat; Linear plasmid; Palindrome; Telomere

Indexed keywords

DOUBLE STRANDED DNA; PALINDROMIC DNA;

EID: 0034661278     PISSN: 08909369     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (23)

References (49)
  • 2
    • 0004224917 scopus 로고
    • American Society for Microbiology, Washington, DC
    • Berg, D.E. and Howe, M.M. 1989. Mobile DNA. American Society for Microbiology, Washington, DC.
    • (1989) Mobile DNA
    • Berg, D.E.1    Howe, M.M.2
  • 3
    • 0021210054 scopus 로고
    • Unstable DNA amplifications in methotrexate-resistant leishmania consist of extrachromosomal circles which relocalize during stabilization
    • Beverley, S.M., Coderre, J.A., Santi, D.V., and Schimke, R.T. 1984. Unstable DNA amplifications in methotrexate-resistant Leishmania consist of extrachromosomal circles which relocalize during stabilization. Cell 38: 431-439.
    • (1984) Cell , vol.38 , pp. 431-439
    • Beverley, S.M.1    Coderre, J.A.2    Santi, D.V.3    Schimke, R.T.4
  • 4
    • 0026010995 scopus 로고
    • Molecular themes in oncogenesis
    • Bishop, J.M. 1991. Molecular themes in oncogenesis. Cell 64: 235-248.
    • (1991) Cell , vol.64 , pp. 235-248
    • Bishop, J.M.1
  • 5
    • 0027211792 scopus 로고
    • Gene amplification and tumor progression
    • Brison, O. 1993. Gene amplification and tumor progression. Biochim. Biophys. Acta 1155: 25-41.
    • (1993) Biochim. Biophys. Acta , vol.1155 , pp. 25-41
    • Brison, O.1
  • 6
    • 0028866097 scopus 로고
    • An intramolecular recombination mechanism for the formation of the rRNA gene palindrome of Tetrahymena thermophila
    • Butler, D.K., Yasuda, L.E., and Yao, M.C. 1995. An intramolecular recombination mechanism for the formation of the rRNA gene palindrome of Tetrahymena thermophila. Mol. Cell. Biol. 15: 7117-7126.
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 7117-7126
    • Butler, D.K.1    Yasuda, L.E.2    Yao, M.C.3
  • 7
    • 0030582735 scopus 로고    scopus 로고
    • Induction of large DNA palindrome formation in yeast: Implications for gene amplification and genome stability in eukaryotes
    • _. 1996. Induction of large DNA palindrome formation in yeast: Implications for gene amplification and genome stability in eukaryotes. Cell 87: 1115-1122.
    • (1996) Cell , vol.87 , pp. 1115-1122
  • 8
    • 0027930540 scopus 로고
    • Bidirectional replication from an internal origin in a linear streptomyces plasmid
    • Chang, P.C. and Cohen, S.N. 1994. Bidirectional replication from an internal origin in a linear streptomyces plasmid. Science 265: 952-954.
    • (1994) Science , vol.265 , pp. 952-954
    • Chang, P.C.1    Cohen, S.N.2
  • 9
    • 0029847583 scopus 로고    scopus 로고
    • Streptomyces linear plasmids that contain a phage-like, centrally located, replication origin
    • Chang, P.C., Kim, E.S., and Cohen, S.N. 1996. Streptomyces linear plasmids that contain a phage-like, centrally located, replication origin. Mol. Microbiol. 22: 789-800.
    • (1996) Mol. Microbiol. , vol.22 , pp. 789-800
    • Chang, P.C.1    Kim, E.S.2    Cohen, S.N.3
  • 11
    • 0030904279 scopus 로고    scopus 로고
    • Expression of fragile sites triggers intrachromosomal mammalian gene amplification and sets boundaries to early amplicons
    • Coquelle, A., Pipiras, E., Toledo, F., Buttin, G., and Debatisse, M. 1997. Expression of fragile sites triggers intrachromosomal mammalian gene amplification and sets boundaries to early amplicons. Cell 89: 215-225.
    • (1997) Cell , vol.89 , pp. 215-225
    • Coquelle, A.1    Pipiras, E.2    Toledo, F.3    Buttin, G.4    Debatisse, M.5
  • 12
    • 0030443678 scopus 로고    scopus 로고
    • Genome downsizing during ciliate development: Nuclear division of labor through chromosome restructuring
    • Coyne, R.S., Chalker, D.L., and Yao, MC. 1996. Genome downsizing during ciliate development: Nuclear division of labor through chromosome restructuring. Annu. Rev. Genet. 30: 557-578.
    • (1996) Annu. Rev. Genet. , vol.30 , pp. 557-578
    • Coyne, R.S.1    Chalker, D.L.2    Yao, M.C.3
  • 13
    • 0033960606 scopus 로고    scopus 로고
    • Palindromes as substrates for multiple pathways of recombination in Escherichia coli
    • Cromie, G.A., Millar, C.B., Schmidt, K.H., and Leach, D.R. 2000. Palindromes as substrates for multiple pathways of recombination in Escherichia coli. Genetics 154: 513-522.
    • (2000) Genetics , vol.154 , pp. 513-522
    • Cromie, G.A.1    Millar, C.B.2    Schmidt, K.H.3    Leach, D.R.4
  • 14
    • 0030920611 scopus 로고    scopus 로고
    • A transposon-based strategy for sequencing repetitive DNA in eukaryotic genomes
    • Devine, S.E., Chissoe, S.L., Eby, Y., Wilson, R.K., and Boeke, J.D. 1997. A transposon-based strategy for sequencing repetitive DNA in eukaryotic genomes. Genome Res. 7: 551-563.
    • (1997) Genome Res. , vol.7 , pp. 551-563
    • Devine, S.E.1    Chissoe, S.L.2    Eby, Y.3    Wilson, R.K.4    Boeke, J.D.5
  • 15
    • 0001249242 scopus 로고
    • A hairpin plastid genome in barley
    • Ellis, T.H.N. and Day, A. 1986. A hairpin plastid genome in barley. EMBO J. 5: 2769-2774.
    • (1986) EMBO J. , vol.5 , pp. 2769-2774
    • Ellis, T.H.N.1    Day, A.2
  • 16
    • 0032030865 scopus 로고    scopus 로고
    • Replication of the linear chromosomal DNA from the centrally located oriC of Streptomyces ambofaciens revealed by PFGE gene dosage analysis
    • Fischer, G., Holl, A.C., Volff, J.N., Vandewiele, D., Decaris, B., and Leblond, P. 1998. Replication of the linear chromosomal DNA from the centrally located oriC of Streptomyces ambofaciens revealed by PFGE gene dosage analysis. Res. Microbiol. 149: 203-210.
    • (1998) Res. Microbiol. , vol.149 , pp. 203-210
    • Fischer, G.1    Holl, A.C.2    Volff, J.N.3    Vandewiele, D.4    Decaris, B.5    Leblond, P.6
  • 17
    • 0026583875 scopus 로고
    • Two alternative pathways of double-strand break repair that are kinetically separable and independently modulated
    • Fishman-Lobell, J., Rudin, N., and Haber, J.E. 1992. Two alternative pathways of double-strand break repair that are kinetically separable and independently modulated. Mol. Cell. Biol. 12: 1292-1303.
    • (1992) Mol. Cell. Biol. , vol.12 , pp. 1292-1303
    • Fishman-Lobell, J.1    Rudin, N.2    Haber, J.E.3
  • 18
    • 0022474735 scopus 로고
    • Large inverted duplications are associated with gene amplification
    • Ford, M. and Fried, M. 1986. Large inverted duplications are associated with gene amplification. Cell 45: 425-430.
    • (1986) Cell , vol.45 , pp. 425-430
    • Ford, M.1    Fried, M.2
  • 19
    • 0025988472 scopus 로고
    • The role of inverted duplication in the generation of gene amplification in mammalian cells
    • Fried, M., Feo, S., and Heard, E. 1991. The role of inverted duplication in the generation of gene amplification in mammalian cells. Biochim. Biophys. Acta 1090: 143-155.
    • (1991) Biochim. Biophys. Acta , vol.1090 , pp. 143-155
    • Fried, M.1    Feo, S.2    Heard, E.3
  • 20
    • 0026551842 scopus 로고
    • Identification of sbcD mutations as cosuppressors of recBC that allow propagation of DNA palindromes in Escherichia coli K-12
    • Gibson, F.P., Leach, D.R., and Lloyd, R.G. 1992. Identification of sbcD mutations as cosuppressors of recBC that allow propagation of DNA palindromes in Escherichia coli K-12. J. Bacteriol. 174: 1222-1228.
    • (1992) J. Bacteriol. , vol.174 , pp. 1222-1228
    • Gibson, F.P.1    Leach, D.R.2    Lloyd, R.G.3
  • 21
    • 0027738415 scopus 로고
    • Linear plasmids and chromosomes in bacteria
    • Hinnebusch, J. and Tilly, K. 1993. Linear plasmids and chromosomes in bacteria. Mol. Microbiol. 10: 917-922.
    • (1993) Mol. Microbiol. , vol.10 , pp. 917-922
    • Hinnebusch, J.1    Tilly, K.2
  • 22
    • 0020072055 scopus 로고
    • Analysis of linear plasmids isolated from Streptomyces: Association of protein with the ends of the plasmid DNA
    • Hirochika, H. and Sakaguchi, K. 1982. Analysis of linear plasmids isolated from Streptomyces: Association of protein with the ends of the plasmid DNA. Plasmid 7: 59-65.
    • (1982) Plasmid , vol.7 , pp. 59-65
    • Hirochika, H.1    Sakaguchi, K.2
  • 23
    • 0021419168 scopus 로고
    • A linear DNA plasmid from Streptomyces rochei with an inverted terminal repetition of 614 base pairs
    • Hirochika, H., Nakamura, K., and Sakaguchi, K. 1984. A linear DNA plasmid from Streptomyces rochei with an inverted terminal repetition of 614 base pairs. EMBO J. 3: 761-766.
    • (1984) EMBO J. , vol.3 , pp. 761-766
    • Hirochika, H.1    Nakamura, K.2    Sakaguchi, K.3
  • 25
    • 0031835535 scopus 로고    scopus 로고
    • The telomeres of Streptomyces chromosomes contain conserved palindromic sequences with potential to form complex secondary structures
    • Huang, C.H., Lin, Y.S., Yang, Y.L., Huang, S.W., and Chen, C.W. 1998. The telomeres of Streptomyces chromosomes contain conserved palindromic sequences with potential to form complex secondary structures. Mol. Microbiol. 28: 905-916.
    • (1998) Mol. Microbiol. , vol.28 , pp. 905-916
    • Huang, C.H.1    Lin, Y.S.2    Yang, Y.L.3    Huang, S.W.4    Chen, C.W.5
  • 26
    • 0023959559 scopus 로고
    • The multicopy appearance of a large inverted duplication and the sequence at the inversion joint suggest a new model for gene amplification
    • Hyrien, O., Debatisse, M., Buttin, G., and de Saint Vincent, B.R. 1988. The multicopy appearance of a large inverted duplication and the sequence at the inversion joint suggest a new model for gene amplification. EMBO J. 7: 407-417.
    • (1988) EMBO J. , vol.7 , pp. 407-417
    • Hyrien, O.1    Debatisse, M.2    Buttin, G.3    De Saint Vincent, B.R.4
  • 27
    • 0031607707 scopus 로고    scopus 로고
    • DNA breakage and repair
    • Jeggo, P.A. 1998. DNA breakage and repair. Adv. Genet. 38: 185-218.
    • (1998) Adv. Genet. , vol.38 , pp. 185-218
    • Jeggo, P.A.1
  • 28
    • 0023945015 scopus 로고
    • Isolation and characterization of a linear DNA plasmid from Streptomyces clavuligerus
    • Keen, C.L., Mendelovitz, S., Cohen, G., Aharonowitz, Y., and Roy, K.L. 1988. Isolation and characterization of a linear DNA plasmid from Streptomyces clavuligerus. Mol. Gen. Genet. 212: 172-176.
    • (1988) Mol. Gen. Genet. , vol.212 , pp. 172-176
    • Keen, C.L.1    Mendelovitz, S.2    Cohen, G.3    Aharonowitz, Y.4    Roy, K.L.5
  • 29
    • 0022098842 scopus 로고
    • Hairpin plasmid - A novel linear DNA of perfect hairpin structure
    • Kikuchi, Y., Hirai, K., Gunge, N., and Hishinuma, F. 1985. Hairpin plasmid - A novel linear DNA of perfect hairpin structure. EMBO J. 4: 1881-1886.
    • (1985) EMBO J. , vol.4 , pp. 1881-1886
    • Kikuchi, Y.1    Hirai, K.2    Gunge, N.3    Hishinuma, F.4
  • 30
    • 0023251897 scopus 로고
    • Giant linear plasmids in Streptomyces which code for antibiotic biosynthesis genes
    • Kinashi, H., Shimaji, M., and Sakai, A. 1987. Giant linear plasmids in Streptomyces which code for antibiotic biosynthesis genes. Nature 328: 454-456.
    • (1987) Nature , vol.328 , pp. 454-456
    • Kinashi, H.1    Shimaji, M.2    Sakai, A.3
  • 31
    • 0024267752 scopus 로고
    • Palindrome-hairpin linear plasmids possessing only a part of the ORF1 gene of the yeast killer plasmid pGKL1
    • Kitada, K. and Gunge, N. 1988. Palindrome-hairpin linear plasmids possessing only a part of the ORF1 gene of the yeast killer plasmid pGKL1. Mol. Gen. Genet. 215: 46-52.
    • (1988) Mol. Gen. Genet. , vol.215 , pp. 46-52
    • Kitada, K.1    Gunge, N.2
  • 32
    • 0016803941 scopus 로고
    • Site specific recA-independent recombination between bacterial plasmids: Involvement of palindromes at the recombinational loci
    • Kopecko, D.J. and Cohen, S.N. 1975. Site specific recA-independent recombination between bacterial plasmids: Involvement of palindromes at the recombinational loci. Proc. Natl. Acad. Sci. 72: 1373-1377.
    • (1975) Proc. Natl. Acad. Sci. , vol.72 , pp. 1373-1377
    • Kopecko, D.J.1    Cohen, S.N.2
  • 33
    • 0025056698 scopus 로고
    • Synapsis-mediated fusion of free DNA ends forms inverted dimer plasmids in yeast
    • Kunes, S., Botstein, D., and Fox, M.S. 1990. Synapsis-mediated fusion of free DNA ends forms inverted dimer plasmids in yeast. Genetics 124: 67-80.
    • (1990) Genetics , vol.124 , pp. 67-80
    • Kunes, S.1    Botstein, D.2    Fox, M.S.3
  • 34
    • 0030878279 scopus 로고    scopus 로고
    • A cruciform-dumbbell model for inverted dimer formation mediated by inverted repeats
    • Lin, C.T., Lyu, Y.L., and Liu, L.F. 1997. A cruciform-dumbbell model for inverted dimer formation mediated by inverted repeats. Nucleic Acids Res. 25: 3009-3016.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3009-3016
    • Lin, C.T.1    Lyu, Y.L.2    Liu, L.F.3
  • 35
    • 0021123453 scopus 로고
    • Model for homologous recombination during transfer of DNA into mouse L cells: Role for DNA ends in the recombination process
    • Lin, F.L., Sperle, K., and Sternberg, N. 1984. Model for homologous recombination during transfer of DNA into mouse L cells: Role for DNA ends in the recombination process. Mol. Cell. Biol. 4: 1020-1034.
    • (1984) Mol. Cell. Biol. , vol.4 , pp. 1020-1034
    • Lin, F.L.1    Sperle, K.2    Sternberg, N.3
  • 36
    • 0027751336 scopus 로고
    • The chromosomal DNA of Streptomyces lividans 66 is linear
    • Lin, Y.S., Kieser, H.M., Hopwood, D.A., and Chen, C.W. 1993. The chromosomal DNA of Streptomyces lividans 66 is linear. Mol. Microbiol. 10: 923-933.
    • (1993) Mol. Microbiol. , vol.10 , pp. 923-933
    • Lin, Y.S.1    Kieser, H.M.2    Hopwood, D.A.3    Chen, C.W.4
  • 37
    • 0033613820 scopus 로고    scopus 로고
    • Inversion/dimerization of plasmids mediated by inverted repeats
    • Lyu, Y.L., Lin, C.T., and Liu, L.F. 1999. Inversion/dimerization of plasmids mediated by inverted repeats. J. Mol. Biol. 285: 1485-1501.
    • (1999) J. Mol. Biol. , vol.285 , pp. 1485-1501
    • Lyu, Y.L.1    Lin, C.T.2    Liu, L.F.3
  • 38
    • 0027152244 scopus 로고
    • Sister chromatid fusion initiates amplification of the dihydrofolate reductase gene in Chinese hamster cells
    • Ma, C., Martin, S., Trask, B., and Hamlin, J.L. 1993. Sister chromatid fusion initiates amplification of the dihydrofolate reductase gene in Chinese hamster cells. Genes & Dev. 7: 605-620.
    • (1993) Genes & Dev. , vol.7 , pp. 605-620
    • Ma, C.1    Martin, S.2    Trask, B.3    Hamlin, J.L.4
  • 39
    • 0031745876 scopus 로고    scopus 로고
    • Recombination between the linear plasmid pPZG101 and the linear chromosome of Streptomyces rimosus can lead to exchange of ends
    • Pandza, S., Biukovic, G., Paravic, A., Dadbin, A., Cullum, J., and Hranueli, D. 1998. Recombination between the linear plasmid pPZG101 and the linear chromosome of Streptomyces rimosus can lead to exchange of ends. Mol. Microbiol. 28: 1165-1176.
    • (1998) Mol. Microbiol. , vol.28 , pp. 1165-1176
    • Pandza, S.1    Biukovic, G.2    Paravic, A.3    Dadbin, A.4    Cullum, J.5    Hranueli, D.6
  • 40
    • 0023358025 scopus 로고
    • Structure of an inverted duplication formed as a first step in a gene amplification event: Implications for a model of gene amplification
    • Passananti, C., Davies, B., Ford, M., and Fried, M. 1987. Structure of an inverted duplication formed as a first step in a gene amplification event: Implications for a model of gene amplification. EMBO J. 6: 1697-1703.
    • (1987) EMBO J. , vol.6 , pp. 1697-1703
    • Passananti, C.1    Davies, B.2    Ford, M.3    Fried, M.4
  • 41
    • 0031832970 scopus 로고    scopus 로고
    • Replication at the telomeres of the Streptomyces linear plasmid pSLA2
    • Qin, Z. and Cohen, S.N. 1998. Replication at the telomeres of the Streptomyces linear plasmid pSLA2. Mol. Microbiol. 28: 893-903.
    • (1998) Mol. Microbiol. , vol.28 , pp. 893-903
    • Qin, Z.1    Cohen, S.N.2
  • 42
    • 0030756511 scopus 로고    scopus 로고
    • Organization, generation and replication of amphimeric genomes: A review
    • Rayko, E. 1997. Organization, generation and replication of amphimeric genomes: A review. Gene 199: 1-18.
    • (1997) Gene , vol.199 , pp. 1-18
    • Rayko, E.1
  • 43
    • 0025135456 scopus 로고
    • Invertrons, a class of structurally and functionally related genetic elements that includes linear DNA plasmids, transposable elements, and genomes of adeno-type viruses
    • Sakaguchi, K. 1990. Invertrons, a class of structurally and functionally related genetic elements that includes linear DNA plasmids, transposable elements, and genomes of adeno-type viruses. Microbiol. Rev. 54: 66-74.
    • (1990) Microbiol. Rev. , vol.54 , pp. 66-74
    • Sakaguchi, K.1
  • 45
    • 0027218485 scopus 로고
    • Regulation and mechanisms of mammalian gene amplification
    • Stark, G.R. 1993. Regulation and mechanisms of mammalian gene amplification. Adv. Cancer Res. 61: 87-113.
    • (1993) Adv. Cancer Res. , vol.61 , pp. 87-113
    • Stark, G.R.1
  • 46
    • 0022550294 scopus 로고
    • Resistance to antimycin A in yeast by amplification of ADH4 on a linear, 42-kb palindromic plasmid
    • Walton, J.D., Paquin, C.E., Kaneko, K., and Williamson, V.M., 1986. Resistance to antimycin A in yeast by amplification of ADH4 on a linear, 42-kb palindromic plasmid. Cell 46: 857-863.
    • (1986) Cell , vol.46 , pp. 857-863
    • Walton, J.D.1    Paquin, C.E.2    Kaneko, K.3    Williamson, V.M.4
  • 47
    • 0026018901 scopus 로고
    • A central role for chromosome breakage in gene amplification, deletion formation, and amplicon integration
    • Windle, B., Draper, B.W., Yin, Y.X., O'Gorman, S., and Wahl, G.M. 1991. A central role for chromosome breakage in gene amplification, deletion formation, and amplicon integration. Genes & Dev. 5: 160-174.
    • (1991) Genes & Dev. , vol.5 , pp. 160-174
    • Windle, B.1    Draper, B.W.2    Yin, Y.X.3    O'Gorman, S.4    Wahl, G.M.5
  • 48
    • 0026045892 scopus 로고
    • Short inverted repeats at a free end signal large palindromic DNA formation in Tetrahymena
    • Yasuda, L.F. and Yao, M.C. 1991. Short inverted repeats at a free end signal large palindromic DNA formation in Tetrahymena. Cell 67: 505-516.
    • (1991) Cell , vol.67 , pp. 505-516
    • Yasuda, L.F.1    Yao, M.C.2
  • 49
    • 0024296696 scopus 로고
    • Site-specific degradation of Streptomyces lividans DNA during electrophoresis in buffers contaminated with ferrous iron
    • Zhou, X., Deng, Z., Firmin, J.L., Hopwood, D.A., and Kieser, T. 1988. Site-specific degradation of Streptomyces lividans DNA during electrophoresis in buffers contaminated with ferrous iron. Nucleic Acids Res. 16: 4341-4352.
    • (1988) Nucleic Acids Res. , vol.16 , pp. 4341-4352
    • Zhou, X.1    Deng, Z.2    Firmin, J.L.3    Hopwood, D.A.4    Kieser, T.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.