Replication of the linear chromosomal DNA from the centrally located oriC of Streptomyces ambofaciens revealed by PFGE gene dosage analysis

Research in Microbiology

Volumn 149, Issue 3, 1998, Pages 203-210

  Fischer, G ^a   Holl, A C ^b   Volff, J N ^c   Vandewiele, D ^d   Decaris, B ^a   Leblond, P ^a  

^a UNIVERSITÉ DE LORRAINE   (France)

^b UNIV LILLE   (France)

^c UNIVERSITY OF WÜRZBURG   (Germany)

^d EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH AND HUMAN DEVELOPMENT   (United States)

Author keywords

Linear chromosome, Replication, PFGE; Streptomyces ambofaciens, OriC

Indexed keywords

BACTERIAL DNA; DNA FRAGMENT;

ARTICLE; BACTERIAL GROWTH; CHROMOSOME REPLICATION; COSMID; DNA REPLICATION ORIGIN; GENE DOSAGE; NONHUMAN; PRIORITY JOURNAL; PULSED FIELD GEL ELECTROPHORESIS; RESTRICTION MAPPING; STREPTOMYCES;

ACTINOBACTERIA (CLASS); BACTERIA (MICROORGANISMS); STREPTOMYCES; STREPTOMYCES AMBOFACIENS; UNCULTURED ACTINOMYCETE; UNIDENTIFIED BACTERIOPHAGE;

EID: 0032030865     PISSN: 09232508     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0923-2508(98)80080-6     Document Type: Article

References (31)

1. Berger, F., Fischer, G., Kyriacou, A., Decaris, B. & Leblond, P. (1996), Mapping of the ribosomal operons on the linear chromosomal DNA of Streptomyces ambofaciens DSM40697. FEMS Microbiol. Lett., 143, 167-173.
2. Boyer, H.W. & Roulland-Dussoix, D. (1969), A complementation analysis of the restriction and modification of DNA in Escherichia coli. J. Mol. Biol., 41, 459-472.
3. Brewer, B.J. (1988), When polymerases collide: replication and the transcriptional organization of the E. coli chromosome. Cell, 53, 679-686.
4. Burton, K. (1956), A study of the conditions and mechanism of the diphenylamine reaction for the colorimetric reaction estimation of deoxyribonucleic acid. Biochem. J., 9, 652-656.
5. Calcutt, M.J. (1994), Gene organization in the dnaA-gyrA region of the Streptomyces coelicolor chromosome. Gene, 151, 23-28.
6. Calcutt, M.J. & Schmidt, F.J. (1992), Conserved gene arrangement in the origin region of the Streptomyces coelicolor chromosome. J. Bacteriol., 174, 3220-3226.
7. Chang, P.-C. & Cohen, S.N. (1994), Bidirectional replication from an internal origin in a linear Streptomyces plasmid. Science, 265, 952-954.
8. Chu, G., Vollrath, D. & Davis, R.W. (1986), Separation of large DNA molecules by contour-clamped homogeneous electric fields. Science, 234, 1582-1585.
9. Demuyter, P., Leblond, P., Decaris, B. & Simonet, J.-M. (1988), Characterization of two families of spontaneously amplifiable units of DNA in Streptomyces ambofaciens. J. Gen. Microbiol., 134, 2001-2007.
10. Fischer, G., Decaris, B. & Leblond, P. (1997), Occurrence of deletions, associated with genetic instability in Streptomyces ambofaciens, is independent of the linearity of the chromosomal DNA. J. Bacteriol., 179, 4553-4558.
11. Hohn, B. & Collins, B. (1980), Small cosmid for efficient cloning of large DNA fragments. Gene, 11, 291-298.
12. Hopwood, D.A., Bibb, M.J., Chater, K.F., Kieser, T., Bruton, C.J., Kieser, H.M., Lydiate, D.J., Smith, C.J., Ward, J.M. & Schrempf, H. (1985), Genetic manipulation of Streptomyces: a laboratory manual. John Innes Foundation, Norwich, England.
13. Hütter, R. (1967), Systematik der Streptomyceten. Karger Verlag, Basel.
14. Kieser, H.M., Kieser, T. & Hopwood, D.A. (1992), A combined genetic and physical map of the Streptomyces coelicolor A3(2) chromosome. J. Bacteriol., 174, 5496-5507.
15. Leblond, P., Fischer, G., Francou, F.X., Berger, F., Guérineau, M. & Decaris, B. (1996), The unstable region of Streptomyces ambofaciens includes 210 kb terminal inverted repeats flanking the extremities of the linear chromosome. Mol. Microbiol., 19, 261-271.
16. Leblond, P., Francou, F.X., Simonet, J.-M. & Decaris, B. (1990), Pulsed-field gel analysis of the genome of Streptomyces ambofaciens strains. FEMS Microbiol. Lett., 12, 79-88.
17. Leblond, P., Redenbach, M. & Cullum, J. (1993), Physical map of the Streptomyces lividans 66 genome and comparison with that of the related strain Streptomyces coelicolor A3(2). J. Bacteriol., 175, 3422-3429.
18. Lezhava, A., Mizukami, T., Kajitani, T., Kameoka, D., Redenbach, M., Shinkawa, H., Nimi, O. & Kinashi, H. (1995), Physical map of the linear chromosome of Streptomyces griseus. J. Bacteriol., 177, 6492-6498.
19. Lin, Y.-S., Kieser, H.M., Hopwood, D.A. & Chen, C.W. (1993), The chromosomal DNA of Streptomyces lividans is linear. Mol. Microbiol., 10, 923-933.
20. Musialowski, M.S., Flett, F., Scott, G.B., Hobbs, G., Smith, C.P. & Oliver, S.G. (1994), Functional evidence that the principal DNA replication origin of the Streptomyces coelicolor chromosome is close to the dnaA-gyrB region. J. Bacteriol., 176, 5123-5125.
21. Pandza, K., Pflazer, G., Cullum J. & Hranueli, D. (1997), Physical mapping shows that the unstable oxytetracycline gene cluster of Streptomyces rimosus lies close to one end of the linear chromosome. Microbiology, 143, 1496-1501.
22. Pinnert-Sindico, S., Ninet, L., Preud'homme, J. & Cosar, C. (1955), A new antibiotic: spiramycin. Antibiot. An. 1954-1955, 724-727.
23. Redenbach, M., Kieser, H.M., Denapaite, D., Eichner, A., Cullum, J., Kinashi, H. & Hopwood, D.A. (1996), A set of ordered cosmids and a detailed genetic and physical map for the 8 Mb Streptomyces coelicolor A3(2) chromosome. Mol. Microbiol., 21, 77-96.
24. Reece, R.J. & Maxwell, A. (1991), DNA gyrase: structure and function. CRC Crit. Rev. Biochem. Mol. Biol., 26, 335-375.
25. Sakaguchi, K. (1990), Invertrons, a class of structurally and functionally related genetic elements that include linear DNA plasmids, transposable elements, and genomes of adeno-type viruses. Microbiol. Rev., 54, 66-74.
26. Salas, M. (1991), Protein-priming of DNA replication. Annu. Rev. Biochem., 60, 39-71.
27. nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, New-York.
28. Smith, G.E. & Summers, M.D. (1980), The bidirectional transfer of DNA and RNA to nitrocellulose or diazobenzyloxymethyl paper. Anal. Biochem., 109, 123-129.
29. Thiara, A.S. & Cundliffe, E. (1993), Expression and analysis of two gyrB genes from the novobiocin producer, Streptomyces sphaeroides. Mol. Microbiol., 8, 495-506.
30. Yanisch-Perron, C., Viera, J. & Messing, J. (1985), Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene, 33, 103-199.
31. Zakrzewka-Czerwinska, J. & Schrempf, H. (1992), Characterization of an autonomously replicating region from the Streptomyces lividans chromosome. J. Bacteriol., 174, 2688-2693.