Solution structure of the chitin-binding domain of Bacillus circulans WL-12 chitinase A1

Journal of Biological Chemistry

Volumn 275, Issue 18, 2000, Pages 13654-13661

  Ikegami, Takahisa ^a   Okada, Terumasa ^a   Hashimoto, Masayuki ^b   Seino, Shizuka ^b   Watanabe, Takeshi ^b   Shirakawa, Masahiro ^a  

^a NARA INSTITUTE OF SCIENCE AND TECHNOLOGY   (Japan)

^b NIIGATA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CHITIN; CHITINASE; GLUCAN SYNTHASE;

AMINO TERMINAL SEQUENCE; ANIMAL CELL; ARTICLE; BACILLUS CIRCULANS; BACTERIAL CELL WALL; CATALYSIS; COVALENT BOND; CRYSTALLIZATION; ENZYME STRUCTURE; GRAM POSITIVE BACTERIUM; HYDROPHOBICITY; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN TERTIARY STRUCTURE;

AMINO ACID SEQUENCE; BACILLUS; BACTERIAL PROTEINS; BINDING SITES; CHITIN; CHITINASE; MOLECULAR SEQUENCE DATA; PROTEIN BINDING; PROTEIN CONFORMATION; SEQUENCE ALIGNMENT;

ANIMALIA; BACILLUS CIRCULANS; BACTERIA (MICROORGANISMS); ERWINIA; ERWINIA CHRYSANTHEMI; POSIBACTERIA;

EID: 0034608015     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.275.18.13654     Document Type: Article

References (58)

1. Jolles, P., and Muzzarelli, R. A. A. (1999) Chitin and Chitinases, Birkhäuser Verlag, Basel
2. Boller, T. (1985) in Cellular and Molecular Biology of Plant Stress (Key, J. L., and Kosuge, T., eds) pp. 247-262, Alan R. Liss Inc., New York
3. Tanaka, H., and Phaff, H. J. (1976) J. Bacteriol. 89, 1570-1580
4. Watanabe, T., Oyanagi, W., Suzuki, K., and Tanaka, H. (1990) J. Bacteriol. 172, 4017-4022
5. Alam, M. M., Mizutani, T., Isono, M., Nikaidou, N., and Watanabe, T. (1996) J. Ferment. Bioeng. 82, 28-36
6. Watanabe, T., Ito, Y., Yamada, T., Hashimoto, M., Sekine, S., and Tanaka, H. (1994) J. Bacteriol. 176, 4465-4472
7. Cohen-Kupiec, R., and Chet, I. (1998) Curr. Opin. Biotechnol. 9, 270-277
8. Brun, E., Moriaud, F., Gans, P., Blackledge, M. J., Barras, F., and Marion, D. (1997) Biochemistry 36, 16074-16086
9. Reinikainen, T., Ruohonen, L., Nevanen, T., Laaksonen, L., Kraulis, P., Jones, T. A., Knowles, J. K., and Teeri, T. T. (1992) Proteins 14, 475-482
10. Nagy, T., Simpson, P., Williamson, M. P., Hazlewood, G. P., Gilbert, H. J., and Orosz, L. (1998) FEBS Lett. 429, 312-316
11. Watanabe, T., Kasahara, N., Aida, K., and Tanaka, H. (1992) J. Bacteriol. 174, 186-190
12. Tsujibo, H., Orikoshi, H., Tanno, H., Fujimoto, K., Miyamoto, K., Imada, C., Okami, Y., and Inamori, Y. (1993) J. Bacteriol. 175, 176-181
13. Gilkes, N. R., Warren, R. A., Miller, R. C., Jr., and Kilburn, D. G. (1988) J. Biol. Chem. 263, 10401-10407
14. Tomme, P., Van Tilbeurgh, H., Pettersson, G., Van Damme, J., Vandekerckhove, J., Knowles, J., Teeri, T., and Claeyssens, M. (1988) Eur. J. Biochem. 170, 575-581
15. Din, N., Gilkes, N. R., Tekant, B., Miller, R. C., Warren, R. A. J., and Kilburn, D. G. (1991) Bio/Technology 9, 1096-1099
16. Mattinen, M. L., Kontteli, M., Kerovuo, J., Linder, M., Annila, A., Lindeberg, G., Reinikainen, T., and Drakenberg, T. (1997) Protein Sci. 6, 294-303
17. Mattinen, M. L., Linder, M., Drakenberg T., and Annila, A. (1998) Eur. J. Biochem. 256, 279-286
18. Xu, G. Y., Ong, E., Gilkes, N. R., Kilburn, D. G., Muhandiram, D. R., Harris-Brandts, M., Carver, J. P., Kay, L. E., and Harvey, T. S. (1995) Biochemistry 34, 6993-7009
19. Johnson, P. E., Tomme, P., Joshi, M. D., and McIntosh, L. P. (1996) Biochemistry 35, 13895-13906
20. Tormo, J., Lamed, R., Chirino, A. J., Morag, E., Bayer, E. A., Shoham, Y., and Steitz, T. A. (1996) EMBO J. 15, 5739-5751
21. Sakon, J., Irwin, D., Wilson, D. B., and Karplus, P. A. (1997) Nat. Struct. Biol. 4, 810-818
22. Hart, P. J., Pfluger, H. D., Monzingo, A. F., Hollis, T., and Robertus, J. D. (1995) J. Mol. Biol. 248, 402-413
23. Scheltinga A. C. T., Hennig, M., and Dijkstra, B. W. (1996) J. Mol. Biol. 262, 243-257
24. Perrakis, A., Tews, I., Dauter, Z., Oppenheim, A. B., Chet, I., Wilson, K. S., and Vorgias, C. E. (1994) Structure 2, 1169-1180
25. Simpson, H. D., and Barras, F. (1999) J. Bacteriol. 181, 4611-4616
26. Cavanagh, J., Fairbrother, W. J., Palmer, A. G., III, and Skelton, N. J. (1996) Protein NMR Spectroscopy, Academic Press, Inc., San Diego
27. Theis, K., Dingley, A. J., Hoffmann, A., Omichinski, J. G., and Grzesiek, S. (1997) J. Biomol. NMR 10, 403-408
28. Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J., and Bax, A. (1995) J. Biomol. NMR 6, 277-293
29. Garrett, D. S., Powers, R., Gronenborn, A. M., and Clore, G. M. (1991) J. Magn. Reson. 95, 214-220
30. Hu, W., and Zuiderweg, E. R. P. (1996) J. Magn. Reson. B113, 70-75
31. Wüthrich, K. (1986) NMR of Proteins and Nucleic Acids, John Wiley & Sons, Inc., New York
32. Weber, P. L. (1996) in NMR Spectroscopy and Its Application to Biomedical Research (Sarkar, S. K., ed) pp. 187-239, Elsevier, Amsterdam
33. Güntert, P. (1997) Methods Mol. Biol. 60, 157-194
34. Guntert, P., Mumenthaler, C., and Wüthrich, K. (1997) J. Mol. Biol. 273, 283-298
35. Brünger, A. T. (1993) X-PLOR 3.1: A System for X-ray Crystallography and NMR, Yale University Press, New Haven, CT
36. Koradi, R., Billeter, M., and Wüthrich, K. (1996) J. Mol. Graph. 14, 51-55
37. Laskowski, R. A., Rullmann, J. A. C., MacArthur, M. W., Kaptein, R., and Thornton, J. M. (1996) J. Biomol. NMR 8, 477-486
38. Wishart, D. S., and Sykes, B. (1994) Methods Enzymol. 239, 363-392
39. Holm, L., and Sander, C. (1993) J. Mol. Biol. 233, 123-138
40. Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994) Nucleic Acids Res. 22, 4673-4680
41. Mattinen, M. L., Linder, M., Teleman, A., and Annila, A. (1997) FEBS Lett. 407, 291-296
42. Bray, M. R., Johnson, P. E., Gilkes, N. R., McIntosh, L. P., Kilburn, D. G., and Warren, R. A. J. (1996) Protein Sci. 5, 2311-2318
43. Goldstein, M. A., Takagi, M., Hashida, S., Shoseyov, O., Doi, R. H., and Segel, I. H. (1993) J. Bacteriol. 175, 5762-5768
44. Linder, M., Salovuori, I., Ruohonen, L., and Teeri, T. T. (1996) J. Biol. Chem. 271, 21268-21272
45. Tomme, P., Gilkes, N. R., Miller, R. C. Jr., Warren, A. J., and Kilburn, D. G. (1994) Protein Eng. 7, 117-123
46. Linder, M., Mattinen, M. L., Kontteli, M., Lindeberg, G., Stahlberg, J., Drakenberg, T., Reinikainen, T., Pettersson, G., and Annila, A. (1995) Protein Sci. 4, 1056-1064
47. Suzuki, K., Suzuki, M., Taiyoji, M., Nikaidou, N., and Watanabe, T. (1998) Biosci. Biotechnol. Biochem. 62, 128-135
48. Perrakis, A., Ouzounis, C., and Wilson, K. S. (1997) Fold. Des. 2, 291-294
49. Watanabe, T., Suzuki, K., Oyanagi, W., Ohnishi, K., and Tanaka, H. (1990) J. Biol. Chem. 265, 15659-15665
50. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 946-950
51. Merritt, E. A., and Bacon, D. J. (1997) Methods Enzymol. 277, 505-524
52. Nicholls, A., Sharp, K. A., and Honig, B. (1991) Proteins Struct. Funct. Genet. 11, 281-296
53. Watanabe, T., Oyanagi, W., Suzuki, K., Ohnishi, K., and Tanaka, H. (1992) J. Bacteriol. 174, 408-414
54. Suzuki, K., Taiyoji, M., Sugawara, N., Nikaidou, N., Henrissat, B., and Watanabe, T. (1999) Biochem J. 343, 587-596
55. Ueda, M., Kawaguchi, T., and Arai, M. (1994) J. Ferment. Bioeng. 78, 205-211
56. Gleave, A. P., Taylor, R. K., Morris, B. A. M., and Greenwood, D. R. (1995) FEMS Microbiol. Lett. 131, 279-288
57. Shiro, M., Ueda, M., Kawaguchi, T., and Arai, M. (1996) Biochim. Biophys. Acta 1305, 44-48
58. Sitrit, Y., Vorgias, C. E., Chet, I., Oppenheim, A. B. (1995) J. Bacteriol. 177, 4187-4189