-
1
-
-
0025941284
-
Sequence-selective DNA recognition by synthetic ligands
-
Nielsen, E.P. (1991) Sequence-selective DNA recognition by synthetic ligands. Bioconjugate Chem. 2, 1-12.
-
(1991)
Bioconjugate Chem.
, vol.2
, pp. 1-12
-
-
Nielsen, E.P.1
-
2
-
-
0032170961
-
Sequence-specific DNA minor groove binders. Design and synthesis of netropsin and distamycin analogues
-
Bailly, Ch. & Chaires, J.B. (1998) Sequence-specific DNA minor groove binders. Design and synthesis of netropsin and distamycin analogues. Bioconjugate Chem. 9, 513-538.
-
(1998)
Bioconjugate Chem.
, vol.9
, pp. 513-538
-
-
Bailly, Ch.1
Chaires, J.B.2
-
3
-
-
0031424230
-
Crystallographic insights into DNA minor groove recognition by drugs
-
Neidle, S. (1997) Crystallographic insights into DNA minor groove recognition by drugs. Biopolymers 44, 105-121.
-
(1997)
Biopolymers
, vol.44
, pp. 105-121
-
-
Neidle, S.1
-
4
-
-
0028363989
-
Different binding mode in AT and GC sequences for unfused-aromatic dications
-
Tanious, F.A., Spychala, J., Kumar, A., Greene, K., Boykin, D.W. & Wilson, W.D. (1994) Different binding mode in AT and GC sequences for unfused-aromatic dications. J. Biomol. Struct. Dyn. 11, 1063-1083.
-
(1994)
J. Biomol. Struct. Dyn.
, vol.11
, pp. 1063-1083
-
-
Tanious, F.A.1
Spychala, J.2
Kumar, A.3
Greene, K.4
Boykin, D.W.5
Wilson, W.D.6
-
5
-
-
0021959842
-
The molecular origin of DNA-drug specificity of netropsin and distamycin
-
Kopka, M.L., Yoon, C., Goodsell, D., Pjura, P. & Dickerson, R.E. (1985) The molecular origin of DNA-drug specificity of netropsin and distamycin. Proc. Natl. Acad. Sci. U.S.A. 82, 1376-1380.
-
(1985)
Proc. Natl. Acad. Sci. U.S.A.
, vol.82
, pp. 1376-1380
-
-
Kopka, M.L.1
Yoon, C.2
Goodsell, D.3
Pjura, P.4
Dickerson, R.E.5
-
6
-
-
0021109028
-
Theoretical studies of the selective binding to DNA of two nonintercalating ligands: Netropsin and SN 18071
-
Zakrzewska, K., Lavery, R. & Pullman, B. (1984) Theoretical studies of the selective binding to DNA of two nonintercalating ligands: Netropsin and SN 18071. Nucleic Acids Res. 11, 8825-8839.
-
(1984)
Nucleic Acids Res.
, vol.11
, pp. 8825-8839
-
-
Zakrzewska, K.1
Lavery, R.2
Pullman, B.3
-
7
-
-
0028942445
-
Design and development of sequence selective lexitropsin DNA minor groove binders
-
Lown, J.W. (1995) Design and development of sequence selective lexitropsin DNA minor groove binders. Drug Development Res. 34, 145-183.
-
(1995)
Drug Development Res.
, vol.34
, pp. 145-183
-
-
Lown, J.W.1
-
8
-
-
0031221405
-
Progress in the design of DNA sequence-specific lexitropsins
-
Walker, W.L., Kopka, M.L. & Goodsell, D.S. (1997) Progress in the design of DNA sequence-specific lexitropsins. Biopolymers 44, 323-334.
-
(1997)
Biopolymers
, vol.44
, pp. 323-334
-
-
Walker, W.L.1
Kopka, M.L.2
Goodsell, D.S.3
-
9
-
-
0033577001
-
Effects of γ-turn and β-tail amino acids on sequence-specific recognition of DNA by hairpin polyamides
-
Swalley, S.E., Baird, E.E. & Dervan, P.B. (1999) Effects of γ-turn and β-tail amino acids on sequence-specific recognition of DNA by hairpin polyamides. J. Am. Chem. Soc. 121, 1113-1129.
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 1113-1129
-
-
Swalley, S.E.1
Baird, E.E.2
Dervan, P.B.3
-
10
-
-
0031604991
-
Synthetic analogues of netropsin and distamycin - Synthesis of a new pyridine and carbocyclic analogues of the pyrrolecarboxamide antitumour antibiotics
-
Bartulewicz, D., Bielawski, K., Markowska, A., Zwierz, K. & Rózański, A. (1998) Synthetic analogues of netropsin and distamycin - synthesis of a new pyridine and carbocyclic analogues of the pyrrolecarboxamide antitumour antibiotics. Acta Biochim. Polon. 45, 41-57.
-
(1998)
Acta Biochim. Polon.
, vol.45
, pp. 41-57
-
-
Bartulewicz, D.1
Bielawski, K.2
Markowska, A.3
Zwierz, K.4
Rózański, A.5
-
11
-
-
0032910807
-
Polybenzamide mustards; structure-activity relationships for DNA sequence-specific alkylation
-
Turner, P.R., Ferguson, L.R. & Denny, W.A. (1999) Polybenzamide mustards; Structure-activity relationships for DNA sequence-specific alkylation. Anti-Cancer Drug Des. 14, 61-70.
-
(1999)
Anti-Cancer Drug Des.
, vol.14
, pp. 61-70
-
-
Turner, P.R.1
Ferguson, L.R.2
Denny, W.A.3
-
12
-
-
0033655542
-
Molecular modelling, synthesis and antitumor activity of carbocyclic analogues of netropsin and distamycin - New carriers of alkylating elements
-
Bartulewicz, D., Wołczyński, S., Dabrowska, M. & Różański, A. (2000) Molecular modelling, synthesis and antitumor activity of carbocyclic analogues of netropsin and distamycin - new carriers of alkylating elements. Acta Biochim. Polon. 47, 23-35.
-
(2000)
Acta Biochim. Polon.
, vol.47
, pp. 23-35
-
-
Bartulewicz, D.1
Wołczyński, S.2
Dabrowska, M.3
Rózański, A.4
-
13
-
-
0019387686
-
Structure of a B-DNA dodecamer II. Influence of base sequence on helix structure
-
Dickerson, R.E. & Drew, H.R. (1981) Structure of a B-DNA dodecamer II. Influence of base sequence on helix structure. J. Mol. Biol. 149, 761-786.
-
(1981)
J. Mol. Biol.
, vol.149
, pp. 761-786
-
-
Dickerson, R.E.1
Drew, H.R.2
-
14
-
-
0000882951
-
Internal coordinate modeling of DNA: Force field comparisons
-
Flatters, D., Zakrzewska, K. & Lavery, R. (1997) Internal coordinate modeling of DNA: Force field comparisons. J. Comput. Chem. 18, 1043-1055.
-
(1997)
J. Comput. Chem.
, vol.18
, pp. 1043-1055
-
-
Flatters, D.1
Zakrzewska, K.2
Lavery, R.3
-
15
-
-
0021757436
-
A new force-field for molecular mechanical simulation of nucleic acids and proteins
-
Weiner, S.J., Kollman, P.A., Case, D.A., Singh, U.C., Ghio, G., Alagano, G., Profeta, S. & Weiner, P. (1984) A new force-field for molecular mechanical simulation of nucleic acids and proteins. J. Am. Chem. Soc. 108, 765-784.
-
(1984)
J. Am. Chem. Soc.
, vol.108
, pp. 765-784
-
-
Weiner, S.J.1
Kollman, P.A.2
Case, D.A.3
Singh, U.C.4
Ghio, G.5
Alagano, G.6
Profeta, S.7
Weiner, P.8
-
16
-
-
84988053694
-
An all atom force field for simulations of proteins and nucleic acids
-
Weiner, S.J., Kollman, P.A., Nguyen, D.T. & Case, D.A. (1986) An all atom force field for simulations of proteins and nucleic acids. J. Comput. Chem. 7, 230-252.
-
(1986)
J. Comput. Chem.
, vol.7
, pp. 230-252
-
-
Weiner, S.J.1
Kollman, P.A.2
Nguyen, D.T.3
Case, D.A.4
-
17
-
-
84986439193
-
On the use of AMI and MNDO wavefunctions to compute accurate electrostatic charges
-
Orozco, M. & Luque, F.J. (1990) On the use of AMI and MNDO wavefunctions to compute accurate electrostatic charges. J. Comput. Chem. 11, 909-923.
-
(1990)
J. Comput. Chem.
, vol.11
, pp. 909-923
-
-
Orozco, M.1
Luque, F.J.2
-
18
-
-
0025086442
-
Molecular modelling of drug-DNA structures: The effects of differing dielectric treatment on helix parameters and comparison with a fully solvated structural model
-
Orozco, M., Laughton, C.A., Herzyk, P. & Neidle, S. (1990) Molecular modelling of drug-DNA structures: The effects of differing dielectric treatment on helix parameters and comparison with a fully solvated structural model. J. Biomol. Struct. Dyn. 8, 359-373.
-
(1990)
J. Biomol. Struct. Dyn.
, vol.8
, pp. 359-373
-
-
Orozco, M.1
Laughton, C.A.2
Herzyk, P.3
Neidle, S.4
-
19
-
-
84988075077
-
The multiple minimum problem in molecular modeling. Tree searching internal coordinate conformational space
-
Lipton, M. & Still, W.C. (1988) The multiple minimum problem in molecular modeling. Tree searching internal coordinate conformational space. J. Comput. Chem. 9, 345-355.
-
(1988)
J. Comput. Chem.
, vol.9
, pp. 345-355
-
-
Lipton, M.1
Still, W.C.2
-
20
-
-
0027122080
-
Minor-groove width and accessibility in B-DNA drug and protein complexes
-
Neidle, S. (1992) Minor-groove width and accessibility in B-DNA drug and protein complexes. FEBS Lett. 298, 97-99.
-
(1992)
FEBS Lett.
, vol.298
, pp. 97-99
-
-
Neidle, S.1
-
21
-
-
0031423949
-
Crystal studies of B-DNA: The answers and the questions
-
Berman, H.M. (1997) Crystal studies of B-DNA: The answers and the questions. Biopolymers 44, 23-44.
-
(1997)
Biopolymers
, vol.44
, pp. 23-44
-
-
Berman, H.M.1
-
22
-
-
0033591320
-
The mechanics of minor groove width variation in DNA, and its implications for the accommodation of ligands
-
Laughton, Ch. & Luisi, B. (1999) The mechanics of minor groove width variation in DNA, and its implications for the accommodation of ligands. J. Mol. Biol. 288, 953-963.
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 953-963
-
-
Laughton, Ch.1
Luisi, B.2
-
23
-
-
0023374851
-
Origins of netropsin binding affinity and specificity: Correlations of the thermodynamic and structural data
-
Marky, L. & Breslauer, K.J. (1987) Origins of netropsin binding affinity and specificity: Correlations of the thermodynamic and structural data. Proc. Natl. Acad. Sci. U.S.A. 84, 4359-4363.
-
(1987)
Proc. Natl. Acad. Sci. U.S.A.
, vol.84
, pp. 4359-4363
-
-
Marky, L.1
Breslauer, K.J.2
-
24
-
-
0031047279
-
Intrusion of counterions into the spine of hydration in the minor groove of B-DNA: Fractional occupancy of electronegative pockets
-
Young, M.A., Jayaram, B. & Beveridge, D.L. (1997) Intrusion of counterions into the spine of hydration in the minor groove of B-DNA: Fractional occupancy of electronegative pockets. J. Am. Chem. Soc. 119, 59-69.
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 59-69
-
-
Young, M.A.1
Jayaram, B.2
Beveridge, D.L.3
-
25
-
-
0033553117
-
Calculating the absolute free energy of association of netropsin and DNA
-
Singh, S.B. & Kollman, P.A. (1999) Calculating the absolute free energy of association of netropsin and DNA. J. Am. Chem. Soc. 121, 3267-3271.
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 3267-3271
-
-
Singh, S.B.1
Kollman, P.A.2
-
26
-
-
0028956354
-
Refinement of netropsin bound to DNA: Bias and feedback in electron density map interpretation
-
Goodsell, D.S., Kopka, M.L. & Dickerson, R.E. (1995) Refinement of netropsin bound to DNA: Bias and feedback in electron density map interpretation. Biochemistry 34, 4983-4993.
-
(1995)
Biochemistry
, vol.34
, pp. 4983-4993
-
-
Goodsell, D.S.1
Kopka, M.L.2
Dickerson, R.E.3
-
27
-
-
0021959842
-
The molecular origin of DNA-drug specificity in netropsin and distamycin
-
Kopka, M.L., Yoon, C., Goodsell, D., Pjura, P. & Dickerson, R.E. (1985) The molecular origin of DNA-drug specificity in netropsin and distamycin. Proc. Natl. Acad. Sci. U.S.A. 82, 1376-1380.
-
(1985)
Proc. Natl. Acad. Sci. U.S.A.
, vol.82
, pp. 1376-1380
-
-
Kopka, M.L.1
Yoon, C.2
Goodsell, D.3
Pjura, P.4
Dickerson, R.E.5
-
28
-
-
0033538542
-
Internal correlations in minor groove profiles of experimental and computed B-DNA conformations
-
Mazur, A.K. (1999) Internal correlations in minor groove profiles of experimental and computed B-DNA conformations. J. Mol. Biol. 290, 373-377.
-
(1999)
J. Mol. Biol.
, vol.290
, pp. 373-377
-
-
Mazur, A.K.1
-
29
-
-
0023006326
-
DNA-binding characteristics of a synthetic analogue of distamycin
-
Dasgupta, D., Rajagopalan, M. & Sasisekharan, V. (1986) DNA-binding characteristics of a synthetic analogue of distamycin. Biochim. Biophys. Res. Commun. 140, 626-631.
-
(1986)
Biochim. Biophys. Res. Commun.
, vol.140
, pp. 626-631
-
-
Dasgupta, D.1
Rajagopalan, M.2
Sasisekharan, V.3
-
30
-
-
0030924883
-
Two-ring DNA minor-groove binders consisting of readily available, di-substituted benzene derivatives
-
Yan, Y., Liu, M. & Gong, B. (1997) Two-ring DNA minor-groove binders consisting of readily available, di-substituted benzene derivatives. Bioorg. Med. Chem. Lett. 7, 1469-1474.
-
(1997)
Bioorg. Med. Chem. Lett.
, vol.7
, pp. 1469-1474
-
-
Yan, Y.1
Liu, M.2
Gong, B.3
-
31
-
-
0032558145
-
Minor groove hydration of DNA in solution: Dependence on base composition and sequence
-
Johannesson, H. & Halle, B. (1998) Minor groove hydration of DNA in solution: Dependence on base composition and sequence. J. Am. Chem. Soc. 120, 6859-6870.
-
(1998)
J. Am. Chem. Soc.
, vol.120
, pp. 6859-6870
-
-
Johannesson, H.1
Halle, B.2
-
32
-
-
0033594498
-
A "hydration" spine in a B-DNA minor groove
-
Tereshko, V., Minasov, G. & Egli, M. (1999) A "hydration" spine in a B-DNA minor groove. J. Am. Chem. Soc. 121, 3590-3595.
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 3590-3595
-
-
Tereshko, V.1
Minasov, G.2
Egli, M.3
|