-
1
-
-
0002638513
-
Protein Data Bank
-
F. H. Allen, G. Bergerhoff, & R. Sievers. Bonn, Cambridge, Chester: Data Commission of the International Union of Crystallography
-
Abola E., Bernstein F. C., Bryant S. H., Koetzle T. F., Weng J. Protein Data Bank. Allen F. H., Bergerhoff G., Sievers R. Crystallographic Databases - Information Content, Software Systems, Scientific Applications. 1987;107-132 Data Commission of the International Union of Crystallography, Bonn, Cambridge, Chester.
-
(1987)
Crystallographic Databases - Information Content, Software Systems, Scientific Applications
, pp. 107-132
-
-
Abola, E.1
Bernstein, F.C.2
Bryant, S.H.3
Koetzle, T.F.4
Weng, J.5
-
2
-
-
0029059536
-
DNA-sequence preferences of several AT-selective minor-groove binding ligands
-
Abudaya A., Brown P. M., Fox K. R. DNA-sequence preferences of several AT-selective minor-groove binding ligands. Nucl. Acids Res. 23:1995;3385-3392.
-
(1995)
Nucl. Acids Res.
, vol.23
, pp. 3385-3392
-
-
Abudaya, A.1
Brown, P.M.2
Fox, K.R.3
-
3
-
-
0030907883
-
Sequence-selective binding to DNA of bis(amidinophenoxy)alkanes related to propamidine and pentamidine
-
Bailly C., Perrine D., Lancelot J. C., Saturnino C., Robba M., Waring M. J. Sequence-selective binding to DNA of bis(amidinophenoxy)alkanes related to propamidine and pentamidine. Biochem. J. 323:1997;23-31.
-
(1997)
Biochem. J.
, vol.323
, pp. 23-31
-
-
Bailly, C.1
Perrine, D.2
Lancelot, J.C.3
Saturnino, C.4
Robba, M.5
Waring, M.J.6
-
4
-
-
0026698647
-
Groove width and depth of B -DNA structures depend on local variation in slide
-
Bhattacharyya D., Bansal M. Groove width and depth of B -DNA structures depend on local variation in slide. J. Biomol. Struct. Dynam. 10:1992;213-226.
-
(1992)
J. Biomol. Struct. Dynam.
, vol.10
, pp. 213-226
-
-
Bhattacharyya, D.1
Bansal, M.2
-
5
-
-
0025272657
-
Crystal structure of a berenil-dodecanucleotide complex: The role of water in sequence-specific ligand binding
-
Brown D. G., Sanderson M. R., Skelly J. V., Jenkins T. C., Brown T., Garman E., Stuart D. I., Neidle S. Crystal structure of a berenil-dodecanucleotide complex: the role of water in sequence-specific ligand binding. EMBO J. 9:1990;1329-1334.
-
(1990)
EMBO J.
, vol.9
, pp. 1329-1334
-
-
Brown, D.G.1
Sanderson, M.R.2
Skelly, J.V.3
Jenkins, T.C.4
Brown, T.5
Garman, E.6
Stuart, D.I.7
Neidle, S.8
-
6
-
-
0020385863
-
Mechanics of sequence-dependent stacking of bases in B -DNA
-
Calladine C. R. Mechanics of sequence-dependent stacking of bases in B -DNA. J. Mol. Biol. 161:1982;343-352.
-
(1982)
J. Mol. Biol.
, vol.161
, pp. 343-352
-
-
Calladine, C.R.1
-
8
-
-
0024599312
-
Definitions and nomenclature of nucleic acid structure components
-
Dickerson R. E. Definitions and nomenclature of nucleic acid structure components. Nucl. Acids Res. 17:1989;1797-1803.
-
(1989)
Nucl. Acids Res.
, vol.17
, pp. 1797-1803
-
-
Dickerson, R.E.1
-
9
-
-
0019558179
-
Structure of a B -DNA dodecamer - conformation and dynamics
-
Drew H. R., Wing R. M., Takano T., Broka C., Tanaka S., Itakura K., Dickerson R. E. Structure of a B -DNA dodecamer - conformation and dynamics. Proc. Natl Acad. Sci. USA. 78:1981;2179-2183.
-
(1981)
Proc. Natl Acad. Sci. USA
, vol.78
, pp. 2179-2183
-
-
Drew, H.R.1
Wing, R.M.2
Takano, T.3
Broka, C.4
Tanaka, S.5
Itakura, K.6
Dickerson, R.E.7
-
11
-
-
0026707681
-
Crystal structure of a pentamidine-oligonucleotide complex: Implications for DNA-binding properties
-
Edwards K. J., Jenkins T. C., Neidle S. Crystal structure of a pentamidine-oligonucleotide complex: implications for DNA-binding properties. Biochemistry. 31:1992;7104-7109.
-
(1992)
Biochemistry
, vol.31
, pp. 7104-7109
-
-
Edwards, K.J.1
Jenkins, T.C.2
Neidle, S.3
-
12
-
-
3142518260
-
Conformational characteristics of DNA: Empirical classifications and a hypothesis for the conformational behaviour of dinucleotide steps
-
El Hassan M. A., Calladine C. R. Conformational characteristics of DNA: empirical classifications and a hypothesis for the conformational behaviour of dinucleotide steps. Phil. Trans. Roy. Soc. London. 355:1997;43-100.
-
(1997)
Phil. Trans. Roy. Soc. London
, vol.355
, pp. 43-100
-
-
El Hassan, M.A.1
Calladine, C.R.2
-
14
-
-
0029565563
-
Structure of a dicationic monoimidazole lexitropsin bound to DNA
-
Goodsell D. S., Ng H. L., Kopka M. L., Lown J. W., Dickerson R. E. Structure of a dicationic monoimidazole lexitropsin bound to DNA. Biochemistry. 34:1995;16654-16661.
-
(1995)
Biochemistry
, vol.34
, pp. 16654-16661
-
-
Goodsell, D.S.1
Ng, H.L.2
Kopka, M.L.3
Lown, J.W.4
Dickerson, R.E.5
-
15
-
-
0028931709
-
B -DNA twisting correlates with base pair morphology
-
Gorin A. A., Zhurkin V. E., Olson W. K. B -DNA twisting correlates with base pair morphology. J. Mol. Biol. 247:1995;34-48.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 34-48
-
-
Gorin, A.A.1
Zhurkin, V.E.2
Olson, W.K.3
-
17
-
-
84977299328
-
Anisotropic thermal-parameter refinement of the DNA dodecamer CGCGAATTCGCG by the segmented rigid-body method
-
Holbrook S. R., Dickerson R. E., Kim S. H. Anisotropic thermal-parameter refinement of the DNA dodecamer CGCGAATTCGCG by the segmented rigid-body method. Acta Crystallog. sect. B. 41:1985;255-262.
-
(1985)
Acta Crystallog. Sect. B
, vol.41
, pp. 255-262
-
-
Holbrook, S.R.1
Dickerson, R.E.2
Kim, S.H.3
-
18
-
-
0030590260
-
How proteins recognize the TATA box
-
Juo Z. S., Chiu T. K., Leiberman P. M., Baikalov I., Berks A. J., Dickerson R. E. How proteins recognize the TATA box. J. Mol. Biol. 261:1996;239-254.
-
(1996)
J. Mol. Biol.
, vol.261
, pp. 239-254
-
-
Juo, Z.S.1
Chiu, T.K.2
Leiberman, P.M.3
Baikalov, I.4
Berks, A.J.5
Dickerson, R.E.6
-
19
-
-
0027974851
-
1.9 Å resolution structure of TBP recognizing the minor groove of the TATA-box
-
Kim J. L., Burley S. K. 1.9 Å resolution structure of TBP recognizing the minor groove of the TATA-box. Nature Struct. Biol. 1:1994;638-645.
-
(1994)
Nature Struct. Biol.
, vol.1
, pp. 638-645
-
-
Kim, J.L.1
Burley, S.K.2
-
20
-
-
0024828309
-
The structure of DAPI bound to DNA
-
Larsen T. A., Goodsell D. S., Cascio D., Grzeskowiak K., Dickerson R. E. The structure of DAPI bound to DNA. J. Biomol. Struct. Dynam. 7:1989;477-491.
-
(1989)
J. Biomol. Struct. Dynam.
, vol.7
, pp. 477-491
-
-
Larsen, T.A.1
Goodsell, D.S.2
Cascio, D.3
Grzeskowiak, K.4
Dickerson, R.E.5
-
21
-
-
0029928846
-
2and 2,5-bis(4-guanylphenyl)furan, an analog of berenil - structural origins of enhanced DNA-binding affinity
-
2and 2,5-bis(4-guanylphenyl)furan, an analog of berenil - structural origins of enhanced DNA-binding affinity. Biochemistry. 35:1996;5655-5661.
-
(1996)
Biochemistry
, vol.35
, pp. 5655-5661
-
-
Laughton, C.A.1
Tanious, F.2
Nunn, C.M.3
Boykin, D.W.4
Wilson, W.D.5
Neidle, S.6
-
22
-
-
0027122080
-
Minor-groove width and accessibility in B -DNA drug and protein complexes
-
Neidle S. Minor-groove width and accessibility in B -DNA drug and protein complexes. FEBS Letters. 298:1992;97-99.
-
(1992)
FEBS Letters
, vol.298
, pp. 97-99
-
-
Neidle, S.1
-
23
-
-
0031424230
-
Crystallographic insights into DNA minor groove recognition by drugs
-
Neidle S. Crystallographic insights into DNA minor groove recognition by drugs. Biopolymers. 44:1997;105-121.
-
(1997)
Biopolymers
, vol.44
, pp. 105-121
-
-
Neidle, S.1
-
24
-
-
0028241531
-
Distinctive DNA conformation with enlarged major groove is found in Zn-finger-DNA and other protein-DNA complexes
-
Nekludova L., Pabo C. O. Distinctive DNA conformation with enlarged major groove is found in Zn-finger-DNA and other protein-DNA complexes. Proc. Natl Acad. Sci. USA. 91:1994;6948-6951.
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 6948-6951
-
-
Nekludova, L.1
Pabo, C.O.2
-
25
-
-
0023513912
-
The structure of an oligo(dA).oligo(dT) tract and its biological implications
-
Nelson H. C. M., Finch J. T., Luisi B. F., Klug A. The structure of an oligo(dA).oligo(dT) tract and its biological implications. Nature. 330:1987;221-226.
-
(1987)
Nature
, vol.330
, pp. 221-226
-
-
Nelson, H.C.M.1
Finch, J.T.2
Luisi, B.F.3
Klug, A.4
-
26
-
-
0027772178
-
Crystal structure of d(CGCGAATTCGCG) complexed with propamidine, a short-chain homologue of the drug pentamidine
-
Nunn C. M., Jenkins T. C., Neidle S. Crystal structure of d(CGCGAATTCGCG) complexed with propamidine, a short-chain homologue of the drug pentamidine. Biochemistry. 32:1993;13838-13843.
-
(1993)
Biochemistry
, vol.32
, pp. 13838-13843
-
-
Nunn, C.M.1
Jenkins, T.C.2
Neidle, S.3
-
27
-
-
0028670449
-
2- The effects of drug structural-change on DNA minor-groove recognition
-
2- the effects of drug structural-change on DNA minor-groove recognition. Eur. J. Biochem. 226:1994;953-961.
-
(1994)
Eur. J. Biochem.
, vol.226
, pp. 953-961
-
-
Nunn, C.M.1
Jenkins, T.C.2
Neldle, S.3
-
28
-
-
0032530555
-
DNA sequence-dependent deformability deduced from protein-DNA crystal complexes
-
Olson W. K., Gorin A. A., Lu X.-J., Hock L. M., Zhurkin V. B. DNA sequence-dependent deformability deduced from protein-DNA crystal complexes. Proc. Natl Acad. Sci. USA. 95:1998;11163-11168.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 11163-11168
-
-
Olson, W.K.1
Gorin, A.A.2
Lu, X.-J.3
Hock, L.M.4
Zhurkin, V.B.5
-
29
-
-
0032540859
-
Sequence-dependent DNA structure: The role of the sugar-phosphate backbone
-
Packer M. J., Hunter C. A. Sequence-dependent DNA structure: the role of the sugar-phosphate backbone. J. Mol. Biol. 280:1998;407-420.
-
(1998)
J. Mol. Biol.
, vol.280
, pp. 407-420
-
-
Packer, M.J.1
Hunter, C.A.2
-
30
-
-
0004279414
-
-
San Francisco: University of California
-
Pearlman D. A., Case D. A., Caldwell J. C., Ross W. S., Cheatham T. E., Ferguson D. M., Seibel G. L., Singh U. C., Weiner P. K., Kollman P. A. AMBER 4.1. 1995;University of California, San Francisco.
-
(1995)
AMBER 4.1
-
-
Pearlman, D.A.1
Case, D.A.2
Caldwell, J.C.3
Ross, W.S.4
Cheatham, T.E.5
Ferguson, D.M.6
Seibel, G.L.7
Singh, U.C.8
Weiner, P.K.9
Kollman, P.A.10
-
31
-
-
0031576353
-
The crystal structure of a parallel-stranded guanine tetraplex at 0.95 Å resolution
-
Phillips K., Dauter Z., Murchie A. I. H., Lilley D. M. J., Luisi B. The crystal structure of a parallel-stranded guanine tetraplex at 0.95 Å resolution. J. Mol. Biol. 273:1997;171-182.
-
(1997)
J. Mol. Biol.
, vol.273
, pp. 171-182
-
-
Phillips, K.1
Dauter, Z.2
Murchie, A.I.H.3
Lilley, D.M.J.4
Luisi, B.5
-
32
-
-
0023626977
-
Binding of Hoechst 33258 to the minor groove of B -DNA
-
Pjura P. E., Grzeskowiak K., Dickerson R. E. Binding of Hoechst 33258 to the minor groove of B -DNA. J. Mol. Biol. 197:1987;257-271.
-
(1987)
J. Mol. Biol.
, vol.197
, pp. 257-271
-
-
Pjura, P.E.1
Grzeskowiak, K.2
Dickerson, R.E.3
-
33
-
-
0025885778
-
Low-temperature crystallographic analyses of the binding of Hoechst 33258 to the double-helical DNA dodecamer C-G-C-G-A-A-T-T-C-G-C-G
-
Quintana J. R., Lipanov A. A., Dickerson R. E. Low-temperature crystallographic analyses of the binding of Hoechst 33258 to the double-helical DNA dodecamer C-G-C-G-A-A-T-T-C-G-C-G. Biochemistry. 30:1991;10294-10306.
-
(1991)
Biochemistry
, vol.30
, pp. 10294-10306
-
-
Quintana, J.R.1
Lipanov, A.A.2
Dickerson, R.E.3
-
34
-
-
0029930932
-
The width of the minor-groove affects the binding of the bisquaternary heterocycle SN-6999 to duplex DNA
-
Rydzewski J. M., Leupin W., Chazin W. The width of the minor-groove affects the binding of the bisquaternary heterocycle SN-6999 to duplex DNA. Nucl. Acids Res. 24:1996;1287-1293.
-
(1996)
Nucl. Acids Res.
, vol.24
, pp. 1287-1293
-
-
Rydzewski, J.M.1
Leupin, W.2
Chazin, W.3
-
35
-
-
0031195002
-
Conformations of the sugar-phosphate backbone in helical DNA crystal structures
-
Schneider B., Neidle S., Berman H. M. Conformations of the sugar-phosphate backbone in helical DNA crystal structures. Biopolymers. 42:1997;113-124.
-
(1997)
Biopolymers
, vol.42
, pp. 113-124
-
-
Schneider, B.1
Neidle, S.2
Berman, H.M.3
-
36
-
-
23444450909
-
Coupling of local folding to site-specific binding of proteins to DNA
-
Spolar R. S., Record M. T. Coupling of local folding to site-specific binding of proteins to DNA. Science. 263:1994;777-784.
-
(1994)
Science
, vol.263
, pp. 777-784
-
-
Spolar, R.S.1
Record, M.T.2
-
37
-
-
0023350241
-
Nucleic acid model building: The multiple backbone solutions associated with a given base morphology
-
Srinivasan A. R., Olson W. K. Nucleic acid model building: the multiple backbone solutions associated with a given base morphology. J. Biomol. Struct. Dynam. 4:1987;895-938.
-
(1987)
J. Biomol. Struct. Dynam.
, vol.4
, pp. 895-938
-
-
Srinivasan, A.R.1
Olson, W.K.2
-
38
-
-
0026569363
-
Conformation of B -DNA containing O6-ethyl-G-C base pairs stabilized by minor groove binding drugs: Molecular structure of d(CGC[e6G]AATTCGCG complexed with Hoechst 33258 or Hoechst 33342
-
Sriram M., van der Marel G. A., Roelen H. L., van Boom J. H., Wang A. H. Conformation of B -DNA containing O6-ethyl-G-C base pairs stabilized by minor groove binding drugs: molecular structure of d(CGC[e6G]AATTCGCG complexed with Hoechst 33258 or Hoechst 33342. EMBO J. 11:1992a;225-232.
-
(1992)
EMBO J.
, vol.11
, pp. 225-232
-
-
Sriram, M.1
Van Der Marel, G.A.2
Roelen, H.L.3
Van Boom, J.H.4
Wang, A.H.5
-
39
-
-
0026475822
-
Structural consequences of a carcinogenic alkylation lesion on DNA: Effect of O6-ethylguanine on the molecular structure of the d(CGC[e6G]AATTCGCG)-netropsin complex
-
Sriram M., van der Marel G. A., Roelen H. L., van Boom J. H., Wang A. H. Structural consequences of a carcinogenic alkylation lesion on DNA: effect of O6-ethylguanine on the molecular structure of the d(CGC[e6G]AATTCGCG)-netropsin complex. Biochemistry. 31:1992b;11823-11834.
-
(1992)
Biochemistry
, vol.31
, pp. 11823-11834
-
-
Sriram, M.1
Van Der Marel, G.A.2
Roelen, H.L.3
Van Boom, J.H.4
Wang, A.H.5
-
40
-
-
0030918413
-
Influence of sequence on the conformation of the B -DNA helix
-
Subirana J. A., Faria T. Influence of sequence on the conformation of the B -DNA helix. Biophys. J. 73:1997;333-338.
-
(1997)
Biophys. J.
, vol.73
, pp. 333-338
-
-
Subirana, J.A.1
Faria, T.2
-
41
-
-
0029866801
-
An in-the-groove view of DNA structures in complexes with proteins
-
Suzuki M., Yagi N. An in-the-groove view of DNA structures in complexes with proteins. J. Mol. Biol. 255:1996;677-687.
-
(1996)
J. Mol. Biol.
, vol.255
, pp. 677-687
-
-
Suzuki, M.1
Yagi, N.2
-
42
-
-
0024296533
-
The molecular structure of the complex of Hoechst 33258 and the DNA dodecamer d(CGCGAATTCGCG)
-
Teng M. K., Usman N., Frederick C. A., Wang A. H. The molecular structure of the complex of Hoechst 33258 and the DNA dodecamer d(CGCGAATTCGCG). Nucl. Acids Res. 16:1988;2671-2690.
-
(1988)
Nucl. Acids Res.
, vol.16
, pp. 2671-2690
-
-
Teng, M.K.1
Usman, N.2
Frederick, C.A.3
Wang, A.H.4
-
46
-
-
0030728865
-
Molecular dynamics of acetylcholinesterase dimer complexed with tacrine
-
Wlodek S. T., Clark T. W., Scott L. R., McCammon J. A. Molecular dynamics of acetylcholinesterase dimer complexed with tacrine. J. Am. Chem. Soc. 119:1997;9313-9322.
-
(1997)
J. Am. Chem. Soc.
, vol.119
, pp. 9313-9322
-
-
Wlodek, S.T.1
Clark, T.W.2
Scott, L.R.3
McCammon, J.A.4
-
48
-
-
0025966606
-
Analysis of local helix geometry in three B -DNA decamers and eight dodecamers
-
Yanagi K., Privé G. G., Dickerson R. E. Analysis of local helix geometry in three B -DNA decamers and eight dodecamers. J. Mol. Biol. 217:1991;201-214.
-
(1991)
J. Mol. Biol.
, vol.217
, pp. 201-214
-
-
Yanagi, K.1
Privé, G.G.2
Dickerson, R.E.3
|